G1698824


Basic Information

Item Value
gene id G1698824
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 46056856 ~ 46058450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1943781
TTCCTTACATAGtgtactatttttgaccagggcccatcgaCCAGGGCCTATTGGTCTCTGGTCGAAAGTAAAGCACTATGTAGGGATAAGAGTGCCATTAGGGACACAGACCATGTTTAATGTTCAGATTAGGCACCACCCTGGAACTGAGATCTGTGGGATTAGAGACCCTGAGAAACGCCTCAGGTCACTAAAACAGAAAACACTCAGCATAGTTCTATAAAAAACAAAGTCTGAGTTGAATCTAATATCTGGTTTCAGTGATAGGAACGGTGTAACCTGAGTACCAGTCTCTGCCATCATGCCACTGACAGTGTGTGGCATAGAGTGACGTGATGACACAAACAGATTTATGCAGGCTAGGAAATGTGTATGATACCTACTATAAACCCCTACTACTGTAAAATACAGATAACTACATTTAACTACAATAGGGTTGCAAAATACTGCTTACTGTCCCCAAAGTCCCAGATTGTCCAGAAATCTTGGGTGGTTGAATCTGGATTTCCTGACAACTTTTTTCTTGATTCCATGAATTATCCAACTGGGACTTTGGGGAAAGTTTACATAACGTGATGTTGAAGCAGATGCAACATCAACCAGGATCATATAACATGTAAACAGACCCTTAATACTGAGAGAGAAGTAGCAATAATCACACATTACAgggtcaattccatttcaattccagtcaactAAGGAAGTACactgacattttaattccagttcTCTTCATTGCTTTTCAATTAGCAAaatgtggaattggaatttggtttactttgtgaattgactggaattgatcccaaccctgccTCCCACAGACGTTGATACTGATGATTAACACACTAAATGACTGTACACTCTGGCAGAagcacaaatggcaccctgttccctaaatagtgcactaattttgaccagagccttatgggaaCGATATCACAGGGATGTTATAGCCTGAAATAGAATAAACACTGTTCCTACAGAAACTGTCTCAGTGGCTGATCAAAGGCAGTGCACTATATTggcaatagggttccatttgggacacaaactaaAATACATCCACCCTGTAGGAGACGGAGGAGgctgtagggttgcaaaattcccttAACTTTCctcaaattcccaggttttccagaaatcccggttAGAAGATTCCCCAAAtcagcaggaaatccagaatcctccCACCAGGATTTATGGAGGAACTAAGAGGTGAGGTCATTTTACAATCCTAGACTCGAATGGAGCAAAGCAGAGTGACAAGCAGGCCTCTGGGTGGGTTAGTTGGCTGTATGGTATAAGGCCTTTCACAACAATGTATTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1943781 True 1328 lncRNA 0.42 2 46056856 46058450

Neighbor

gene id symbol gene type direction distance location
LOC118942078 NA coding upstream 31056 46022894 ~ 46025800 (+)
LOC118942022 NA coding upstream 376954 45678925 ~ 45679902 (+)
LOC110515455 jag1 coding upstream 612843 45324901 ~ 45444013 (+)
LOC110499568 LOC106589976 coding upstream 1134159 44885773 ~ 44922697 (+)
LOC110499508 LOC106589972 coding upstream 1519138 44402023 ~ 44537718 (+)
tsnax tsnax coding downstream 99184 46157634 ~ 46174248 (+)
disc1 LOC106595121 coding downstream 120151 46178601 ~ 46308949 (+)
LOC110499530 LOC106590013 coding downstream 354062 46412512 ~ 46501346 (+)
LOC110499521 msmb coding downstream 488187 46546637 ~ 46552961 (+)
mrpl2 rl2 coding downstream 504594 46563044 ~ 46577877 (+)
G1698822 NA non-coding upstream 2352 46054305 ~ 46054504 (+)
G1698811 NA non-coding upstream 10220 46046048 ~ 46046636 (+)
G1698808 NA non-coding upstream 10877 46036070 ~ 46045979 (+)
G1698807 NA non-coding upstream 19356 46029300 ~ 46037500 (+)
G1698805 NA non-coding upstream 28068 46024136 ~ 46028788 (+)
G1698830 NA non-coding downstream 6004 46064454 ~ 46064686 (+)
G1698836 NA non-coding downstream 11235 46069685 ~ 46069932 (+)
G1698841 NA non-coding downstream 24127 46082577 ~ 46087830 (+)
G1698845 NA non-coding downstream 35791 46094241 ~ 46094447 (+)
G1698856 NA non-coding downstream 40070 46098520 ~ 46546508 (+)
G1698414 NA other upstream 355755 45700090 ~ 45701101 (+)
G1698413 i2b2b other upstream 359526 45696196 ~ 45697330 (+)
G1698119 yo84 other upstream 944495 45111566 ~ 45112361 (+)
G1697374 NA other upstream 1557010 44498660 ~ 44499846 (+)
G1698884 NA other downstream 130495 46188945 ~ 46190421 (+)
LOC118942483 NA other downstream 523420 46580927 ~ 46588053 (+)

Expression


Co-expression Network