XLOC_036167 (ciao1)


Basic Information

Item Value
gene id XLOC_036167
gene name ciao1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 4779744 ~ 4789034 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070741
CTATCAACCGCAAGACACTGAAGCACAAAACAGGAAGCGGGAAGCAGCTGATAAACAGAAGACTTGAAGTTGTGTGACATCCGAGAGAGAACAGTGCTGCCGACAGGGAAACATTTACATGTCACatagtaataattaataacacaCAGTTATATGAAATGAAGGGCGCGCTGGAGCTACAGCACAGGGTGAGCGCGCACCCGGACTCGCGCTGTTGGTACGTCGCGTGGAATCCCGCGGGCACGACGCTCGCGACCTGCGGCGGAGACCGTGCGATAAGAATATGGGGCAAAGAAGGGGACAGTTGGGAATGTAAGTGTGTCCTTTCTGATGGACACCAGCGCACAGTCAGAAAAGTAGCCTGGTCTCCCTGTGGGAAATACCTGGCTTCAGCCAGCTTTGATGCCACGACATGCATCTGGAAGAAGACGGATGAGGATTTTGAGTGCCTGACGGTGTTAGAAGGTCATGAGAATGAGGTGAAATGTGTAGCTTGGGCTCCATCTGGAAGCTTACTGGCCACCTGCAGCAGAGACAAAAGCGTTTGGATTTGGGAAGTGGATGAGGAGGACGAATACGAGTGTTTAAGTGTTGTGAATTCACACACGCAGGACGTAAAACATGTCGTCTGGCACCCGACGCAGGAGCTTCTCGCATCAGCCAGTTACGACAACAAGATCTGTATTTATAAAGAGGAAGATGATGACTGGGAATGCAGAGCCACGCTAGAAGGACATGAATCCACTGTCTGGAGTTTGACCTTTGACCCTGAGGGACGGAGATTGGCTTCTTGTAGCGACGATCGAACCGTAAAGATCTGGAAAGAGTCGACAACTGGAGATGGTTCTTCGGATGAGTCCTGGAAGTGTATATGCACCTTGTCTGGATTCCATGGGAGAACAATATATGATATTGCATGGTGTCGTCTGACCGGTGCTTTAGCCACCGCATGTGGTGATGATGGAGTGCGTGTGTTCAGTGAAGACCCCACTGCTGACCCAGAGCAGCCCATCTTCGCCCTGTCAGCCCACGTGCCCAAAGCCCACAATCAGGACGTCAACTGCGTGTCCTGGAACCCGAAAGAAGCAGGACTTCTGGCCACATGCAGCGACAATGGAGAGTTCGCCATCTGGAAATACAACTCTGCCTGAGCCGGTGAATGACGCTCAAGTAGACCGAAAGCACTGAATCagtggtagttcacccaaaaatgtgaggtctgtaatttactcaccctttacttggtCTTTATTCTCtttcgtctgttgaacacaaaagcagatattttgatgaaagcttaCAAAAACTGTAGCCCTTGACaaccataataggaaaaacatatactatggaagtcaatggttacaggttttcagcattcttcaaaatatcttcttttgtgtttaacggaagaaagaatctcaaacaggtttggaataagtaaatgatggcagaatgctaatttttgggtgaacttcccCTGTAAACTGGTCATAATGTGGAACAATAGCTGTTTTATTCTCACTTTGAGTACTGCAATTGTGCGTTGATGACAGCACTGGTCAAAAAGACaatacactttttattaaaaTCGAATTTATCTGTTAGACTTTTTGATGGGTCACAATTTCTTAACCATATTGATATACTTCAGTTTTGTCTGTAGCTTAAAATGCCTTCAGGGCTTTACTTAAATAAAGCCTGCTAAAGATCAAAAGCAGCTCCTTTTTCAAGTGAATTATCATTTTTAATGctgtatattttgctgacttatgtacttacattgtcccaaatgttttaaagaatgttcaaatccagaaAAATTATCAATTTTAACTAGtaa

Function

symbol description
ciao1 Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to be part of CIA complex. Orthologous to human CIAO1 (cytosolic iron-sulfur assembly component 1).

GO:

id name namespace
GO:0097428 protein maturation by iron-sulfur cluster transfer biological_process
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0097361 CIA complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040426-839 Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to be part of CIA complex. Orthologous to human CIAO1 (cytosolic iron-sulfur assembly component 1).

Ensembl:

ensembl_id ENSDARG00000059212

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070741 True 1840 mRNA 0.45 7 4779744 4789034

Neighbor

gene id symbol gene type direction distance location
XLOC_036166 cdc45 coding downstream 19021 4734005 ~ 4760723 (-)
XLOC_036165 NA coding downstream 76630 4699175 ~ 4703114 (-)
XLOC_036164 zgc:63587 coding downstream 85286 4621243 ~ 4694458 (-)
XLOC_036163 sept5a coding downstream 161091 4588398 ~ 4618653 (-)
XLOC_036162 gp1bb coding downstream 193048 4576132 ~ 4586696 (-)
XLOC_036168 igsf9b coding upstream 67406 4856440 ~ 4892913 (-)
XLOC_036169 FP015956.1 coding upstream 86164 4875198 ~ 4875317 (-)
XLOC_036170 tmem230b coding upstream 174356 4963390 ~ 4972916 (-)
XLOC_036171 CABZ01078155.1 coding upstream 278694 5067728 ~ 5067849 (-)
XLOC_036172 NA coding upstream 330128 5119162 ~ 5185900 (-)
XLOC_036159 NA non-coding downstream 338751 4435691 ~ 4440993 (-)
XLOC_036154 NA non-coding downstream 738480 3965753 ~ 4041264 (-)
XLOC_036155 NA non-coding downstream 739405 4036937 ~ 4040339 (-)
XLOC_036152 NA non-coding downstream 851953 3896186 ~ 3927791 (-)
XLOC_036173 NA non-coding upstream 404924 5193958 ~ 5196559 (-)
XLOC_036176 NA non-coding upstream 613822 5402856 ~ 5411220 (-)

Expression

Expression of XLOC_036167(ciao1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
End of interactive chart.

Expression of XLOC_036167(ciao1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_10051106_10054840 NA coding CI01000010 null 10050850 ~ 10054840 (-)