XLOC_003616 (si:ch211-11c3.11)


Basic Information

Item Value
gene id XLOC_003616
gene name si:ch211-11c3.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36675599 ~ 36683726 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007043
ACAGCTGTACACATGGTGTCGTGATATACTTTCATCTTCACAGAACTGATCGTGCTGAATGGTTTCCTCTAATGTGTTACTTCCTAATTCACCCATTGTGTGTTTCATTGTGTTTGTTTCACACTCGCTGGGATGAAGTTGTTCGTCTTCATTGTTTTTCAGCTCCTTATTGAGGTTCAGTCCAACAATGCTCCTACTGTACATGCATCTCCAGCTGTCTTTACTGAATCCAGATCAGTGAATATCAGCTGTGAGACGCCAGCAGATATTACAGTAAAGCATTGTAATTTTACAATAAATGGAAAAAGGCTCAAAACTAAAGTCAGTCCATCATGTGAGCTCAACCTCACTGGTGTTGAAGTGCTCAGACAGGCAGGTGGAAAATCTCCTCAATCAGTCAACATTAGCTGCCGCTACACAATAAAAGACGGACACAAGAATAAATCTTCAAATTCAGTTCCTGTCACAGTCACAGTTCTAGacaAACTTCAGAAACCCGTCATTAGTGTTAGTGAAGATGAGAATCAGCTCAGCATAATCTGTGAAATACCACTGTTAGTCAGAGCTGTCTTCAACTGTAGCCTTTACTATGGAGATGATGCTATTCTGGTCAACCGTGACTCCGAGAGTTCACCTGGAGAGAAACATCTTTGTAAGTTTAATCCAACTCTTAGTGATCTCTTGAAAAGACCAGTGCAGAACAAACAGTTAAGCTGTGATTATTCACTGAAGACTGAACCTGACATCAGATCTCCACACAGTGACACACACATCATTGGAGCAGCATCAATGTCAATGTCCACTTCTGAAACCACACAGCTTAACAGTACAGCTGcaGACCCCCATTCAAAGACAAATCAGCAGTCAACCagcagcaccaaacaaacaacaggcAAAGATTCCACCACAAACCTGCCAACCAGTACATCAATGCAAACCACAGCTGAGCCAACAGTTCACACTTCAACAGATCAACCAACCACAGCAAAATACACAGAAAACACAGCAAAGGACACCACAGATCCATGGGTTAAAGTGCTGGCTTTCTCTTGTGCTGGTGTCATTTTGTCTGTATTTATTTGTCTGAGCTGGTTTGCAAGTAAGTCATATTTACACACAAATTCTAGGTATGTTCAGT

Function

symbol description
si:ch211-11c3.11 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099636

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007043 True 1138 mRNA 0.42 9 36675599 36683726

Neighbor

gene id symbol gene type direction distance location
XLOC_003615 si:ch211-11c3.9 coding upstream 1223 36665359 ~ 36674376 (+)
XLOC_003614 CR457444.3 coding upstream 16960 36657025 ~ 36658639 (+)
XLOC_003613 CR457444.4 coding upstream 18834 36653213 ~ 36656765 (+)
XLOC_003611 CR457444.6 coding upstream 34744 36600242 ~ 36640855 (+)
XLOC_003612 CR457444.10 coding upstream 62435 36612354 ~ 36613164 (+)
XLOC_003617 si:ch211-11c3.12 coding downstream 133 36683859 ~ 36687267 (+)
XLOC_003618 parapinopsinb coding downstream 93887 36777613 ~ 36788797 (+)
XLOC_003619 tkta coding downstream 305970 36989696 ~ 37035835 (+)
XLOC_003620 BX248521.3 coding downstream 310968 36994694 ~ 36994808 (+)
XLOC_003621 bicd2 coding downstream 365379 37049105 ~ 37088934 (+)
XLOC_003369 CR854846.2 misc upstream 20552517 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 23963603 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 23981336 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 23990000 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 23995571 12679732 ~ 12680028 (+)
XLOC_003610 CR457444.12 non-coding upstream 85111 36587329 ~ 36590488 (+)
XLOC_003623 NA non-coding downstream 453074 37136800 ~ 37170438 (+)
XLOC_003626 CABZ01065569.1 non-coding downstream 530382 37214108 ~ 37214223 (+)
XLOC_003628 CR936337.1 non-coding downstream 680720 37364446 ~ 37364560 (+)
XLOC_003634 NA non-coding downstream 1157531 37841257 ~ 37848711 (+)

Expression


Co-expression Network