LOC118942825 (frs2)


Basic Information

Item Value
gene id LOC118942825
gene name frs2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1363229 ~ 1446417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956564.1
gcttgtacaaacacacacacacagaatcttGACGCCCCATTTACCTGGTTAATACTCTCTACCTGTCGCTCAGGTACCAGTCAGTCAGCCCCCACCGTCCACCCAGtctctatatgttttgatttgtattGCCCCACCCTCCACTTCTCACCTGCAGCACACCTCCTCTTCActgtcatctcctcttctctgttaCCTGGCATGGAGCTCAGTGTCAAGACCGAGCAGGGTTCTGTGAGgATGATGTGAGGGGACCATGATGAGGACAGGCCATGGTGAGGACTCAGGACCCAGCGCTGGGGAGGGCACCTGGAACATTGATGGATACTGGATATAGaGGTCAGATGGTGTTCTGAACGAGACATGGGTAGCTACTGTAGCTGTCCTGACAAAGACTTCCCTGATAAGCATCAGAGCAAATTCAAGgTGATAAATGTGGATGACGATGGTAATGAGTTGGGCTCAGGCTTGATGGAGCTGACAGAGGAGGAGCTTATCCTCCACACCAGGAAACGTGACACCGTCAAGTGGCCTTACCTCTGTCTGCGTCGCTACGGTTACGACTCCAACCTCTTCTCCTTCGAGAGCGGGCGACGATGCCAGACTGGACAGGGTATCTTTGCCTTCAAGTGTGTGAGGGCAGAGGAGATGTTCAACGTGCTGCAGGACATCATGCACAACAACAGCATCAGTGTAGTGGAGGAGCAGGTGGTGGAGCTCAACCCTATAGAGACTACTGAGATGTCCCGCAAACCACACACTGCTGCTtctgGCTACTCTGTACCCACGTTACCGAACGGTATAGGGCGCTACCCGTCGTTTGGTGAGGCCTCGTCGCGCCCTTCTAGCCGACACCCGTCTGTAGGCAGCGCCAGGCTGCCCTCAGTGGGAGAGGAGTCATCACACCCCCTCCTGGTCTCAGACCAGTCGgtccacACCTACGTAAACACTCCTGGGATACAGGATGACCGGCGCACTCGCCCCAGCAGCCACACCCCCTTGGAACTGCGGCTGTCCAATCCGGAGACGACCTCCTTGCTAGCCACCGCCCCTCCGTCTCCCACGGAGACAGACATGGATACGGAGCCTCAGGTGCTGCTGGAGCCAGAAGGGGCTAAATTCATCCTGGGTCCCACCCCGGCTCAGAGGAGGCAGAAGCAGACCCCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACATTCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACGTTCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACGTTCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACGTTCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACGTtctggggatggagagatggagctTGGGGTGTCTGGGTCTAACGATGAGCCCAGCTTGACAGCTCCCTCTGGGGGTCTGAACGGGAATGGGAACGGCTGTGTGGTGGGCGCCACCCTGGGTCTCCAGGCAGGAGATTGTGATACGGGCTATGACAGTGATGAACGCAAAGACgggccccctccccctcttcctcctaacccaaaccctccacctctcccagggCCCAAACCCAGCACCATCTCCACCTATGAGCACCACAACGGCAACACCACCCATCCTTATGTCTCCACCCCTGTTCCAGCCCCCAACCCCCGGCGTAACCGCCCCGCCATCCCCCTCCCTGACTCCTCCCACAATGCCAACAACTCCGCCCAGCGGCGCACGGCGCTCCTTAACTACGAGAACCTCCCGGCGCTGCCACCGGTGTGGGAGACCGCCAGGCGCTTCTCCGAGGGAGACGAGGAGGACGAAGAGGAGGTGTATCACGGATATGGACCAAAGACGCCCTCCCTTAACggctaccacaaccaccaccaccatcctcaccaccatcaccatcaccttcATCACCACGGTCTGGGTCTGGACCCCATGCACAACTACGTCAACACAGAGAATGTAAACGTCTCGCTCAGCGCCAAACTGGACTCTGCGCGGATCCTTCCGCGGGGGCGGGACTCTAGCGGCGTCTGTTTGACCCCCAGCGTCTTTACCTTTGACTTCCGGTCGGGGCGAGTGGCGGGCGGACCGTGTGGGTTGGGGTTGGATCCCCTGAGGCAGCTGAACTACATTGAGTTGGAGATGGAGAAGGGTTCGGACTCCAGCGGGCCGCAGACACCCAAGACCCCCACCACTCCCTGTGGCGTCGGCCTGGGCAgtctcctcctcccaccctccacccccaCGCGGCGGACCGAACTGTACGCCATGATCGACATCGAGCGCACGGCGGCCATGTCGAGTCTTCAGAAAGCACTGCCCCGTGACGACGGTACCTCTAGGAAAACCAGACACAACAGTACTGACCTTCCTATGTGAACTTCACCACGCCCTACCATACCTAGCCTACCAAGCACTgatctcaaatggaaccctattccctatatagtgcactactttagacttgGACTATTCATAAAGTGCCTGAgagtatgagtgctgatctaagatcagtttgaCCTTTTTAGACAATAAGGAATCCGATGAC
>XM_036956563.1
TGTCTGGGTCCTTTGTCAATTTGGTGCCGTTCTGGAAATCCCAGGATCTGACTGACTATTCCCTGTCTACTAGAAGTTAGTTACTGCTTATAAGCAGGAAGAGAATAGTAAGGCTTTCAAAGAAGATAGAATACGTTTTTGCTTTTGAAATAAACTTTGAAAAGTATTTGACTGCGACTCGACCCGGATGCAGTCTGGGGATACATACTGGCGTGTTCGGGACGAGATCGAGGCACTGCACTGCCTGAGCTCCGGGAGGGGAGCTGCCTGCTGGAGAGAGTTGCTGGGCGAGTGAGCGATTTACTACAACAAGACAGCGCGACAGCGAGAACAACTTCAGCACGCCTAACTAGTTACTAGGTATTTTCAAAACGAACAGAAAACAAGGTCGGAAGGCAGCGCGGGAGCTATTTATAACATTGCTGCTGATAAAGTGCCACATTGGTCACGTTCGTAAAGTAATATTTTTGCGGGGCGACAGATCGGAGGAGGGACGGGAGTGTGTGAAGCACTTTGATGTGGGCTGCTGATGGTTGTAGCAGTGAGGAGAAGGGATTTAACAACTTTCCTAAACACATCAACAAGGGATTCGTGGCAATATTTCCCGAAATACATCTCCGGTTTACCCACGAAGCTTTCCCCCTgATGATGTGAGGGGACCATGATGAGGACAGGCCATGGTGAGGACTCAGGACCCAGCGCTGGGGAGGGCACCTGGAACATTGATGGATACTGGATATAGaGGTCAGATGGTGTTCTGAACGAGACATGGGTAGCTACTGTAGCTGTCCTGACAAAGACTTCCCTGATAAGCATCAGAGCAAATTCAAGgTGATAAATGTGGATGACGATGGTAATGAGTTGGGCTCAGGCTTGATGGAGCTGACAGAGGAGGAGCTTATCCTCCACACCAGGAAACGTGACACCGTCAAGTGGCCTTACCTCTGTCTGCGTCGCTACGGTTACGACTCCAACCTCTTCTCCTTCGAGAGCGGGCGACGATGCCAGACTGGACAGGGTATCTTTGCCTTCAAGTGTGTGAGGGCAGAGGAGATGTTCAACGTGCTGCAGGACATCATGCACAACAACAGCATCAGTGTAGTGGAGGAGCAGGTGGTGGAGCTCAACCCTATAGAGACTACTGAGATGTCCCGCAAACCACACACTGCTGCTtctgGCTACTCTGTACCCACGTTACCGAACGGTATAGGGCGCTACCCGTCGTTTGGTGAGGCCTCGTCGCGCCCTTCTAGCCGACACCCGTCTGTAGGCAGCGCCAGGCTGCCCTCAGTGGGAGAGGAGTCATCACACCCCCTCCTGGTCTCAGACCAGTCGgtccacACCTACGTAAACACTCCTGGGATACAGGATGACCGGCGCACTCGCCCCAGCAGCCACACCCCCTTGGAACTGCGGCTGTCCAATCCGGAGACGACCTCCTTGCTAGCCACCGCCCCTCCGTCTCCCACGGAGACAGACATGGATACGGAGCCTCAGGTGCTGCTGGAGCCAGAAGGGGCTAAATTCATCCTGGGTCCCACCCCGGCTCAGAGGAGGCAGAAGCAGACCCCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACATTCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACGTTCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACGTTCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACGTTCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACGTtctggggatggagagatggagctTGGGGTGTCTGGGTCTAACGATGAGCCCAGCTTGACAGCTCCCTCTGGGGGTCTGAACGGGAATGGGAACGGCTGTGTGGTGGGCGCCACCCTGGGTCTCCAGGCAGGAGATTGTGATACGGGCTATGACAGTGATGAACGCAAAGACgggccccctccccctcttcctcctaacccaaaccctccacctctcccagggCCCAAACCCAGCACCATCTCCACCTATGAGCACCACAACGGCAACACCACCCATCCTTATGTCTCCACCCCTGTTCCAGCCCCCAACCCCCGGCGTAACCGCCCCGCCATCCCCCTCCCTGACTCCTCCCACAATGCCAACAACTCCGCCCAGCGGCGCACGGCGCTCCTTAACTACGAGAACCTCCCGGCGCTGCCACCGGTGTGGGAGACCGCCAGGCGCTTCTCCGAGGGAGACGAGGAGGACGAAGAGGAGGTGTATCACGGATATGGACCAAAGACGCCCTCCCTTAACggctaccacaaccaccaccaccatcctcaccaccatcaccatcaccttcATCACCACGGTCTGGGTCTGGACCCCATGCACAACTACGTCAACACAGAGAATGTAAACGTCTCGCTCAGCGCCAAACTGGACTCTGCGCGGATCCTTCCGCGGGGGCGGGACTCTAGCGGCGTCTGTTTGACCCCCAGCGTCTTTACCTTTGACTTCCGGTCGGGGCGAGTGGCGGGCGGACCGTGTGGGTTGGGGTTGGATCCCCTGAGGCAGCTGAACTACATTGAGTTGGAGATGGAGAAGGGTTCGGACTCCAGCGGGCCGCAGACACCCAAGACCCCCACCACTCCCTGTGGCGTCGGCCTGGGCAgtctcctcctcccaccctccacccccaCGCGGCGGACCGAACTGTACGCCATGATCGACATCGAGCGCACGGCGGCCATGTCGAGTCTTCAGAAAGCACTGCCCCGTGACGACGGTACCTCTAGGAAAACCAGACACAACAGTACTGACCTTCCTATGTGAACTTCACCACGCCCTACCATACCTAGCCTACCAAGCACTgatctcaaatggaaccctattccctatatagtgcactactttagacttgGACTATTCATAAAGTGCCTGAgagtatgagtgctgatctaagatcagtttgaCCTTTTTAGACAATAAGGAATCCGATGAC
>TU1946284
GTGAGGAGAAGGGATTTAACAACTTTCCTAAACACATCAACAAGGGATTCGTGGCAATATTTCCCGAAATACATCTCCGGTTTACCCACGAAGCTTTCCCCCTgATGATGTGAGGGGACCATGATGAGGACAGGCCATGGTGAGGACTCAGGACCCAGCGCTGGGGAGGGCACCTGGAACATTGATGGATACTGGATATAGaGGTCAGATGGTGTTCTGAACGAGACATGGGTAGCTACTGTAGCTGTCCTGACAAAGACTTCCCTGATAAGCATCAGAGCAAATTCAAGgTGATAAATGTGGATGACGATGGTAATGAGTTGGGCTCAGGCTTGATGGAGCTGACAGAGGAGGAGCTTATCCTCCACACCAGGAAACGTGACACCGTCAAGTGGCCTTACCTCTGTCTGCGTCGCTACGGTTACGACTCCAACCTCTTCTCCTTCGAGAGCGGGCGACGATGCCAGACTGGACAGGGTATCTTTGCCTTCAAGTGTGTGAGGGCAGAGGAGATGTTCAACGTGCTGCAGGACATCATGCACAACAACAGCATCAGTGTAGTGGAGGAGCAGGTGGTGGAGCTCAACCCTATAGAGACTACTGAGATGTCCCGCAA

Function

symbol description
frs2 Enables fibroblast growth factor receptor binding activity and neurotrophin TRKA receptor binding activity. Involved in negative regulation of cardiac muscle cell differentiation. Acts upstream of or within fibroblast growth factor receptor signaling pathway. Located in adherens junction. Biomarker of renal cell carcinoma.

NR:

description
PREDICTED: fibroblast growth factor receptor substrate 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956564.1 False 2551 mRNA 0.58 7 1363229 1380149
XM_036956563.1 False 2956 mRNA 0.56 7 1363229 1446417
TU1946284 True 616 TUCP 0.51 5 1369149 1445876

Neighbor

gene id symbol gene type direction distance location
LOC110527029 LOC106592131 coding downstream 6198 1348599 ~ 1357031 (-)
LOC110511372 LOC106592130 coding downstream 14732 1319221 ~ 1348497 (-)
LOC110516566 LOC106576623 coding downstream 511463 824590 ~ 851766 (-)
cacna2d4a cacna2d4 coding downstream 577855 585735 ~ 785374 (-)
LOC118942823 NA coding downstream 780212 581374 ~ 597675 (-)
LOC110499705 LOC106609801 coding upstream 2387 1448804 ~ 1453886 (-)
LOC110499704 cpsf6 coding upstream 8149 1454566 ~ 1513068 (-)
LOC110511332 LOC106576651 coding upstream 54014 1500431 ~ 1516184 (-)
ptprbl LOC106609809 coding upstream 417557 1863974 ~ 1985304 (-)
LOC118942826 NA coding upstream 539493 1985910 ~ 1990032 (-)
G1700726 NA non-coding downstream 3560 1357564 ~ 1359669 (-)
G1700712 NA non-coding downstream 47279 1312956 ~ 1315950 (-)
G1700697 NA non-coding downstream 80160 1281085 ~ 1283069 (-)
G1700658 NA non-coding downstream 157564 1205145 ~ 1205665 (-)
G1700621 NA non-coding downstream 225558 1124574 ~ 1137671 (-)
G1700702 NA non-coding upstream 39624 1486041 ~ 1487164 (-)
G1700760 NA non-coding upstream 45036 1491453 ~ 1492356 (-)
G1700766 NA non-coding upstream 58088 1504505 ~ 1504791 (-)
G1700778 NA non-coding upstream 91374 1537791 ~ 1538979 (-)
G1700312 NA other downstream 1008720 352487 ~ 354509 (-)
LOC110512520 LOC106609724 other upstream 676112 2113042 ~ 2128710 (-)
G1701041 NA other upstream 742016 2188433 ~ 2189666 (-)
G1701824 NA other upstream 1126257 2572603 ~ 2577051 (-)
G1701930 NA other upstream 1337525 2783942 ~ 2829582 (-)
G1702117 NA other upstream 1782585 3229002 ~ 3230041 (-)

Expression


Co-expression Network