LOC110511372 (LOC106592130)


Basic Information

Item Value
gene id LOC110511372
gene name LOC106592130
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1319221 ~ 1348497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956557.1
TTGTGCTGACGTGTTACGTTCACTTTGTACTGTAACTTGGGCCTTGTCAATAAATATTTATGTTTGGAGCTTTCAGCTGCTAGTTGGTGTCTTTGCTCACTTGGGTAAAGATCTCCAGTCTGTAAGAGCATTATTATAGGATTAATACGTGCACCATTGACCAATGGCCTAGTTTAGATATTCCGAAAAATAATGTTTTAAGCTATTTTTTTTAGACATTTCCAAAATCATGTGTTCATTGCAATTGCAAATGAATGAGCAGTTTCGGCACGTAGTTTCTTGCATATCGGAAAGAGGAGGATTTTAATAGGCTGCTTTAATTTCGTCACATGGTAGGGTTTTTCACGGACGTCAGAAGCCTTGCCTGGTAGGCTGGTACCAGTGCGTTGTGCGAACATTGGCGGTGCTTGCAGGGCACTTTTCCCCCACACAGTTCTGCGGATATCTCGCCGTAACAATATCAGAAGAAATGTCGCGCCACTGACGGATTTTACAAGTCGCCCTTGACTTTTATTCTATACGTTTTCAGACCCGGAGCCCAACACTGTCCCCCCATGGAGGAGAgcggaggagcaggaggagaggtgcATGAGAACCAGGTgttgatggaggagaggggtgtcTCTCCTGGAGATTCCCCAGGGACGGAGGAGGGTTCCCCAGCCGTGGTCCGGCCCCGtgacccccccacctccaccctgCAGGACGCAGGGCCTCGGAAGAGCAGCTCCTCCCGCTCCTCCAGGAAGAGCTTCCGTCTGGACTAccggttggaggaggaggtgactGGGTCGAGCCGGGACAAACATGGCCGCTTCACAAACCCCTGGTCCACGTGGAAGTTCCCGTCCTGGTCCACCCTGCTGCGTTTCTTCCTGCTGGAGAAGGATCACAGTAATGTACCCAGCTCTAAAGAGGTCTTAGACAAAGAGCTCCCAGTAGTGGAGCCTTGGTTCCTCCGTGTCCCCGAGGCAGCCGACGGAGCCGTGGGGTCTGGTCTCAGGGTGACCTGGCTGGGCCACGCATCAGTCCTGGTAGAGATGGACGGCCTGGTCATCCTCACTGACCCCATCTTCAGCCAGAGGGCGTCTCCCTTCCAGTTCATGGGCCCCAAGAGGTACCGGGATCCCCCTTGTACGGTTGATCAACTCCCCCGGATCGACGCGGTTGTAATCAGCCACTCCCACTACGACCATCTGGACGCCGGCACCGTGACCCAGTTGAACGAGCGGTTCGGTGGGGATCTCCGATGGTTTGTGCCGTTGGGACTCATGGACTGGATGCAGAAGAGCGGGTGTGAGAAtgtgatagagttagactggtggGAGGAGAACTGTGTGCCAGGTCACGACGAGGTCACGTTTGTGTGTACGCCGGCGCAGCACTGGTGCAAGCGCACCCCCACGGACGATAACCAGGTGCTGTGGGGGAGCTGGTCTGTCCTGGGGCCCTGCAACCGCTTCTTCTTTGCTGGAGACACCGGCTACTGCTCGTCCTTCCAGGAGATTGGGAGGCGCTTTGGTCCGTTCGACCTGGCTGCCATACCCATCGGCGCGtacctgcccagAGATGTAATGCGTGGACAGCATGTGGACCCGGAGGAGGCTGTGCAGATCCACAAAGACATCCAGGCCAGACACTCCCTGGCTATTCACTGGGGAACCTTCGCTTTAGCTTACGAGttttaCTTAGAGCCTCCAGTGAGACTCAGGGAGGCCATGGAGAAGAATGGGTTGAATGTGGAGCACTTCTTTGTCCTGAACCATGGAGAATCCAGAGTGCTGAACACAGACCAGGAAGTCTTTGAATGATTGGACCAAAATGGTGCCTAAGCCCCTCCCACAAGCTGTAGAAGACTAAAACAACACTGTGGCGTAAAGCATACAGCTGAATCAATGGTATAAGCTCTCATCGTCAACAGTCTAGTTGATGGCATACTAGAGAGCTGAATGATGGCGACTATGAAATGAACACCCTGTCCATTTATCCAATCGTTGTTTTTCTATGCCAAATGTCTGACGCCAGAACTGTCAAGAAGAAACCTTTCTGAAAATGTTTTGCAGATGATGTGTTGTCGTATAGCTGCAGTGTCACCAGTCGTGTCAACGTGATGAACGTGTGTATTTtacacactggacacaccacaCGTCATTCTGCTCCGACTCACACATTGTTTCTGTGCACAACTACAATGTGTATGGCTTCATCGTCTAGCACATTCACCGATCACATTTTGTAGCGTTATGTAACCAAATCTTCTGGAGTTATCGAATGCTGAACAGTTCctgtgtaatatactgtaagtACTTGGACGTTGCAATAATGTTTTAGTAGGTCTGGAAACACGTTGTTGTATGTGGGGGTTTTCACCCTCCTCCGTGTTACAGCTGTCATTAAAACTCTGCTCTCTGAAGGACACA
>XM_036956556.1
CCAACTGTGACCAACTTTCAAGAGTTCCTGTTGTAAACACAATACCGTTACTAGTTTGATGTTTCTATAATTGTAATCTAAGCAATTATGGTTAGGCCAACTAGACCAAGTCAACTAAGCAACGCATTCCGACTATGGCTGCTTCCAAATGCATCTTCACTCCACGAGTTTGGAAAACGACACTTTCAAGGTGTATTCACCGAGCCGCAAGTGTTCTGAACACAGCGAAGGGAACTTTGTCAAGACCCGGAGCCCAACACTGTCCCCCCATGGAGGAGAgcggaggagcaggaggagaggtgcATGAGAACCAGGTgttgatggaggagaggggtgtcTCTCCTGGAGATTCCCCAGGGACGGAGGAGGGTTCCCCAGCCGTGGTCCGGCCCCGtgacccccccacctccaccctgCAGGACGCAGGGCCTCGGAAGAGCAGCTCCTCCCGCTCCTCCAGGAAGAGCTTCCGTCTGGACTAccggttggaggaggaggtgactGGGTCGAGCCGGGACAAACATGGCCGCTTCACAAACCCCTGGTCCACGTGGAAGTTCCCGTCCTGGTCCACCCTGCTGCGTTTCTTCCTGCTGGAGAAGGATCACAGTAATGTACCCAGCTCTAAAGAGGTCTTAGACAAAGAGCTCCCAGTAGTGGAGCCTTGGTTCCTCCGTGTCCCCGAGGCAGCCGACGGAGCCGTGGGGTCTGGTCTCAGGGTGACCTGGCTGGGCCACGCATCAGTCCTGGTAGAGATGGACGGCCTGGTCATCCTCACTGACCCCATCTTCAGCCAGAGGGCGTCTCCCTTCCAGTTCATGGGCCCCAAGAGGTACCGGGATCCCCCTTGTACGGTTGATCAACTCCCCCGGATCGACGCGGTTGTAATCAGCCACTCCCACTACGACCATCTGGACGCCGGCACCGTGACCCAGTTGAACGAGCGGTTCGGTGGGGATCTCCGATGGTTTGTGCCGTTGGGACTCATGGACTGGATGCAGAAGAGCGGGTGTGAGAAtgtgatagagttagactggtggGAGGAGAACTGTGTGCCAGGTCACGACGAGGTCACGTTTGTGTGTACGCCGGCGCAGCACTGGTGCAAGCGCACCCCCACGGACGATAACCAGGTGCTGTGGGGGAGCTGGTCTGTCCTGGGGCCCTGCAACCGCTTCTTCTTTGCTGGAGACACCGGCTACTGCTCGTCCTTCCAGGAGATTGGGAGGCGCTTTGGTCCGTTCGACCTGGCTGCCATACCCATCGGCGCGtacctgcccagAGATGTAATGCGTGGACAGCATGTGGACCCGGAGGAGGCTGTGCAGATCCACAAAGACATCCAGGCCAGACACTCCCTGGCTATTCACTGGGGAACCTTCGCTTTAGCTTACGAGttttaCTTAGAGCCTCCAGTGAGACTCAGGGAGGCCATGGAGAAGAATGGGTTGAATGTGGAGCACTTCTTTGTCCTGAACCATGGAGAATCCAGAGTGCTGAACACAGACCAGGAAGTCTTTGAATGATTGGACCAAAATGGTGCCTAAGCCCCTCCCACAAGCTGTAGAAGACTAAAACAACACTGTGGCGTAAAGCATACAGCTGAATCAATGGTATAAGCTCTCATCGTCAACAGTCTAGTTGATGGCATACTAGAGAGCTGAATGATGGCGACTATGAAATGAACACCCTGTCCATTTATCCAATCGTTGTTTTTCTATGCCAAATGTCTGACGCCAGAACTGTCAAGAAGAAACCTTTCTGAAAATGTTTTGCAGATGATGTGTTGTCGTATAGCTGCAGTGTCACCAGTCGTGTCAACGTGATGAACGTGTGTATTTtacacactggacacaccacaCGTCATTCTGCTCCGACTCACACATTGTTTCTGTGCACAACTACAATGTGTATGGCTTCATCGTCTAGCACATTCACCGATCACATTTTGTAGCGTTATGTAACCAAATCTTCTGGAGTTATCGAATGCTGAACAGTTCctgtgtaatatactgtaagtACTTGGACGTTGCAATAATGTTTTAGTAGGTCTGGAAACACGTTGTTGTATGTGGGGGTTTTCACCCTCCTCCGTGTTACAGCTGTCATTAAAACTCTGCTCTCTGAAGGACACA
>TU1946269
TATATtcacttagaatgtattaaaGTCAACTGAAGTTCAGTAAGTTTATTATGCCTTCATTAGGCCAAACCCACAAAACACAAGTTTGTCGTCCCTCAGAGATGTAATGCGTGGACAGCATGTGGACCCGGAGGAGGCTGTGCAGATCCACAAAGACATCCAGGCCAGACACTCCCTGGCTATTCACTGGGGAACCTTCGCTTTAGCTTACGAGttttaCTTAGAGCCTCCAGTGAGACTCAGGGAGGCCATGGAGAAGAATGGGTTGAATGTGGAGCACTTCTTTGTCCTGAACCATGGAGAATCCAGAGTGCTGAACACAGACCAGGAAGTCTTTGAATGATTGGACCAAAATGGTGCCTAAGCCCCTCCCACAAGCTGTAGAAGACTAAAACAACACTGTGGCGTAAAGCATACAGCTGAATCAATGGTATAAGCTCTCATCGTCAACAGTCTAGTTGATGGCATACTAGAGAGCTGAATGATGGCGACTATGAAATGAACACCCTGTCCATTTATCCAATCGTTGTTTTTCTATGCCAAATGTCTGACGCCAGAACTGTCAAGAAGAAACCTTTCTGAAAATGTTTTGCAGATGATGTGTTGTCGTATAGCTGCAGTGTCACCAGTCGTGTCAACGTGATGAACGTGTGTATTTtacacactggacacaccacaCGTCATTCTGCTCCGACTCACACATTGTTTCTGTGCACAACTACAATGTGTATGGCTTCATCGTCTAGCACATTCACCGATCACATTTTGTAGCGTTATGTAACCAAATCTTCTGGAGTTATCGAATGCTGAACAGTTCctgtgtaatatactgtaagtACTTGGACGTTGCAATAATGTTTTAGTAGGTCTGGAAACACGTTGTTGTATGTGGGGGTTTTCACCCTCCTCCGTGTTACAGCTGTCATTAAAACTCTGCTCTCTGAAG

Function

NR:

description
N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956557.1 False 2420 mRNA 0.52 6 1319221 1347903
XM_036956556.1 False 2135 mRNA 0.53 6 1319221 1348497
TU1946269 True 946 TUCP 0.44 2 1319227 1323363

Neighbor

gene id symbol gene type direction distance location
LOC110516566 LOC106576623 coding downstream 467455 824590 ~ 851766 (-)
cacna2d4a cacna2d4 coding downstream 533847 585735 ~ 785374 (-)
LOC118942823 NA coding downstream 736204 581374 ~ 597675 (-)
LOC110517722 LOC106590767 coding downstream 970236 345973 ~ 348985 (-)
LOC118942822 NA coding downstream 1053586 261114 ~ 265635 (-)
LOC110527029 LOC106592131 coding upstream 102 1348599 ~ 1357031 (-)
LOC118942825 frs2 coding upstream 14732 1363229 ~ 1446417 (-)
LOC110499705 LOC106609801 coding upstream 100307 1448804 ~ 1453886 (-)
LOC110499704 cpsf6 coding upstream 106069 1454566 ~ 1513068 (-)
LOC110511332 LOC106576651 coding upstream 151934 1500431 ~ 1516184 (-)
G1700712 NA non-coding downstream 3271 1312956 ~ 1315950 (-)
G1700697 NA non-coding downstream 36152 1281085 ~ 1283069 (-)
G1700658 NA non-coding downstream 113556 1205145 ~ 1205665 (-)
G1700621 NA non-coding downstream 181550 1124574 ~ 1137671 (-)
G1700612 NA non-coding downstream 215373 1098247 ~ 1103848 (-)
G1700726 NA non-coding upstream 9067 1357564 ~ 1359669 (-)
G1700701 LOC106593264 non-coding upstream 68171 1416668 ~ 1485260 (-)
G1700710 NA non-coding upstream 93700 1442197 ~ 1500408 (-)
G1700702 NA non-coding upstream 137544 1486041 ~ 1487164 (-)
G1700312 NA other downstream 964712 352487 ~ 354509 (-)
LOC110512520 LOC106609724 other upstream 774032 2113042 ~ 2128710 (-)
G1701041 NA other upstream 839936 2188433 ~ 2189666 (-)
G1701824 NA other upstream 1224177 2572603 ~ 2577051 (-)
G1701930 NA other upstream 1435445 2783942 ~ 2829582 (-)

Expression

LOC110511372(LOC106592130) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

LOC110511372(LOC106592130) Expression in each Bioproject

Bar chart with 21 bars.
LOC110511372(LOC106592130) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
End of interactive chart.

Co-expression Network