LOC110511332 (LOC106576651)


Basic Information

Item Value
gene id LOC110511332
gene name LOC106576651
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1500431 ~ 1516184 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956575.1
ATAGCCAGGAGCGCACTGGCAgctggactgacagacagacacagacagacaaccagcTAAATGTGGCCAGGGCGGTCACCTGATGATTGCTCAATCTTGACTCACGGTTCAGGAATACACTATATTACACCTAAAGCAACAACAAGCCATGTGATTTTAGATTTGGTACAAAAGTGATTGAAGGAAGATGACGGTGACCTACTCCAGTAAAGTCGCCAACGCCACGTTCTTCGGTTTCCATAGACTTCTACTGCGATGGAGAGGCAGCATCTACAAACTGCTTTATCGGGAGTTTATAGTCTTTGTACTGTTATATACCTTGGTGAGCCTCGTTTACAGACTCGCCCTCTCAGACCCTGAAAAGCGTTTCTTTGAAAAGTTGGCTCTTCACTGTAACAAGTATGCAGAACAGATTCCAGTCACGTTTGTGCTCGgtTTCTACGTAACCCTGGTGGTCAACCGTTGGTGGAACCAGTTCGTGAATCTGCCTTGGCCCGACCGCCTCATGTTCCTGGTCTCCAGCTGTGTTCACGGCCACGACGAGCAGGGCCGCCTCCTCAGACGCACGCTGATGCGCTACGTCAATCTCACCTCACTGCTCATCTTCCGCTCCGTCAGCACCGCCGTCTGTAAGAGGTTCCCCACCATGGAGCATGTGGTGGAGGCAGgCTTCATGACTCCAGAAGAGAGGAAGATCTTTGATGCTGTCAAGTCTCCCCACCTGAAGTACTGGATCCCTGTGGTGTGGTTTTCTAACATGGCGTCCAGGGCTCGGACGGAGGGGCGCATCAAGGACAGCGTGGACCTGCAGACCATCCTCAACGAGATGAACACATTCAGGACTTGGTGCTCTACTCTATTTGGTTATGACTGGGTTGGGATTCCTCTCGTCTACACACAGgtaGTAACCCTGGCCGTCTACACCTTCATCTTTGCCTGTATTATTGGTAGACAGTTCCTGGACCCAGCTCAGGGTTACCCAGGTCATGACCAGGACTTTTACGTTCCCATCTTCACTATGCTACAGTTCTTCTTCTACTCTGGCTGGCTCAagGTTGCTGAGCAGCTCATTAATCCATTTGGGGAGGATGATGACGACTTCGAGGCTAACTGGTGTATCGACAGAAATCTGCAGGTGTCGTTGATTGCGGTGGATGAGATGCACATGAACTTTCCTCCGATGACTAAAGACATTTACTGGAACGACTCTGAGGCTCTGCCTCCCTACACCCTGGCTGCAGCCGACTACTGCATACCCTCCTTCCTCGGATCCACcagagagttggaTCTATCGGGCATTTTTCAGTTCGGAGAGGCAGACAAAATGGACATTCACAGACAGGACAGCCACAACAGCAATCACAACTTCCGTCATGGTCGTCAAACGTCAGTCCTGGGGCACGTGCGTAGACTTCTCAGTGTCCAGGATCCCCCAGAGCTCGTCCCTCCTCGGCCCTCCTTCAAACGTCACAGCAGTGAGGCCTTCTTCCCCTTCAGATCTGACTCCCATGACTACCCTGGATCAGACGACCAGGCCTCCCCAGGACCTGATCACTCTCTGTTCCCCAGACCCAACCTCTTTAACTCCCATAACCCCCTCTCGACCAACCACCCTCTGGATACGCTACGGGAGGTTAGTAGTACTCTTTCTTCCCTGGACACTGAGCCCCGTACACCGTCCTTCACAGACCTGCCTCAGTGGGTGGTAAGTCCACCTGCTTCTTCTGATGATCATGGGGATAGTGGTTATGGGGGTGATGGAGGGACGTGTGGGGCGTTATCTGGGGCTCCACAACCCCTGAATCATATAGAGGCCTTCTCCCAACAGACAGGGCATGAGCAGGCCTCAAGTAAGCCTGGGACTCCAGTAGATCTGTCCCCCATTGTGGAGGCTCCGGCCCTGAACACGAATCAGGGCAACAGCTGTACCCAACCGAGGCCCAAGAAGTTGAGCTGGAACGTCCCCAAAGACTGGTGTAAGCCACAGAGACGTCAGCTGTCCTTCCAGTTCTCCAGACAGGGCTCAAAGAGCTCCCTGCACAGCCTGCCTAGTCCTCAAGGcctagggaggaggagaggccgAAACACTTCCACAGCCCTCCACTTTCCTGCTGAGCCTGCCCAGTTCCAAGCACTGCAAGTCCCCGAGACAGACATTCTGGAGTCCAATGGTCATGAGAGTGACAAGAAGGACACCAATGACAGCCAAGAGAACAAGGACATGTCACAATCGGAGAAGTCGTAATGTTCTTCTGACATACAGTCCATATCGACCTGCTGTGCGAGTCACTTAACAGGCTCTCTAAGGGTGTACCCAGCATTATTATAATTGACACCCTAATAAACATCAAATGTTTGTTTTATAATAAAATATAATGTATTCAGTCA

Function

NR:

description
PREDICTED: bestrophin-3-like

GO: NA

KEGG:

id description
K13880 BEST3, VMD2L3; bestrophin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956575.1 True 2388 mRNA 0.52 10 1500431 1516184

Neighbor

gene id symbol gene type direction distance location
LOC110499704 cpsf6 coding downstream 23914 1454566 ~ 1513068 (-)
LOC110499705 LOC106609801 coding downstream 46545 1448804 ~ 1453886 (-)
LOC118942825 frs2 coding downstream 54014 1363229 ~ 1446417 (-)
LOC110527029 LOC106592131 coding downstream 143400 1348599 ~ 1357031 (-)
LOC110511372 LOC106592130 coding downstream 151934 1319221 ~ 1348497 (-)
ptprbl LOC106609809 coding upstream 347790 1863974 ~ 1985304 (-)
LOC118942826 NA coding upstream 469726 1985910 ~ 1990032 (-)
LOC110499711 ptprr coding upstream 475293 1991477 ~ 2085804 (-)
LOC110512520 LOC106609724 coding upstream 596858 2113042 ~ 2128710 (-)
LOC110499714 LOC106609803 coding upstream 612849 2129033 ~ 2138088 (-)
G1700710 NA non-coding downstream 23 1442197 ~ 1500408 (-)
G1700760 NA non-coding downstream 8075 1491453 ~ 1492356 (-)
G1700702 NA non-coding downstream 13267 1486041 ~ 1487164 (-)
G1700701 LOC106593264 non-coding downstream 15171 1416668 ~ 1485260 (-)
G1700726 NA non-coding downstream 140762 1357564 ~ 1359669 (-)
G1700778 NA non-coding upstream 21607 1537791 ~ 1538979 (-)
G1700800 NA non-coding upstream 77036 1593220 ~ 1593454 (-)
G1700802 NA non-coding upstream 81238 1597422 ~ 1647912 (-)
G1700818 NA non-coding upstream 120247 1636431 ~ 1637059 (-)
G1700820 NA non-coding upstream 121907 1638091 ~ 1733616 (-)
G1700312 NA other downstream 1145922 352487 ~ 354509 (-)
G1701041 NA other upstream 672249 2188433 ~ 2189666 (-)
G1701824 NA other upstream 1056490 2572603 ~ 2577051 (-)
G1701930 NA other upstream 1267758 2783942 ~ 2829582 (-)
G1702117 NA other upstream 1712818 3229002 ~ 3230041 (-)

Expression


Co-expression Network