G1698091


Basic Information

Item Value
gene id G1698091
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 45084909 ~ 45086754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1942866
AGTCAGGGGTTAGAGAGGGCCTTCCAGGATTTGTCAGTGGTTAGAGATGGGTTAGAGAGGGCCTTCCAGGGCTAGTCAGGGGTTAGAGAGGGTCTTCCAGGATTAGTCAGGGGTTAGAGATGGGTAAGAAAGGACCTTCCATGATTAGTCAGGGGTTAGAGAGGTCCTTCCAAGATTAGTCAGGGGTTAGAGATGGGTTAGAGAGGGCCTTCCAGGGTTAGAGAGGGGTTAGAAAGGGCCTTCCAGGGTTAGAGACAGGTTAGAAAGGGCCTTCCAGGATTAGTCAGGGATTAGAGAGGACCTTCCAGGGTTAGTCAGGGGTTAGAGAGGGCCTTCCAGGATTAGTCAGGGGTTAGAGAGGGCC
>TU1942868
AGTCAGGGGTTAGAGAGGGCCTTCCAGGATTTGTCAGTGGTTAGAGATGGGTTAGAGAGGGCCTTCCAGGGCTAGTCAGGGGTTAGAGAGGGTCTTCCAGGATTAGTCAGGGGTTAGAGATGGGTTAGAAAGGGCCTTCCAGGATTAGTCAGGGATTAGAGAGGACCTTCCAGGGTTAGTCAGGGGTTAGAGAGGGCCTTCCAGGATTAGTCAGGGGTTAGAGAGGGCC
>TU1942869
AGTCAGGGGTTAGAGAGGGCCTTCCAGGATTTGTCAGTGGTTAGAGATGGGTTAGAGAGGGCCTTCCAGGGCTAGTCAGGGGTTAGAGAGGGTCTTCCAGGATTAGTCAGGGGTTAGAGAGGGCCTTCCAGGGTTAGAGAGGGGTTAGAAAGGGCCTTCCAGGGTTAGAGACAGGTTAGAAAGGGCCTTCCAGGATTAGTCAGGGATTAGAGAGGACCTTCCAGGGTTAGTCAGGGGTTAGAGAGGGCCTTCCAGGATTAGTCAGGGGTTAGAGAGGGCC
>TU1942865
AGGGCCTTCCAGGGTTAGTCAGGGGTTAGAGAGGGTCTTCCAGGATTAGTCAGGGGTTAGAGATGGGTTAGAAAGGGCCTTCCAGGGTTAGAGAGGGGTTAGAAAGGGCCTTCCAGGGTTAGAGACAGGTTAGAAAGGGCCTTCCAGGGTTAGAGACAGGTTAGAAAGGGCCTTCCAGGATTAGTCAGGGATTAGAGAGGACCTTCCAGGGTTAGTCAGGGGTTAGAGAGGGCCTTCCAGGATTAGTCAGGGGTTAGAGAGGGCC
>TU1942867
GGGTTAGAGAGGGTCTTCCAGGATTAGTCAGGGGTTAGAGATGGGTTAGAAAGGGCCTTCCAGGGTTAGAGAGGGGTTAGAAAGGGCCTTCCAGGGTTAGAGACAGGTTAGAAAGGTCCTTCCAGGATTAGTCAGGGGTTAGAGAGGGCCTTCCAGGGTTAGTCAGGGGTTAGAGATGGGTTAGAGAGGGCATTCCAGGGTTAGAGAGGGGTTAGAAAGGGCCTTCCAGGGTTAGAGACAGGTTAGAAAGGGCCTTCCAGGATTAGTCAGGGATTAGAGAGGACCTTCCAGGGTTAGTCAGGGGTTAGAGAGGGCCTTCCAGGATTAGTCAGGGGTTAGAGAGGGCC
>TU1942870
GGGTTAGAGAGGGTCTTCCAGGATTAGTCAGGGGTTAGAGATGGgttaGAAAGGGCCTTCCAGGATTAGTCAGGGGTTTAGAGAGGGCCTTCCAGGGTTAGTCAGGGTTTAGAGAGGGCCTTCCAGGGTTTGTCAGAGGTTAGAGAGGGCCTTCCAGGGTTAGTCAGGGGTTAGAGAGGGTCTTCCAGGATTAGTCAGGGGTTAGAGATGGGTTAGAAAGGGCCTTCCAGGATTAGTCAGGGGTTAGAGAGGGCCTTCCAGGATTAGTCAGGGGTTAGAGATGGGTTAGAGAGGGCCTTCCAGGGTTAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1942866 False 364 lncRNA 0.52 2 45084909 45086427
TU1942868 False 229 lncRNA 0.54 2 45084909 45086427
TU1942869 False 280 lncRNA 0.54 3 45084909 45086427
TU1942865 False 265 lncRNA 0.54 3 45085434 45086427
TU1942867 False 347 lncRNA 0.53 2 45085737 45086427
TU1942870 True 311 lncRNA 0.53 2 45085737 45086754

Neighbor

gene id symbol gene type direction distance location
LOC110499568 LOC106589976 coding upstream 162212 44885773 ~ 44922697 (+)
LOC110499508 LOC106589972 coding upstream 547191 44402023 ~ 44537718 (+)
LOC110499511 LOC106578785 coding upstream 722935 44337645 ~ 44361974 (+)
LOC110499510 LOC106589963 coding upstream 757660 44298168 ~ 44327249 (+)
LOC110499566 LOC105028001 coding upstream 821492 44181988 ~ 44263417 (+)
LOC110515455 jag1 coding downstream 238147 45324901 ~ 45444013 (+)
LOC118942022 NA coding downstream 592171 45678925 ~ 45679902 (+)
LOC118942078 NA coding downstream 936140 46022894 ~ 46025800 (+)
tsnax tsnax coding downstream 1070880 46157634 ~ 46174248 (+)
disc1 LOC106595121 coding downstream 1091847 46178601 ~ 46308949 (+)
G1698082 NA non-coding upstream 4752 45079790 ~ 45080157 (+)
G1698071 NA non-coding upstream 8915 45074176 ~ 45075994 (+)
G1698060 NA non-coding upstream 23555 45061093 ~ 45061354 (+)
G1698024 NA non-coding upstream 59691 45024874 ~ 45025218 (+)
G1698021 NA non-coding upstream 64199 45020459 ~ 45020710 (+)
G1698092 NA non-coding downstream 570 45087324 ~ 45087911 (+)
G1698099 NA non-coding downstream 9503 45096257 ~ 45096822 (+)
G1698124 NA non-coding downstream 29192 45115946 ~ 45116560 (+)
G1698133 NA non-coding downstream 37174 45123928 ~ 45124255 (+)
G1698148 NA non-coding downstream 46544 45133298 ~ 45133498 (+)
G1697374 NA other upstream 585063 44498660 ~ 44499846 (+)
G1697222 NA other upstream 853142 44231322 ~ 44231767 (+)
G1697152 NA other upstream 1180051 43867229 ~ 43908497 (+)
G1696916 NA other upstream 1414556 43669564 ~ 43670353 (+)
G1698119 yo84 other downstream 24812 45111566 ~ 45112361 (+)
G1698413 i2b2b other downstream 609442 45696196 ~ 45697330 (+)
G1698414 NA other downstream 613336 45700090 ~ 45701101 (+)
G1698884 NA other downstream 1102191 46188945 ~ 46190421 (+)
LOC110499521 msmb other downstream 1460018 46546637 ~ 46552961 (+)

Expression


Co-expression Network