G1698453



Basic Information


Item Value
gene id G1698453
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 45864498 ~ 45871292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1943338
aaataaccctgtagccaccaagccactactactaaataaccctgtaGCCACCAAGCcactactactaaataacccccctagtctccaagccactactactaaataaccccaatagcctccaagccactactactaaataaccctgtagccaccaagccactactactaaataacccccctagtctccaagccactactactaaataacccccctagtctccaagccactactactaaataaccctgtaGCCTCCTGAATTGCTTACAGAAAATTTCAGAGATCATAATGGCGACAGTATTGAGCATTAAATAAATACTACTATCCCACAAACACTTCCTCATGAAAACTATATATAATCTAGCCTTGTTCTGGTCCTCTGTGGACTTCCA
>TU1943337
aaataaccctgtagccaccaagccactactactaaataaccctgtaGCCACCAAGCcactactactaaataacccccctagtctccaagccactactactaaataaccccaatagcctccaagccactactactaaataaccctgtagccaccaagccactactactaaataacccccctagtctccaagccactactactaaataacccccctagtctccaagccactactactaaataaccctgtaGCCTCCTGAATTGCTTACAGAAAATTTCAGAGATCATAATGGCGACAGTATTGAGCATTAAATAAATACTACTATCCCACAAACACTTCCTCATGAAAACTATATATAATCTAGCCTTGTTCTGGTCCTCTGTGGACTTCCA
>TU1943336
aaccctgtTATCTCcgagccactactactaaataaccctgtagcctcaaagccactactactaaataacccctagtctccaagccactactactaaataaccccaatagcctccaagccactactactaaataaccctgtagccaccaagccactactactaaataacccccctagtctccaagccactactactaaataacccccctagtctccaagccactactactaaataaccctgtaGCCTCCTGAATTGCTTACAGAAAATTTCAGAGATCATAATGGCGACAGTATTGAGCATTAAATAAATACTACTATCCCACAAACACTTCCTCATGAAAACTATATATAATCTAGCCTTGTTCTGGTCCTCTGTGGACTTCCA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1943338 False 390 lncRNA 0.42 2 45864498 45871292
TU1943337 False 390 lncRNA 0.42 2 45866072 45871292
TU1943336 True 384 lncRNA 0.42 2 45868727 45871292

Neighbor


gene id symbol gene type direction distance location
LOC118942022 NA coding upstream 184596 45678925 ~ 45679902 (+)
LOC110515455 jag1 coding upstream 420485 45324901 ~ 45444013 (+)
LOC110499568 LOC106589976 coding upstream 941801 44885773 ~ 44922697 (+)
LOC110499508 LOC106589972 coding upstream 1326780 44402023 ~ 44537718 (+)
LOC110499511 LOC106578785 coding upstream 1502524 44337645 ~ 44361974 (+)
LOC118942078 NA coding downstream 151602 46022894 ~ 46025800 (+)
tsnax tsnax coding downstream 286342 46157634 ~ 46174248 (+)
disc1 LOC106595121 coding downstream 307309 46178601 ~ 46308949 (+)
LOC110499530 LOC106590013 coding downstream 541220 46412512 ~ 46501346 (+)
LOC110499521 msmb coding downstream 675345 46546637 ~ 46552961 (+)
G1698431 NA non-coding upstream 49125 45812775 ~ 45815373 (+)
G1698429 NA non-coding upstream 53582 45810589 ~ 45810916 (+)
G1698425 NA non-coding upstream 59537 45804677 ~ 45804961 (+)
G1698424 NA non-coding upstream 61228 45802958 ~ 45803270 (+)
G1698421 NA non-coding upstream 69835 45794426 ~ 45794663 (+)
G1698465 NA non-coding downstream 15507 45886799 ~ 45887541 (+)
G1698472 NA non-coding downstream 25455 45896747 ~ 45897331 (+)
G1698480 NA non-coding downstream 35633 45906925 ~ 45909775 (+)
G1698496 NA non-coding downstream 64304 45935596 ~ 45938302 (+)
G1698796 NA non-coding downstream 146520 46017812 ~ 46018053 (+)
G1698414 NA other upstream 163397 45700090 ~ 45701101 (+)
G1698413 i2b2b other upstream 167168 45696196 ~ 45697330 (+)
G1698119 yo84 other upstream 752137 45111566 ~ 45112361 (+)
G1697374 NA other upstream 1364652 44498660 ~ 44499846 (+)
G1698884 NA other downstream 317653 46188945 ~ 46190421 (+)
LOC118942483 NA other downstream 710578 46580927 ~ 46588053 (+)

Expression



Co-expression Network