G1696871


Basic Information

Item Value
gene id G1696871
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43496133 ~ 43497100 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1941074
GTGCACtgctattgaccagagccctatggggtagtgcactactattgaccagagccccatggggtAGTGCACtgctattgaccagagccctatgggtcttcTTAtgaggccctggtcaaacgtagtgcactacatagggaataaggtgtcatcTAGTATGCTGCCTGACTGATCTGAAATGATACAGCACAGTTTGTTTTAAGAGCTTTCCGTAGGCTGCTGTCACGTGAAACTTAGGCATTTTGAGTATTATTGGGGGCGAGGTTTTGTAGTCTTGTATATTTATTGTTTTGCCGCAATGATGCTGTCTTTGGGGAATGCCTGTGAATAAACTGATGCTGTCTGGGGGAATGCCTGTGAATAAACTGATGCTGTCTTTGGGGAATGCCTGTCATGAAACTGATGCTGTCTGGGGGAATGCCTGTGAATAAACTGATGCTGTCTTTGGGGAATGCCTGTGAATAAACTGATGCTGTCTTGGGGAATGCCTGTGAATAAACTGATGCTGTCTTTGGGGAATGCCTGTGAATAAACTGATGCTGTCTTTGGGGAATGCCTGTCATTAAACTGATGCTGTCTGGGGGAATGCCTGTGAATAAACTGATGCTGTCTGGGGGAATGCCTGTCATTAAACTGATGCTGTCTGGGGGAATGCCTGTTAATAAACAATCTCAACCTTTTCCCAAGTTAAACAGCACCTTTATAACCTCCGGTATAGTCTATCAGgcctgggcaattccagtcctcgggggTCATGCTCTTCCC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1941074 True 765 lncRNA 0.47 3 43496133 43497100

Neighbor

gene id symbol gene type direction distance location
LOC118942021 micu1 coding upstream 1952 43448714 ~ 43494181 (+)
LOC110510394 NA coding upstream 93369 43371693 ~ 43402764 (+)
LOC110499564 NA coding upstream 347764 43137388 ~ 43148369 (+)
LOC110499502 pde10a coding upstream 374238 42950949 ~ 43125594 (+)
tbxtb LOC106589941 coding upstream 644394 42846046 ~ 42851739 (+)
LOC110499505 LOC106589952 coding downstream 100987 43552789 ~ 43615700 (+)
LOC110499517 LOC106589992 coding downstream 480180 43977280 ~ 43987101 (+)
LOC110499607 NA coding downstream 526919 44024019 ~ 44028357 (+)
LOC110499515 LOC106589989 coding downstream 537388 44034488 ~ 44055611 (+)
capn2 LOC106589959 coding downstream 594300 44091400 ~ 44134903 (+)
G1696870 NA non-coding upstream 3561 43492364 ~ 43492572 (+)
G1696869 NA non-coding upstream 5778 43487901 ~ 43490355 (+)
G1696868 NA non-coding upstream 10707 43485097 ~ 43485426 (+)
G1696867 NA non-coding upstream 11231 43484673 ~ 43484902 (+)
G1696865 NA non-coding upstream 20622 43475164 ~ 43475511 (+)
G1696823 NA non-coding downstream 40057 43537157 ~ 43551194 (+)
G1696876 NA non-coding downstream 56630 43553730 ~ 43554070 (+)
G1696879 NA non-coding downstream 65480 43562580 ~ 43562865 (+)
G1696882 NA non-coding downstream 72552 43569652 ~ 43570811 (+)
G1696563 NA other upstream 286615 43207559 ~ 43209518 (+)
G1696541 NA other upstream 362120 43133627 ~ 43134013 (+)
G1696324 NA other upstream 715584 42779999 ~ 42780549 (+)
LOC118942073 NA other upstream 969125 42522510 ~ 42527008 (+)
G1696904 NA other downstream 126384 43623484 ~ 43626360 (+)
G1696905 NA other downstream 129288 43626388 ~ 43661355 (+)
G1696916 NA other downstream 172464 43669564 ~ 43670353 (+)
G1697152 NA other downstream 370129 43867229 ~ 43908497 (+)
G1697222 NA other downstream 734222 44231322 ~ 44231767 (+)

Expression


Co-expression Network