LOC118942824 (LOC106609805)


Basic Information

Item Value
gene id LOC118942824
gene name LOC106609805
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 853031 ~ 999564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956555.1
CTCGACGTGAATGAGATGGGGTTgcatatactgtaggctatagcctGTCTTATTTTCTATTTGAATATCGCAACATAACCTATTTGTTTCTGGCCTATAGGGATTCACTTGAAATGGTGGTTGTATCTGTGTAACACGTTCGTGCCGAAtcaaattgagcatgttttgcGGTTCCCATCTGGGTGTAAACATTACGCATATTTTGGCCACGTTTGACGCGCGTAAAATCGAGGTCTTGGAAATCAACATGTAGCCGACTAAGGTGTAAACTTAATTATCTTCCATCGGCTTCCCATAAATGTGTATATTAAACCACTAAGGCATTTAAAAAAACGGCATGTTTACAAACTGGTTAGCCTGCTATTGTCAGTGATACAGGTCTCACGTTTGGGATTGAATCCATCCAGATATAATTCAAGTCAGGTTTAACTGATTTCCTCCTTCCTTGTTACATCCTCCAGAAATCAAAGCACAAGCCCGATCTGACTTCACTGTGATTATTTAGCTCCCTCTCCAGAGATAGCAAGTCTGGAAAATCATGGACGGTTTACTCTGTTTTCTAACGTTGTAACAGGCTAACATCTGGAACCAGTCAGATCGTCTACAGGGGAGGGGGCTTGGtcgtcacccccctctctcttgtgcgctctccctctctttcctctcaccaGACAATATCACTGCAGAAAGGTACAAGCGGCCGCTCTCCACAGGGCTATTGAACAACTCCCGTTTCGTACGATTTTGGCCTGGAATTGATGACAGAAAGTATCTGTAAATGAGGCACGCCACGTGTATTTGcctgtttttttggacagcattTGGTGGAATCGATTCTATTGGAAGATTTAACCCTGTGTGAGCAGCAGTTCTGGAATATAGATCTTTTTTTTGTTGCGCTGAGAGCTTGAATCTATTCCTTTTACGGCATCAGTGGCAGCGCGCGGGGTTTGGTGTCATTGGTCCGGCTTTTGATGCACCCTATTTAAAACATCTGCGGGCAAATTGATAGGATTTTGATTCATAGGTAGGCTAGCAGCAAATGGTGCTAGTGCCATGTTTCTTAGGTAGGACCCGGATGTTCCGAGGATGCACTGGTTCGTCTTCTTAGGTGGTTCAAGCGAATATCTATTTATGTGTTCCAACTCCAGAATGGGGATCAGGTAATATTTACTGAAACGCAACAAAAAAAAGGAATATCGAAAGCTGTCCGGGCgttattctttttttattttccttctctttggtttcttttttttcttcctctACTCCTTTTTACAAGCCTTTTCTCCATTCACCTACGGATAAAGCTGGACCACATTTATGGTAAATGAAAGCAAAAACATGTACATACCAGAGGACACCCTTGAGAACCATCAAGgctccgACTACTCCCCCCCACCGCTGCCGGTGGTGGCGCCCAGTCTGAACGATACCAGCGTTGCAGATGGAGGAGGCGGCGTGGGTGGCGTCACAGCCCTGGGTGGAAGTGGAGGTGGGCGCGGGCCCCTGGAGGCCGTGGTCGGAGGGGCGGTGGTGGGGCTAGCGGCAGAGCACATCCCCAGCGGCCCCGGGGCGGCCCTCACCTGGCAGGCGGCCATCGAGGCGGCGCGGCAGGCCAAGCAGATGGGGAACGCGGGCGCACCCATCTGCACAGCCAGCTCCACACAGAGGAAGAGGCAGCACTACACCAACAAGCCCAAGAAACCCATCAACACAGCCCCAACCAGACCTCCCAGAGCCCTGCTCTGCCTCACCCTCAAGAACCCCATCCGCAGAGCATGCATCAGCATCGTGGAGTGGAAACCGTTTGAAATTATCATTTTGATGACTATATTTGCGAACTGCGTGGCCTTAGCTGTCTACATCCCCTTCCCAGAGGACGACTCCAACGCCACCAACTCAAACCTGGTAAGTCACACCTGACCTGACACAGGCTCTTATGTCATGTTGCTATGGTTATTCCGCTCTGTTTGACTGTAGGTACcaggtggctgtgtgtgtgggggggttgagTTGTCGTGGTTACCTGTATCCCCATCCTCCATGTTGTGGTTTGGAGAGAACAGGGCATGTGGAGGGCAGCTAATACGTTGCCTTGGGACTTCTGTatggtacatactgtatgtgttggtgtCTGAGCATATGTACACGGTGTCTGATCATGTACATGGTGTCTGATCATGCACATGGTGTCTGATCATGTACATGGTGTTTGAGTAGAGTGAGTGGAGGGAatgtggggctcccgagtggcgcaggggtctaaggcactgcatctcagataGAGGCGTCACTGTAGTCAATGGTTccaatccaggctgcatcacatctggctgtgattgggagtcccatagggtggcgcacaattggcccaggtttggccggggtaggccgtcattgtaaataagaatttgttcttatctgactttcCTAATTACATTTTATAATGTGTGGTGATCTGGTCCtcctgtgtgttactgtgtgtggttGAGATGGTAACTGCTGGCTGTGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCtcctgtgtgttactgtgtgtggttGAGCCGGTAACTGCTGGCTGTGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCtcctgtgtgttactgtgtgtggttGAGATGGTAACTGCTGGCTGTGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTGTGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTGTTACTGTGTGTGGTTGAGCCGGTAACTGCTGGCTGTGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGATGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCtcctgtgtgttactgtgtgtggttGAGATGGTAACTGCTGGCTGTGTGGTGACCTGGCCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCtcctgtgtgttactgtgtgtggttGAGCCGGTAACTGCTGGCTGTGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCtcctgtgtgttactgtgtgtggttGAGATGGTAACTGCTGGCTGTGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTATGTGGTGACCTGGTCCTCCTGCTGGCTGTGCGGTGACCTGGTCCTCCTGCTGGCTGTGCGGTGACCTGGTCCtcctgtgtgttactgtgtgtggttGAGACGGTAACTGCTGGCTGTGTGGTGACCTGGTCCTCCTGCTGGCTGTGCGGTGACCTGGTCCtcctgtgtgttactgtgtgtggttGAGATGGTAACTGCTGGCTGTGTGGTGACCTGGTCCTCCTGCTGGCTGTGCGGTGACCTGGTCCtcctgtgtgttactgtgtgtggttGAGACGGTAACTGCTGGCTGTGTGAAGTTAATATGAATGGTTAATGTGGAACTACTAGCCAGGAGAATGGTTAATGTAGAACTACTAGTCAGGAGAATGGTTAATGTAGAACTACTAGCCAGGAGAATGGTTAATGTAGAACTACTAGTCAGGAGAATGGTTAATGTAGAACTACTAGTCAGGAGAATGGTTAATGTAGAACTACTAACCAGGAGAATGGTTAATGTAGAACTACTAACCAGGAGAATGGTTAATGCAGAAATACTAACCAGGAGAATGGTTAATGTAGAACTACTAGTCAGGAGAATGGTTAATGTAGAACTACTAATGTCTGTCAGAACTGGAGATGGACTCAtcatctccctatttctctctctctctctctctctctctctctc

Function

NR:

description
PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1C-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956555.1 True 4288 mRNA 0.51 3 853031 999564
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118936449 LOC106575063 coding upstream 143031 647909 ~ 710000 (+)
LOC101268929 LOC101268929 coding upstream 286709 479755 ~ 566322 (+)
LOC118942821 wnt5b coding upstream 388457 225129 ~ 464574 (+)
LOC118942820 LOC108442871 coding upstream 658813 60262 ~ 194218 (+)
LOC110518351 LOC103459268 coding downstream 157150 1156714 ~ 1305903 (+)
LOC110499702 tcpb coding downstream 477316 1476880 ~ 1487165 (+)
LOC118943024 NA coding downstream 484463 1484027 ~ 1484168 (+)
LOC110499710 LOC106596118 coding downstream 490129 1489693 ~ 1500056 (+)
LOC110517600 rab3ip coding downstream 517798 1517362 ~ 1600082 (+)
G1699539 NA non-coding upstream 31793 821005 ~ 821238 (+)
G1699534 NA non-coding upstream 43428 809034 ~ 809603 (+)
G1699532 NA non-coding upstream 50289 800649 ~ 802742 (+)
G1699523 NA non-coding upstream 71669 779772 ~ 781362 (+)
G1699463 NA non-coding upstream 74841 626754 ~ 778190 (+)
G1699625 NA non-coding downstream 16576 1016140 ~ 1016467 (+)
G1699632 NA non-coding downstream 47895 1047459 ~ 1048172 (+)
G1699643 NA non-coding downstream 65112 1064676 ~ 1068643 (+)
G1699652 NA non-coding downstream 87499 1087063 ~ 1087617 (+)
G1699659 NA non-coding downstream 102362 1101926 ~ 1124073 (+)
G1699629 NA other downstream 83127 1082691 ~ 1086026 (+)
G1699655 NA other downstream 94585 1094149 ~ 1100221 (+)
G1699724 LOC106592130 other downstream 342935 1342499 ~ 1343138 (+)
G1699804 NA other downstream 538392 1537956 ~ 1538880 (+)

Expression

LOC118942824(LOC106609805) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.8.
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LOC118942824(LOC106609805) Expression in each Bioproject

Bar chart with 19 bars.
LOC118942824(LOC106609805) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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Co-expression Network