LOC118936449 (LOC106575063)


Basic Information

Item Value
gene id LOC118936449
gene name LOC106575063
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 647909 ~ 710000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956546.1
CGGCCGGAGATCGATGAGAGGATTATACCAACAGCTCTTTCTCTCCGTTTCTTTATGTTAGGATAGATTTTTTTGTGTCCGTTTTGGTTTTGGCGTTGGGGTTGGTGGTGGGTGGCTGGTATTTTGGAAGggCGGAGTATCTCCTCCTTGCCCCTTTCCCCAGGAGGAGGCTGGCATCGGGGCTTCCTGATGCCAGGGCTCGTCTAGAGAGGGTGGACGCGGGACGCTCCGACATGCCCCACCCCCTTCCCTCTGCCGGGCCCCCTGATTGGCGGAGCCAGGGGAGGACCTCGCACACAACCAAACCAACCAGACCTGTTCTGCTGTGtctcctgtgtgtcctgtcttcCCTGGTGGATCTAACCACCGCCTGTCCTCCGACCTGCTTCTGCAACGCCACCGACGTAGACTGCAGCGGGCGCGGCCTGCTCTCCATGCCCGCCCTCACCCATCTCCCCGTCTCCGCCCGCACCCTCCTGCTGCCCAACAACCACCTCTCCTCCCTGGGTCCAGGGTCCTTCGCTAACCTCACCTCCCTGGAGCGACTGGATCTCTCCAACAACCACCTCTCCTCCCTGGGTCCAGGGTCCTTCGCTAACCTCACCTCCCTGGAGCGACTGGATCTCTCCAACAACTACCTGGATAATCTTCCCCCAGCGCTCTTCAAGGACCTGGGGAATCTATCAGATCTGACCCTCCACAACAACAGTCTTAGGGCCTTGGATAGGGATCTCTTCCAGGGGCTGGTGGGGCTGAGGAAGCTAGATGTCTCCCTCAACGGGCTGTCTGATATCCCCCTGGGTCTGCTGGATGAGCTGCAGGGGCTGACGTGGCTCTCCGTGGCCGGGAACAGGCTCCATGCCCTGGAGAGAGCAGCCTTCGAGCCCCTGGCTAACCTCCAGTCTCTTCAGCTAGGGGCTAACCCCTGGGAGTGTGACTGCAACCTGAGGGACTTCAAGCACTGGATGGAGTGGCTGCTGTACAGAGgtggtAAGGTAGATGGGGTGGAGTGTACCCTCCCTAAGGACCTGCGAGGGCGGGACATCCGTGGTGTTCCAGTGGAGATGTTCAACTACTGCCTCCAACTGGATGACGAGaacaggggaggaggggggcCGCGGAGCGGAGGAAAAGAAGGTTCATCCCCGCCCTGCGGCCGAACTACCGGCCCCGGAGCCCCCACATCCGAATCTGAAGTCCCCGCTGCGGGCGACCTGGTGCCCGTCCCGGACTGTGTGCGGCGGCGCTACCAGCCGGTGAGCGTGCGGAGGGCCATCGGGACGGTGGTGATAGCCGGGGTTGTGTGTGGCATCGTGTGTATCATGATGGTGGGGGCGGCGGCCTACGGATGTATCTATGCCTCGCTCATGGCCAAGTATCAACGAGAGCTGAAGAAGAGGCAGCCGCTGATGGGAGACGGGGAGGGTGACGCAGACCCTGAGGACAAGCAGATCTCCTCTGTGGCAtagaggggtcaggggttagagatcAGGGGTCAAGGTTGAAAGGGCTCTATTACTCCTCTCCCTccgcctcctctccccctgaAACCAACCAGCTCCTGCTACTGTCTTCTCTATCTCCACCAAACGACAATCACAATgggtcctctcctccattctgaaCCCTGTTCTCATTCTGAGATGAGATAGATATGTATGAGTCAGACCACTAGACAACCGCCTGATAGGGTGATCAACAAACTCTGAAACTTCAATGACCCTTCTCTATCCCTCAGCCCACAAACCCCACAGCCCTGCAGAAACAAGAACTGGGTCTGGTTTGGCTTGGTCTGGACTGGTCTGATTTGACATGGTCTGGTTTGGCAGGACATGGTGGAGGGATGGCCtgattctctctgtcctctccctcctgttgttctctgagatggagggatggcctgattctctctgtcctctccctcctgttgttctctgagatggagggatggcctgattctctctgtcctctccctcctgttgttctctgagatggagggatggcctgattctctctgtcctctccctcctgttgttctctgagatggagggatggcctgattctctctgtcctctccctcctgttGTTCTCTGAGATGGAGGGTTGGCCAGACGCTCAGAGGGATATTAAAAAATAAGGGATTAAAAGATGCTGCTATTGtctttcatccctccctccctttcatccctccctctgtgtTCCCACCTGCTGTAAGAGTACACAACCGTTGTGGGgacttttcctctcccctcctcccctcatcctccctTTCATCCCTCTGTTCCCACCTTCAAGAGGAGTACACCCACGCTGTGGggacttctctcctctcttccctgtctGTGTAATCTCTATGGATGGGACATCAACCTCTCCTACTAACGAGCAGGATCTTCCCCCTCACCCCTGAATTGGCTGGACAAACAAAGCGTATATTATTCTATACTGCTCTCTGGTTTAGGTGATTTAATATAGCCTCTATTACATGCAGTGACCCAACTCCTGGGTTTTGATAAACATTCATTTGGTCCCGTATCGGTTTTTCATTTGGTGGTGCTGGTTTTGTTTGGGTGATAACCTGATATCCTGTAACGTTTTAGAGCTGGTTAGATTTGCTCCGACAAAAACCCTTCAGGTATACCGTCTTGCTAGCGATGTTGGTAATAAAAAACTAACTGAATCCAGTTGTTAAATGGGTCATAACCcacgtacagtacagtacagtaccacagTTCTCTGTGATGGGGAATGAGACCCTGGATCACTACCCAGGATTCCATAGTAGCTTGGGAGGCGTGTCTTGACAACACATCTGTATATGATGGTAGATAAACAGGCTGATGCCGATGAAAGAGAACTAGAGACAGATCAAATGGGATCAAATGGGATGTAATGGGATGTATGGGATGTAATGGGATGTATGGGATGTAATGGGATGTAATGGGGGATGTAATGGGATGAAATGGGATGAAATGGGATG

Function

NR:

description
leucine-rich repeat and transmembrane domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956546.1 True 2980 mRNA 0.55 4 647909 710000

Neighbor

gene id symbol gene type direction distance location
LOC101268929 LOC101268929 coding upstream 81587 479755 ~ 566322 (+)
LOC118942821 wnt5b coding upstream 183335 225129 ~ 464574 (+)
LOC118942820 LOC108442871 coding upstream 453691 60262 ~ 194218 (+)
LOC118942824 LOC106609805 coding downstream 143031 853031 ~ 999564 (+)
LOC110518351 LOC103459268 coding downstream 446714 1156714 ~ 1305903 (+)
LOC110499702 tcpb coding downstream 766880 1476880 ~ 1487165 (+)
LOC118943024 NA coding downstream 774027 1484027 ~ 1484168 (+)
LOC110499710 LOC106596118 coding downstream 779693 1489693 ~ 1500056 (+)
G1699462 NA non-coding upstream 58521 585991 ~ 589388 (+)
G1699455 NA non-coding upstream 62112 548316 ~ 585797 (+)
G1699456 NA non-coding upstream 88208 556730 ~ 559701 (+)
G1699452 NA non-coding upstream 103928 543265 ~ 543981 (+)
G1699510 NA non-coding downstream 18434 728434 ~ 729118 (+)
G1699513 NA non-coding downstream 28067 738067 ~ 743248 (+)
G1699523 NA non-coding downstream 69772 779772 ~ 781362 (+)
G1699532 NA non-coding downstream 90649 800649 ~ 802742 (+)
G1699534 NA non-coding downstream 99034 809034 ~ 809603 (+)
G1699629 NA other downstream 372691 1082691 ~ 1086026 (+)
G1699655 NA other downstream 384149 1094149 ~ 1100221 (+)
G1699724 LOC106592130 other downstream 632499 1342499 ~ 1343138 (+)
G1699804 NA other downstream 827956 1537956 ~ 1538880 (+)

Expression


Co-expression Network