LOC118942822


Basic Information

Item Value
gene id LOC118942822
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 261114 ~ 265635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038451.1
GCACTGCAAACACCTAGAAGCACAGACTGTCTGGAATCACAGGCACTTCCTCTCTGCAGCTCAGGcaactgaaaacaccatccatcCCCTCCTAATCACGCACTGCAAACACTTAGAAGCACAGACTGTCTGAATTATGCTGAACCTTTCCCACTATGTATACCAGGTTAACTGAgggacagacagtgtggtgaagaaggagcaacagcacctctttaatctcaggaggctgaagaaattcagctcgGCCcctaacttctacagatgcaccattgagagcatcgtgtcgtgctgtatcaccgcctggtatggcaatcgCACCGTCCACAAACGCAGGAGACATGTGAGATGGTGCGGTCAGcctaacgcatcaccggggggcacactgcctgccctccaggacaactacagcccccggtgtcacaggaaggccaaggaTATCattaaggacctcagccacccgatcCAAGACCTGTTCACCCAAATATCATCTAgatggcgagAACCGGGTGCGATGTGGGGACAGATCCCAGCTGTAGATATGTGATTGGGAACAGCAGGAGTAGTGGAGCACCTGTGTTCAGCAGCTGCTAGTCCTGAAGCACATTCTGACCACACAGTGGATTGACTGTTGCaaccgtaacacacacacacaaacccacacctgcacaaaaacacacaacaaaaacacttttacagatgcacaattgagagcatc
>TU1945738
cactgcctgccctccaggacaactacagcccccggtgtcacaggaaggccaaggaTATCattaaggacctcagccacccgatcCAAGACCTGTTCACCCAAATATCATCTAgatggcgagAACCGGGTGCGATGTGGGGACAGATCCCAGCTGTAGATATGTGATTGGGAACAGCAGGAGTAGTGGAGCACCTGTGTTCAGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038451.1 False 718 mRNA 0.51 3 261114 265635
TU1945738 True 203 lncRNA 0.55 2 261712 265252

Neighbor

gene id symbol gene type direction distance location
LOC110517722 LOC106590767 coding upstream 80338 345973 ~ 348985 (-)
LOC118942823 NA coding upstream 315739 581374 ~ 597675 (-)
cacna2d4a cacna2d4 coding upstream 320100 585735 ~ 785374 (-)
LOC110516566 LOC106576623 coding upstream 558955 824590 ~ 851766 (-)
LOC110511372 LOC106592130 coding upstream 1053586 1319221 ~ 1348497 (-)
G1700232 NA non-coding downstream 3402 195319 ~ 257712 (-)
G1700277 NA non-coding downstream 15180 245601 ~ 245934 (-)
G1700268 NA non-coding downstream 33118 227438 ~ 227996 (-)
G1700264 NA non-coding downstream 42137 217445 ~ 218977 (-)
G1700229 NA non-coding downstream 56739 164610 ~ 204375 (-)
G1700290 NA non-coding upstream 3123 268758 ~ 268991 (-)
G1700305 NA non-coding upstream 65886 331521 ~ 332256 (-)
G1700310 NA non-coding upstream 84559 350194 ~ 354814 (-)
G1700311 NA non-coding upstream 86019 351654 ~ 352441 (-)
G1700318 NA non-coding upstream 105262 370897 ~ 372853 (-)
G1700312 NA other upstream 86852 352487 ~ 354509 (-)
LOC118942825 frs2 other upstream 1103514 1363229 ~ 1446417 (-)
LOC110512520 LOC106609724 other upstream 1856894 2113042 ~ 2128710 (-)
G1701041 NA other upstream 1922798 2188433 ~ 2189666 (-)

Expression


Co-expression Network