LOC118942820 (LOC108442871)


Basic Information

Item Value
gene id LOC118942820
gene name LOC108442871
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60262 ~ 194218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956542.1
ACAtgtgtgttgtaatgtgtgtCCTTTGACAGACAGGAGGCGCTGTTAGCAGCCATCAGTGAGAAGGATGCCAACATCGCCCTGCTGGAGCTGTCCTCgtccaagaagaagaagacgcAGGACGAGGTGGCCAtgctgaagagagagaaggacagccTGGTACAACAGCTCAAACAACAGACCCAGAACCGTATGAAGCTGATGGCTGACAACTACGAGGCTGAGCATCTGAAGGCCTCCTCACGTTCTGAGCAGACCAATCACAAACCCTCCCCAGACCAGatcatccctcctctcctggaCCTGAACCAGAACCGCAGTAAGCTGAAGATGTATATTGGTCACCTGAGAGACCTGTGTCAGGAGAGAGACCCCCAGATCCTGCAGGACCTGacacctccctcctcctaccACAGCTCTCAACACACCGCCTGGGAGACACAGCTTCACAACATGACCCCAGAGCAGTTGGAGTCGGAGCTGgcggtgtgtgagagggagagtgcAGAACTCCAGGAGCATGCTAACTGTGTCCTGCAGCAGATTGCTGACCACTGCCCCGACATCCTGGAGCAGGTGGTCAACGCCCTGGAAGAGTCCTGCTGACCTGTCAATGTCCCCGCCAGCCACACTCTCACAACgcgtcaagagagagagagagagagatgcctttATATTCGCGATCCTTCATTTCCTGCCTTACCAGTTCTCCCAATATCTCTTTGGGGATTTGTTACTGATTTATTAACAATGATTTGTCAGATTGGTGCAACAATCCTCTAAATCTAAAAATGTTTGTGGTGAGAAGGCCTTCTTGAACCGTTCATGACGTTGAACCCTGTCTTTTTCTTAGACCTGACCACAAAACCTGTCCGTTACTAAGGTGTGGTCAACCATGTTATATTAGTGTTACTCACATACAGTTACTGCTTAGTTACTACACAGTTACTGCTTAGTTACTACACAGTTACTGCTTATGTACTGCTTAGTTACCACACAGTCACTGCTTAGTTATCATACAGTTACTGCTTAGTTACTACACAGTTACTGCTTATTTACTGCTTAGTTACCACACAGTTACTGCTTAGTTACTACACAGTTACTGCTTAGTTACCACACAGTTACTGCTTATTTACTGCTTAGTTACCACACAGTTACTGCTTAGTTACCATACAGTTACTGCTTAGTTACTACACAGTTACTGCTTAGTTACTACACAGTTACTGCTTAGTTACTACACATGTACTGCTTTGTTACTACACAGTTACTGCTTAATTACTACACAGTTACTGCTTAGTTACTACACAGTTACTACACAGTTACTGCTTAGTTACTACACAGTTACTGCTTAGTTAGTTACTGTCCTAATGGTGACTGTCCTAATGGGATGGGGATATCATTATGGCCAATATGAAGAGAAGCTAGAGACTCTGAATCATGGTCATGTACCCACTACTTAGACCATTCTAGAATCCCTCCTACAGCTTTCTGTCCTGTCGTCCTGCATTCcacatggaaccctattccctttatagaaccctattccctttatagaaccctattccctttatagaaccctattccc
>TU1944334
AGTGAGAAGGATGCCAACATCGCCCTGCTGGAGCTGTCCTCgtccaagaagaagaagacgcAGGACGAGGTGGCCAtgctgaagagagagaaggacagccTGGTACAACAGCTCAAACAACAGACCCAGAACCGTATGAAGCTGATGGCTGACAACTACGAGGCTGAGCATCTGAAGGCCTCCTCACGTTCTGAGCAGACCAATCACAAACCCTCCCCAGACCAGatcatccctcctctcctggaCCTGAACCAGAACCGCAGTAAGCTGAAGATGTATATTGGTCACCTGAGAGACCTGTGTCAGGAGAGAGACCCCCAGATCCTGCAGGACCTGacacctccctcctcctaccACAGCTCTCAACACACCGCCTGGGAGACACAGCTTCA

Function

NR:

description
novel protein similar to vertebrate RAB6 interacting protein 2 (RAB6IP2), partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956542.1 False 1585 mRNA 0.46 4 60262 194218
TU1944334 True 392 TUCP 0.55 3 60319 141249

Neighbor

gene id symbol gene type direction distance location
LOC118942821 wnt5b coding downstream 30911 225129 ~ 464574 (+)
LOC101268929 LOC101268929 coding downstream 285537 479755 ~ 566322 (+)
LOC118936449 LOC106575063 coding downstream 453691 647909 ~ 710000 (+)
LOC118942824 LOC106609805 coding downstream 658813 853031 ~ 999564 (+)
LOC110518351 LOC103459268 coding downstream 962496 1156714 ~ 1305903 (+)
G1699284 NA non-coding upstream 4850 45650 ~ 55412 (+)
G1699274 NA non-coding upstream 27658 32283 ~ 32604 (+)
G1699347 NA non-coding downstream 38706 232924 ~ 233994 (+)
G1699354 NA non-coding downstream 69552 263770 ~ 264713 (+)
G1699360 NA non-coding downstream 78552 272770 ~ 273083 (+)
G1699363 NA non-coding downstream 83923 278141 ~ 281102 (+)
G1699629 NA other downstream 888473 1082691 ~ 1086026 (+)
G1699655 NA other downstream 899931 1094149 ~ 1100221 (+)
G1699724 LOC106592130 other downstream 1148281 1342499 ~ 1343138 (+)
G1699804 NA other downstream 1343738 1537956 ~ 1538880 (+)
G1699253 NA non-coding downstream 8150 149399 ~ 204984 (+)
G1699326 NA non-coding downstream 17774 159023 ~ 159646 (+)

Expression


Co-expression Network