G1699000 (LOC106590727)


Basic Information

Item Value
gene id G1699000
gene name LOC106590727
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 46524622 ~ 46526558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1944000
ATTTCCTTTGTAATTCTTCTTAATTAAAAAGACTCCACTGAATTCTAATTATAAAATTAAATCAACTCAATAACCGGTAAATTACTACATAAGCATTGAACGGCCCCTGTACTGAAACCCACAGGAGAGCAATAAACCACAGCAGATCAGGGGTCTTGTATATACATAATACTAGATCAAATAATGACATAGAAAACCAATTTAATTTAATGCCAAAGCATTTTGTTTCAAATGTAAATCATTTTAATTCTCTGTGTGGTATTCCTGAATGACTACATTGCGGaccatgccagatcttacaagcCTGGATAGGTTTAACATATCAGCATTCCATATCGTATGATAAAGTAAGCTGATGCTCACAGCCATTAGTTAATGGAATGTTTGCAATGCAGCCAGCTTGGAACGTGCCCATCAGCTCCCAACTCTGTAGTGCCAATGACTCCAATATTCAACTGATTAAAACTGAATTGTCCACTACAGCACAGGAACAACCATCTGTTGTTATATTCTAATAATGCAAGTATTTATCTTAACCTGTATTTTACTTCTTGTTTTTTGTTTAattataaaacattcattattCATTAAATCTGCAGGGAAATGAAGCCTTTAACAGAGTTCAGAGATCCTGTTCTTTACACCAGAATGTGTTGTCTTTAACAGAGTCTAGAGATCCTGTTCTTTACACCAGAATGTGTTGTCTTTAACAGAGTCTAGAGATCCTGTTCTTTACACCAGAATGTGTTGTCTTTAACAGAGTCTAGAGATCCTGTTCTTTACACCAGAATGTGTTGTCTTTAACAGAGTCTAGAGATACTGTTATTTGAATCCACAGAGGAAAGTCTTTAATTTGCAGAGTCTGGAGATACTGTTCTCTGAATCCACAGGGCAAATATTAAGAGTCTAGAGATACTGTTATTTACACTAGAAGGTGTTGTCCATGTCACCATATTATCCTTAAGGAGAGTTTCCACTGTGTTCCAATGATAATATACATTCAGATTGGTATTATAATCTTCTTTGTATCAAGGTTCTTCATAAACATTCTCCATGTCTCTGCTCTATACTCCATAAGGATCCTGCGTCCCTTTGATCAGTGACAATATCCATACACTGCTTTATGTTCTATTAGAAGTGTAAAGTGTCCTTCTGATCAGTGATAATATCCAGGGTATCCAAGGTTTTTCACATGATTTTGACCATTGCCCTGTAGAGTCCTGATGGTCATACATGATATTGGTACATCCATGTAGATTTTGGTCAGAGTCAGATGTTCCTGTGTGTCCCGTGTATAATATCCTGAGGGGCATACATACATGGTATGATCCTGGTCTCAGTCATGTATGTTGACATGTAGTTGTGACCTCTGGCAGAGGGAGGGGCAGGGCTGTCTGGTCCGGGAGGACCACCTGCGGGTGAGCGGTCATCACTATAGAAACAGGGCGTCCAAGACCCTGGTTACCATGGTGATGTggtacagagttcctctgtcgtTCCAACCCGAAAGCAGGAGGAGTGTTCGGTATCTGCTTCCTGTACTGGACGAAGCTACAGGTCTTTAGTATGATAGCTAACACATTCTTCCCTATCAGGATCCCACTGACCCGGGCATCCCTATACAGCAGCATGTTACAGCCTCTGATCAATAAGGTTAAAATATTAATGGTGACCAGGCTGAGGATAGGATATAGCATCATCTTGTGTGGGACTATATTGATGCCCTGCATGGAGATCTCACTAAGAGAGACACAGGGAAGGACTAGCAACAGGATGTAACAATAGAAGAACATCAGTCCTTCAGCCCACAGAGGGAGACCTTTCTTCAGGGGTTCCCAGAGATTAGCCTGAATATCCAGGATATCTAGCAGGTCCACCACCACCCAGAAC
>TU1944001
ATTTCCTTTGTAATTCTTCTTAATTAAAAAGACTCCACTGAATTCTAATTATAAAATTAAATCAACTCAATAACCGGTAAATTACTACATAAGCATTGAACGGCCCCTGTACTGAAACCCACAGGAGAGCAATAAACCACAGCAGATCAGGGGTCTTGTATATACATAATACTAGATCAAATAATGACATAGAAAACCAATTTAATTTAATGCCAAAGCATTTTGTTTCAAATGTAAATCATTTTAATTCTCTGTGTGGTATTCCTGAATGACTACATTGCGGaccatgccagatcttacaagcCTGGATAGGTTTAACATATCAGCATTCCATATCGTATGATAAAGTAAGCTGATGCTCACAGCCATTAGTTAATGGAATGTTTGCAATGCAGCCAGCTTGGAACGTGCCCATCAGCTCCCAACTCTGTAGTGCCAATGACTCCAATATTCAACTGATTAAAACTGAATTGTCCACTACAGCACAGGAACAACCATCTGTTGTTATATTCTAATAATGCAAGTATTTATCTTAACCTGTATTTTACTTCTTGTTTTTTGTTTAattataaaacattcattattCATTAAATCTGCAGGGAAATGAAGCCTTTAACAGAGTTCAGAGATCCTGTTCTTTACACCAGAATGTGTTGTCTTTAACAGAGTCTAGAGATCCTGTTCTTTACACCAGAATAGGTTGTCTTTAACAGAGTCTAGAGATACTGTTATTTGAATCCACAGAGGAAAGTCTTTAATTTGCAGAGTCTGGAGATACTGTTCTCTGAATCCACAGGGCAAATATTAAGAGTCTAGAGATACTGTTATTTACACTAGAAGGTGTTGTCCATGTCACCATATTATCCTTAAGGAGAGTTTCCACTGTGTTCCAATGATAATATACATTCAGATTGGTATTATAATCTTCTTTGTATCAAGGTTCTTCATAAACATTCTCCATGTCTCTGCTCTATACTCCATAAGGATCCTGCGTCCCTTTGATCAGTGACAATATCCATACACTGCTTTATGTTCTATTAGAAGTGTAAAGTGTCCTTCTGATCAGTGATAATATCCAGGGTATCCAAGGTTTTTCACATGATTTTGACCATTGCCCTGTAGAGTCCTGATGGTCATACATGATATTGGTACATCCATGTAGATTTTGGTCAGAGTCAGATGTTCCTGTGTGTCCCGTGTATAATATCCTGAGGGGCATACATACATGGTATGATCCTGGTCTCAGTCATGTATGTTGACATGTAGTTGTGACCTCTGGCAGAGGGAGGGGCAGGGCTGTCTGGTCCGGGAGGACCACCTGCGGGTGAGCGGTCATCACTATAGAAACAGGGCGTCCAAGACCCTGGTTACCATGGTGATGTggtacagagttcctctgtcgtTCCAACCCGAAAGCAGGAGGAGTGTTCGGTATCTGCTTCCTGTACTGGACGAAGCTACAGGTCTTTAGTATGATAGCTAACACATTCTTCCCTATCAGGATCCCACTGACCCGGGCATCCCTATACAGCAGCATGTTACAGCCTCTGATCAATAAGGTTAAAATATTAATGGTGACCAGGCTGAGGATAGGATATAGCATCATCTTGTGTGGGACTATATTGATGCCCTGCATGGAGATCTCACTAAGAGAGACACAGGGAAGGACTAGCAACAGGATGTAACAATAGAAGAACATCAGTCCTTCAGCCCACAGAGGGAGACCTTTCTTCAGGGGTTCCCAGAGATTAGCCTGAATATCCAGGATATCTAGCAGGTCCACCACCACCCAGAAC

Function

NR:

description
transmembrane protein 121-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1944000 False 1890 lncRNA 0.40 2 46524622 46526558
TU1944001 True 1796 lncRNA 0.40 2 46524622 46526558

Neighbor

gene id symbol gene type direction distance location
LOC110499530 LOC106590013 coding upstream 29124 46412512 ~ 46501346 (+)
disc1 LOC106595121 coding upstream 215673 46178601 ~ 46308949 (+)
tsnax tsnax coding upstream 350374 46157634 ~ 46174248 (+)
LOC118942078 NA coding upstream 498822 46022894 ~ 46025800 (+)
LOC118942022 NA coding upstream 844720 45678925 ~ 45679902 (+)
LOC110499521 msmb coding downstream 20079 46546637 ~ 46552961 (+)
mrpl2 rl2 coding downstream 36486 46563044 ~ 46577877 (+)
LOC118942483 NA coding downstream 54369 46580927 ~ 46588053 (+)
G1698931 NA non-coding upstream 73631 46367819 ~ 46450991 (+)
G1698960 NA non-coding upstream 83968 46430652 ~ 46440654 (+)
G1698935 NA non-coding upstream 143650 46379796 ~ 46380972 (+)
G1698921 NA non-coding upstream 158224 46326062 ~ 46366398 (+)
G1699002 NA non-coding downstream 8564 46535122 ~ 46535946 (+)
G1699003 NA non-coding downstream 9844 46536402 ~ 46537065 (+)
G1699023 NA non-coding downstream 64681 46591239 ~ 46591559 (+)
G1699024 NA non-coding downstream 65401 46591959 ~ 46592171 (+)
G1698884 NA other upstream 334201 46188945 ~ 46190421 (+)
G1698414 NA other upstream 823521 45700090 ~ 45701101 (+)
G1698413 i2b2b other upstream 827292 45696196 ~ 45697330 (+)
G1698119 yo84 other upstream 1412261 45111566 ~ 45112361 (+)
LOC110499568 LOC106589976 other upstream 1605290 44885773 ~ 44922697 (+)

Expression


Co-expression Network