G1696882


Basic Information

Item Value
gene id G1696882
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43569652 ~ 43570811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1941088
ctcttcctcatcactagAGCTGTCATCACTGCTGCTGGACTCTGCAGCTTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGCGGCTGTAGGTTTGGTGGTCTTCTTGGCTGCAGCGACCTCGTCCTCCGAGCTGTCGCTGTCAGAATCGGAGCTGCTCTCGGCTACGGCCTTGGTTGGGGCTAGTTTGTTCACCACGGGGGTGGCTGGTTTGGAGGCTGGTTTAGAGGCTGGTTTAGAGGCTGGTTTAGTAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGTGGCTGGGTTGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCctcatcttcagatgaagagtCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAGGCTGGTTTAGTAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCctcatcttcagatgaagagtCGGAGTCCGAGCTGCTTTCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCATGTTTCTTGGTAGCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCAGGTTTCTTGGTAGCTGTGGCAGGTTTATTGGTAGCTGCTGCAGGTTTCTTGGTAGCTGTGGCAGGTTTCTTGGTAGCTGTGGCAGGTTTGGCAGGGGCCTCGT
>TU1941089
ctcttcctcatcactagAGCTGTCATCACTGCTGCTGGACTCTGCAGCTTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGCGGCTGTAGGTTTGGTGGTCTTCTTGGCTGCAGCGACCTCGTCCTCCGAGCTGTCGCTGTCAGAATCGGAGCTGCTCTCGGCTACGGCCTTGGTTGGGGCTAGTTTGTTCACCACGGGGGTGGCTGGTTTGGAGGCTGGTTTAGAGGCTGGTTTAGAGGCTGGTTTAGTAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAGGCTGGTTTAGTAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCctcatcttcagatgaagagtCGGAGTCCGAGCTGCTTTCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCATGTTTCTTGGTAGCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCAGGTTTCTTGGTAGCTGTGGCAGGTTTATTGGTAGCTGCTGCAGGTTTCTTGGTAGCTGTGGCAGGTTTCTTGGTAGCTGTGGCAGGTTTGGCAGGGGCCTCGT
>TU1941090
ctcttcctcatcactagAGCTGTCATCACTGCTGCTGGACTCTGCAGCTTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGCGGCTGTAGGTTTGGTGGTCTTCTTGGCTGCAGCGACCTCGTCCTCCGAGCTGTCGCTGTCAGAATCGGAGCTGCTCTCGGCTACGGCCTTGGTTGGGGCTAGTTTGTTCACCACGGGGGTGGCTGGTTTGGAGGCTGGTTTAGAGGCTGGTTTAGAGGCTGGTTTAGTAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGTGGCTGGGTTGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCctcatcttcagatgaagagtCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAGGCTGGTTTAGTAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCctcatcttcagatgaagagtCGGAGTCCGAGCTGCTTTCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCATGTTTCTTGGTAGCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCAGGTTTCTTGGTAGCTGTGGCAGGTTTCTTGGTAGCTGTGGCAGGTTTCTTGGTAGCTGTGGCAGGTTTGGCAGGGGCCTCGT
>TU1941091
ctcttcctcatcactagAGCTGTCATCACTGCTGCTGGACTCTGCAGCTTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGCGGCTGTAGGTTTGGTGGTCTTCTTGGCTGCAGCGACCTCGTCCTCCGAGCTGTCGCTGTCAGAATCGGAGCTGCTCTCGGCTACGGCCTTGGTTGGGGCTAGTTTGTTCACCACGGGGGTGGCTGGTTTGGAGGCTGGTTTAGAGGCTGGTTTAGTAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCctcatcttcagatgaagagtCGGAGTCCGAGCTGCTTTCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCATGTTTCTTGGTAGCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCAGGTTTCTTGGTAGCTGTGGCAGGTTTATTGGTAGCTGCTGCAGGTTTCTTGGTAGCTGTGGCAGGTTTCTTGGTAGCTGTGGCAGGTTTGGCAGGGGCCTCGT
>TU1941092
ctcttcctcatcactagAGCTGTCATCACTGCTGCTGGACTCTGCAGCTTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGCGGCTGTAGGTTTGGTGGTCTTCTTGGCTGCAGCGACCTCGTCCTCCGAGCTGTCGCTGTCAGAATCGGAGCTGCTCTCGGCTACGGCCTTGGTTGGGGCTAGTTTGTTCACCACGGGGGTGGCTGGTTTGGAGGCTGGTTTAGAGGCTGGTTTAGAGGCTGGTTTAGTAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGTGGCTGGGTTGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCctcatcttcagatgaagagtCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAGGCTGGTTTAGTAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCctcatcttcagatgaagagtCGGAGTCCGAGCTGCTTTCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCATGTTTCTTGGTAGCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCAGGTTTCTTGGTAGCTGTGGCAGGTTTATTGGTAGCTGCTGCAGGTTTCTTGGTAGCTGTGGCAGGTTTCTTGGTAGCTGTGGCAGGTTTCTTGGTAGCTGTGGCAGGTTTGGCAGGGGCCTCGT
>TU1941093
ctcttcctcatcactagAGCTGTCATCACTGCTGCTGGACTCTGCAGCTTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGCGGCTGTAGGTTTGGTGGTCTTCTTGGCTGCAGCGACCTCGTCCTCCGAGCTGTCGCTGTCAGAATCGGAGCTGCTCTCGGCTACGGCCTTGGTTGGGGCTAGTTTGTTCACCACGGGGGTGGCTGGTTTGGAGGCTGGTTTAGAGGCTGGTTTAGAGGCTGGTTTAGTAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAGGCTGGTTTAGTAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCctcatcttcagatgaagagtCGGAGTCCGAGCTGCTTTCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCATGTTTCTTGGTAGCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCAGGTTTCTTGGTAGCTGTGGCAGGTTTCTTGGTAGCTGTGGCAGGTTTGGCAGGGGCCTCGT

Function

NR:

description
nucleolar and coiled-body phosphoprotein 1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1941088 False 1139 lncRNA 0.56 2 43569652 43570811
TU1941089 False 848 lncRNA 0.57 3 43569652 43570811
TU1941090 False 1064 lncRNA 0.56 3 43569652 43570811
TU1941091 False 584 lncRNA 0.58 3 43569652 43570811
TU1941092 False 1124 lncRNA 0.56 2 43569652 43570811
TU1941093 True 806 lncRNA 0.57 4 43569652 43570811

Neighbor

gene id symbol gene type direction distance location
LOC118942021 micu1 coding upstream 75471 43448714 ~ 43494181 (+)
LOC110510394 NA coding upstream 166888 43371693 ~ 43402764 (+)
LOC110499564 NA coding upstream 421283 43137388 ~ 43148369 (+)
LOC110499502 pde10a coding upstream 447757 42950949 ~ 43125594 (+)
tbxtb LOC106589941 coding upstream 717913 42846046 ~ 42851739 (+)
LOC110499505 LOC106589952 coding downstream 27276 43552789 ~ 43615700 (+)
LOC110499517 LOC106589992 coding downstream 406469 43977280 ~ 43987101 (+)
LOC110499607 NA coding downstream 453208 44024019 ~ 44028357 (+)
LOC110499515 LOC106589989 coding downstream 463677 44034488 ~ 44055611 (+)
capn2 LOC106589959 coding downstream 520589 44091400 ~ 44134903 (+)
G1696879 NA non-coding upstream 6787 43562580 ~ 43562865 (+)
G1696876 NA non-coding upstream 15582 43553730 ~ 43554070 (+)
G1696823 NA non-coding upstream 18458 43537157 ~ 43551194 (+)
G1696871 NA non-coding upstream 72552 43496133 ~ 43497100 (+)
G1696870 NA non-coding upstream 77080 43492364 ~ 43492572 (+)
G1696892 NA non-coding downstream 13518 43584329 ~ 43584795 (+)
G1696899 NA non-coding downstream 41057 43611868 ~ 43612229 (+)
G1696903 NA non-coding downstream 50389 43621200 ~ 43621692 (+)
G1696909 NA non-coding downstream 62498 43633309 ~ 43633743 (+)
G1696913 NA non-coding downstream 94633 43665444 ~ 43665678 (+)
G1696563 NA other upstream 360134 43207559 ~ 43209518 (+)
G1696541 NA other upstream 435639 43133627 ~ 43134013 (+)
G1696324 NA other upstream 789103 42779999 ~ 42780549 (+)
LOC118942073 NA other upstream 1042644 42522510 ~ 42527008 (+)
G1696904 NA other downstream 52673 43623484 ~ 43626360 (+)
G1696905 NA other downstream 55577 43626388 ~ 43661355 (+)
G1696916 NA other downstream 98753 43669564 ~ 43670353 (+)
G1697152 NA other downstream 296418 43867229 ~ 43908497 (+)
G1697222 NA other downstream 660511 44231322 ~ 44231767 (+)

Expression


Co-expression Network