XLOC_003617 (si:ch211-11c3.12)


Basic Information

Item Value
gene id XLOC_003617
gene name si:ch211-11c3.12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36683859 ~ 36687267 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007044
atttttttcaataactttcttgtaaataaatgtttaaatgtgaaaCTGTCTAATTTCAAACtgatatatgcatgcatgtaaatATTCCATAATgatacacttttattttaagctataaaaataaatctgtgaaaACTGATGTGTCCAGTCAAGGAAATGGTACGAGTTGTTCTGGATCACCAGAGATCTATTCTCTTATCACTTCTGTACCAGCCACATCTCAACCCACATCTGAGGATCTGGAGCACCCAGAGTCACATCAGCACAACACAGCAAACCCTACAGACACTTTCATTACTTCTGAAAACCCAATCTATCAGCCCTCAGATGTGTCAGTTAATACACAACATCAGGGAAATACAGAGCAAACTGAGAGTGTTTACCACCTGTACAGCACGATCCCCGATAAACCTGTTCAGCCCTACACTGGAGATCAAGAATACAGTTTGATCCAGATGCACTGAGTCTCAGATTAAAGGGCCAGGGAGGGTAAAATGTCCTTTTCTGAAGTAAAACCAGAGTAAAACAGAACATTGTGAACCAAATACTACTTACTGTTATGGTATGATGTTGCTCAACCTTACACTTTAGCAGAAAATAAAAAGCTTGGTATGCTTGGTGGAAAAttgtaaatgatttaaaatgttatttatttctaaaattattGGTAAAATTTGACTTTAGGTTTACTTACAATATTAAAGCTTTCacataaaaagttaaatattcaCAAAAATTACGACTTTAACTCTCACTATGCGCACAATATTTTAACAAGGATACAGCCACtgttaactacaaaaaaataaaaataaatattgctagtAGTTTGTAAACACTCAAAACATCAAAAAAGAAATGCACAGTATCCGAAACTACTTGTACACAAGTTAacatacaagttttttttttatgtcctaTAGTTACGACagtataaaatatgaaattaacaTGCAGGGTGAAATGACTAAATAGACAGATATTTATGCACTTTGTAATAGAGTATACATTAGTAGGCTACAATAGATTAAATTTTGGATAACACAACAGCATAAGTGTTTTGAAAGCATGTGTATTAGTTTCCAGTTTGTGCTAATAAGTGTCATAAAACAAGGCGGAAAACGACTCGCTATGACGTAGATTCCCATAATAAACCTCCATTTGCAGTCCAAGCAAAGCACTTAGAAATGATTTACTCACTGTTTTGATGTAGCAGCTGTACCAGATCAAATAATGTTGGCTTCTTCCTTCAAAATAAGTTTCTTCTCGAACTTTCCATTAACGTTACACCGTGGCTTCTTTGCAAAACAATCTTAAGTCAAAGCGTGAACAAACATAAACATCCTCGGAAGCGATAATCGATCCAGTTGTGTGTGAAGGGTGACCTTCTGCATGTTAGAGAAAGCGAGctgttaaacaaaaacaacattataaaattaaaatgttgtttCAGGTCATAAATTTGTTGGACATAGTTTAAAGTATCCAGTGTAGACAGTGAGTTTTAAATTATCAGTTCCTAGGACATGCTTTCCGTGCGTCCAGCTGGGTTAATTGAGTGGGCGGGGCTTACGGCGCAACGACGTTAGCTTATGCAAATAAATGTTTCTGcgattttttaaaattagttttagcTTACATAAACTCTGTTCATAATGGTGTCAAGCCAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102955

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007044 True 1671 mRNA 0.35 5 36683859 36687267

Neighbor

gene id symbol gene type direction distance location
XLOC_003616 si:ch211-11c3.11 coding upstream 133 36675599 ~ 36683726 (+)
XLOC_003615 si:ch211-11c3.9 coding upstream 9483 36665359 ~ 36674376 (+)
XLOC_003614 CR457444.3 coding upstream 25220 36657025 ~ 36658639 (+)
XLOC_003613 CR457444.4 coding upstream 27094 36653213 ~ 36656765 (+)
XLOC_003611 CR457444.6 coding upstream 43004 36600242 ~ 36640855 (+)
XLOC_003618 parapinopsinb coding downstream 90346 36777613 ~ 36788797 (+)
XLOC_003619 tkta coding downstream 302429 36989696 ~ 37035835 (+)
XLOC_003620 BX248521.3 coding downstream 307427 36994694 ~ 36994808 (+)
XLOC_003621 bicd2 coding downstream 361838 37049105 ~ 37088934 (+)
XLOC_003622 card19 coding downstream 407898 37095165 ~ 37101987 (+)
XLOC_003369 CR854846.2 misc upstream 20560777 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 23971863 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 23989596 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 23998260 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 24003831 12679732 ~ 12680028 (+)
XLOC_003612 CR457444.10 non-coding upstream 70695 36612354 ~ 36613164 (+)
XLOC_003610 CR457444.12 non-coding upstream 93371 36587329 ~ 36590488 (+)
XLOC_003623 NA non-coding downstream 449533 37136800 ~ 37170438 (+)
XLOC_003626 CABZ01065569.1 non-coding downstream 526841 37214108 ~ 37214223 (+)
XLOC_003628 CR936337.1 non-coding downstream 677179 37364446 ~ 37364560 (+)
XLOC_003634 NA non-coding downstream 1153990 37841257 ~ 37848711 (+)

Expression


Co-expression Network