cacna2d4a (cacna2d4)


Basic Information

Item Value
gene id cacna2d4a
gene name cacna2d4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 585735 ~ 785374 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958447.1
atgttccaaccggagaattcctttgccTTCAGAAAAGCACttgaacgagagAAATACAAAGACATTGAGCCCACGGTGAAGATGGAGGAGGTGGACGGAGAGGAACTGGTGAAGAAGTTTGCTGAGGAGATGGAGGGCATGCTGGGTAGGAAGATGAAGTCTGTCAAGAGACTGGCGGAGGCAGCGGAGGACGCTGATCTATACCATGAATTCAACGCTACTTTAGAGtTCGACTACTATAACTCTATGCTGATCAACTCGGTGGATAAAGATGGAAACTCTATCGAGCTGGGAGGAGAGTTTCCTCTGGAAGAGAATGAACACTTCAACAAGCTCCAGGTCAACACTCTGCAGAGCGACATACAGGTTCCCACCAACGTTTACAACAAAGACCCTGGTATTCTAAACGGGGTGTACATGTCGGAGGCCCTGAACGATGTGTTCGTGGATAACTTCCAGAAGGACCCTACTCTAACCTGGCAGTACTTTGGCAGTGCCACTGGCTTCTTCAGACTCTACCCAGGCATCGCATGGACCCCAGATGAAAATGGTGTCGTCACGTTTGACTGCAGGAACAGAAACTGGTACATCCAGGCTGCGACCTCTCCCAAGGACATCATCATCGTAGTGGACGTCAGCGGGAGTATGAAGGGTCTCAGGCTCACTATCGCCAAGCACACTATTAACACCATCCTGGACACACTAGGGGAGAATGACTTTGTCAACGTCATCGCCTACAGCGACTATGTCCAATACGTGGAACCCTGCTTCAAGGGAACCCTGGTCCAGGCTGACCTGGACAACCGAGAGcacttcaaGTTGCTGGTTGAGGAGCTCCAGGTGAAAGGGGAGGGGAAAGTCAAGAAGGCCATGAAGGAATCCTTCAAGATCCTCAATGAGgcTGCATCGTTGGGTCAGGGTAGTCTGTGTAACCAGGCCATCATGCTGATCACTGACGGGGCCATGGAGGATTATGAGGAAGTGTTTCAGGAGTTCAACTGGCCAGAACGCAGGGTGCGTGTTTTTACTTACCTTATTGGTCGAGAGGTGACCTTCGCTGACACTGTGAAGTGGATTGCCTGCAACAATAAAGGTTACTACACACACGTCTCCACGCTGGCCGATGTTCAGGAGAACGTCATGGAGTACCTTCACGTTCTGAGTCGACCAATGGTCATCAACCATGATCATGACATCATCTGGACAGAGGCTTACATGGACAGTGCGCTGTTCAACACACAGGCTCAGAGCCTGCTCCTCATGACCTCTGTGGCCATGCCTGTGTTCAGCAAGAAGAAGGAGACGCTGTCTCATGGTATTCTGCTGGGGGTGGTGGGGACTGATGTTCCTCTGAGAGAACTGATGAGGCTGGCTCCTAGATACAAGCTGGGTGTCCATGGTTACGCCTTCCTCAACACCAACAACGGTTATATCCTCGCCCACCCTGCCCTCCGACCCCTGTATAAGGAGGGAAAGAAGCTGAAGCCAAAACCCAACTACAACAGTGTTGATCTGGCTGAGGTGGAGTGGGAGGACACGGATGAGACGTTGAGGACTGCCATGGTAAAAGGAGAGACAGGTACTCTGTCCTTAGACGTCAGAGCCACTGTAGAGAAAGGGAGAAGAGTCATGTTCCTGAAGAATGACTACTTCTACACAACCATCAACGAGACGCCGTTCAGtCTTGGCATGGTGCTGACCAGAGGGCACGGTGAATACATCTTCATAGGGAACGTGTCTGTTAGGGAAGGTCTCAATGACCTGATGCAGCCAGATGTTTCCATCGCAAATGAGTGgacCTACTGTGAGACAGACATTGACCCTCACCACCGCAAGCTGACCCAGCTCCAGGCTGTGTTTCGATACCTCACAGGGAAGGAACCTGATCTGGAGTGTGATGAGGAACTGTTGAGACAGACTCTGTTTGATGCTGTGGTCACAGCCCCCATGGAGGCTTACTGGACAGCATTGATGCTCAACCCATCTGGCATGGACGAGGGGGTGGAGACTGCGTTCCTGGGCACCCGGTCTGGTCTGATGAGGGTCACCAGATACGTGGGCATTGAGAAACGTGTTGCCAAGAAATTCCTGTCTCCGTCGGACAAGGAGAACATCTTTACGATGGACCACTTCCCCGTGTGGTATCGCCGCGCTGCAGAGTACCCCGCCGGCAAGTTCCTGTACTACATCCCCAAGGAGGACACCAGAGATACGTCAGGGAGGATGGTGATCGCCACCACAGCTGTGACTGTCACCGTGGGCAAGAAGACTGCAGTGGCAGGAGccaTTGGGGTTCAGATGGCACAGGACCTGTTAGAGACCAGGTTCTGGGCTACAGCTAAGCAGtctctctctctctctctctctcaggacctgGCCTGCTACCTCATCGACAGCAATGCTTTCATAATCATCTCCAAAGAAAAAAGCCATGTGGGGAGGTTCTTTGGAGAAGTTGACGGCTCAGTGATGGCACGCCTTATCAAGATGGGCATGTTCAAAAGggTATCTCTGTACGACTATCAGGCCATGTGTAAGATGGGAGGACATTCTGCCAGCAGCGCCAGACCCCTTCTTAGTccCTTCTATGGTCTGGCGGCTGCTCTAAAGTGGTTCCTCACCAACTTCCTGCTGTTTTTACTGGAGTTCAACATCTGTGGTCTCTGGCACTCTGACCGCTTTGCTGAAGCCAAGCCTGGCTTCAAAGCGTCGGCCCAGAAGAAGAAGGGAGACATCCTGCAGCCGTGTGACACTGAGTACCCCAGCTTTGTCTACGAGCCCTCCATCAAGGAGACCAACAGCCTCATTAAGTGTGGACGCTGTcagaagatgTTTGTAACCCAGGCTGTCCCTGACAGTAACCTGCTGATGTTGGTGGTACAGGCAGACTGTGACTGTTCCCGTCAGTACCCCGCTATCACCATGGAACCCAAGGAAGTGAAATATAACGCCTCAGTAAAGTGTGACAGGATGAAATCTCAGAAGGTCCGTAGGAGACCCGAGTCCTGCCACGCCTATCACCCTCAGGAAAACGCCAAGGAGTGTGGAGGAGCATCGCAGATctacctgtctgtttctctcttcctcacctGTCTCACTGCCTCGTTCACCTGTCTCAAGGCCTCCACGCTGGTCTTccgatgacagacagacagctacctAGCATAAACCCCGCCCCCTCTGGAAATCTCTCTAGAATGTTCCAGAA

Function

symbol description
cacna2d4 Enables voltage-gated calcium channel activity. Involved in calcium ion transmembrane transport and detection of light stimulus involved in visual perception. Part of voltage-gated calcium channel complex.

NR:

description
PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-4

GO: NA

KEGG:

id description
K04861 CACNA2D4; voltage-dependent calcium channel alpha-2/delta-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958447.1 True 3208 mRNA 0.52 34 585735 785374

Neighbor

gene id symbol gene type direction distance location
LOC118942823 NA coding downstream 2718 581374 ~ 597675 (-)
LOC110517722 LOC106590767 coding downstream 236750 345973 ~ 348985 (-)
LOC118942822 NA coding downstream 320100 261114 ~ 265635 (-)
LOC110516566 LOC106576623 coding upstream 39216 824590 ~ 851766 (-)
LOC110511372 LOC106592130 coding upstream 533847 1319221 ~ 1348497 (-)
LOC110527029 LOC106592131 coding upstream 563225 1348599 ~ 1357031 (-)
LOC118942825 frs2 coding upstream 577855 1363229 ~ 1446417 (-)
LOC110499705 LOC106609801 coding upstream 663430 1448804 ~ 1453886 (-)
G1700387 NA non-coding downstream 19416 563762 ~ 566319 (-)
G1700396 NA non-coding downstream 33932 548312 ~ 551803 (-)
G1700358 NA non-coding downstream 35159 476903 ~ 550576 (-)
G1700385 NA non-coding downstream 42263 542441 ~ 543472 (-)
G1700365 NA non-coding downstream 95914 488294 ~ 489821 (-)
G1700482 NA non-coding upstream 3854 789228 ~ 798363 (-)
G1700500 NA non-coding upstream 46645 832019 ~ 832544 (-)
G1700522 NA non-coding upstream 89670 875044 ~ 878302 (-)
G1700534 NA non-coding upstream 114397 899771 ~ 900130 (-)
G1700312 NA other downstream 231226 352487 ~ 354509 (-)
LOC110512520 LOC106609724 other upstream 1337155 2113042 ~ 2128710 (-)
G1701041 NA other upstream 1403059 2188433 ~ 2189666 (-)
G1701824 NA other upstream 1787300 2572603 ~ 2577051 (-)

Expression


Co-expression Network