LOC110499714 (LOC106609803)


Basic Information

Item Value
gene id LOC110499714
gene name LOC106609803
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2129033 ~ 2138088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956599.1
CTTTCTGCCAACTAACGTAGTAGTTAAAGAAACAACCTTCCAAACTTGGTCATTTTCCACCCTCCAACAGAAACAAGTTGAAGGATCCCCTTTAAACACAGTAAATCACCCCCAGGGTCTCGTGTTCAGTCCGTTATCCGTCCAGTTATAGTTTGAAGCAACTGTTTTGGGATCGAGGACGTGTTTATCGCACTATGGGGAATGGCAGAACGTACACGAGAGGACTGTGTATCACTTTCAATGTCCTGCTTCTGGTATCTGGGGTATTTCTGTTCGTAGTTGGGGTTTCATACAGCTTCCAACACCCTCCTGAGtatgttgtcttcatGACCTGTGAATTCATAGCCATCGTCATCATCGCTGTGCCGATGCTTCGTGCCCAACCAAAGAtggaggagattctggacagAAGGTTTCACTCTGTGACTCCTCTTCACGATACTGAACCGCAGGTCCAGAGGGAGCTGAACAAACTCCAGGCATCAGATCAATGCTGTGGACTGCGTGGCCACTCAGACTGGGGTTGTCACATTCcactctcctgctactgtcctccactccctccagacAACTCATTGGACATTCTATGTGAGACTGTAAATCTAGGCCTACAGAACACTATGCTAAACTGTCAGCACAATAACACACACGGACAAACTACAACTTCAGTGTCCCAGGAGCGCTGGGTGTACAGCAAGCCTTGTGGTCCCATCCTGAAGAGACACATGAACTTCCTGATTCAGATCATGATCGGATTCATCTCTACATTTGCCACCATTATGATTGCTGCCATAGTGATGTCTCTGGTAGTGCTGGCCCTCCAGATACGGTCCACAGAGCCACCGCTCAACGACAGCCTCGACAGAGTCAAGTACCAACTCAGTCCTCTAGCTGTCACCTGACCTCAGCGTCAACACCACAGATAACCATGCTCTGCACGAGGACGAGAACTTGATTCATGTATACCAAACTGTTATCCTCCTGCTGGTATTTTGTTTggaacactacagtgaaaatcaACACACGGCTAAATTCCAGTGCCTGAACTCAAATGAAAAACAAACACACGGCTAAATTCCAGTGGCTGAAACGTTCCTGTGCCTGaactcaaaaaaaaaaacacatggtgTGGCTCTCATCCCACCTCTTCTCTGCTGTACAGTTTGGTTTATCCTGTACATGATAAATGCCAATTGTTCCCCTCAGATCTAACTATTGTACCTTGTTTTTAaagtgcattaaaaaaaaaatctgaaactgCATGTTAATAATGAGTGTATATAAGTGTGGTATGACAATGGTGAATGAACAAGCCATTATGAATATCTGTTCAACATGCTGAAAGGTTTGTCATCCTCACAACAACAAGCATCATGTCAGTAAACAACCAGCTCAGAGTTAATAAAATGATATGATATAAATCA
>XM_036956598.1
GGCTTTCTGCCAACTAACGTAGTAGTTAAAGAAACAACCTTCCAAACTTGGTCATTTTCCACCCTCCAACAGAAACAAGTTGAAGGATCCCCTTTAAACACAGTAAATCACCCCCAGGGTCTCGTGTTCAGTCCGTTATCCGTCCAGTTATAGTTTGAAGCAACTGTTTTGGGATCGAGGACGTGTTTATCGCACTATGGGGAATGGCAGAACGTACACGAGAGGACTGTGTATCACTTTCAATGTCCTGCTTCTGGTATCTGGGGTATTTCTGTTCGTAGTTGGGGTTTCATACAGCTTCCAACACCCTCCTGAGTTTGACCATCGCAGTACCCTCCATGAGATGTACGTACTAAATGTGATTGGACCCATGACGGTGCTGTTCTCCATCCTGGGAGGCTACGCTGCCTACAGAGACAAGAGAATACAGCTGATCCTGtatgttgtcttcatGACCTGTGAATTCATAGCCATCGTCATCATCGCTGTGCCGATGCTTCGTGCCCAACCAAAGAtggaggagattctggacagAAGGTTTCACTCTGTGACTCCTCTTCACGATACTGAACCGCAGGTCCAGAGGGAGCTGAACAAACTCCAGGCATCAGATCAATGCTGTGGACTGCGTGGCCACTCAGACTGGGGTTGTCACATTCcactctcctgctactgtcctccactccctccagacAACTCATTGGACATTCTATGTGAGACTGTAAATCTAGGCCTACAGAACACTATGCTAAACTGTCAGCACAATAACACACACGGACAAACTACAACTTCAGTGTCCCAGGAGCGCTGGGTGTACAGCAAGCCTTGTGGTCCCATCCTGAAGAGACACATGAACTTCCTGATTCAGATCATGATCGGATTCATCTCTACATTTGCCACCATTATGATTGCTGCCATAGTGATGTCTCTGGTAGTGCTGGCCCTCCAGATACGGTCCACAGAGCCACCGCTCAACGACAGCCTCGACAGAGTCAAGTACCAACTCAGTCCTCTAGCTGTCACCTGACCTCAGCGTCAACACCACAGATAACCATGCTCTGCACGAGGACGAGAACTTGATTCATGTATACCAAACTGTTATCCTCCTGCTGGTATTTTGTTTggaacactacagtgaaaatcaACACACGGCTAAATTCCAGTGCCTGAACTCAAATGAAAAACAAACACACGGCTAAATTCCAGTGGCTGAAACGTTCCTGTGCCTGaactcaaaaaaaaaaacacatggtgTGGCTCTCATCCCACCTCTTCTCTGCTGTACAGTTTGGTTTATCCTGTACATGATAAATGCCAATTGTTCCCCTCAGATCTAACTATTGTACCTTGTTTTTAaagtgcattaaaaaaaaaatctgaaactgCATGTTAATAATGAGTGTATATAAGTGTGGTATGACAATGGTGAATGAACAAGCCATTATGAATATCTGTTCAACATGCTGAAAGGTTTGTCATCCTCACAACAACAAGCATCATGTCAGTAAACAACCAGCTCAGAGTTAATAAAATGATATGATATAAATCA

Function

NR:

description
23 kDa integral membrane protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956599.1 False 1424 mRNA 0.45 8 2129033 2138086
XM_036956598.1 True 1549 mRNA 0.45 9 2129033 2138088

Neighbor

gene id symbol gene type direction distance location
LOC110512520 LOC106609724 coding downstream 323 2113042 ~ 2128710 (-)
LOC110499711 ptprr coding downstream 43229 1991477 ~ 2085804 (-)
LOC118942826 NA coding downstream 139001 1985910 ~ 1990032 (-)
ptprbl LOC106609809 coding downstream 143729 1863974 ~ 1985304 (-)
LOC110511332 LOC106576651 coding downstream 612849 1500431 ~ 1516184 (-)
LOC118942827 NA coding upstream 5907 2143995 ~ 2149711 (-)
LOC118942828 LOC106594636 coding upstream 12895 2150983 ~ 2158956 (-)
LOC110499718 LOC106594636 coding upstream 52051 2190139 ~ 2223200 (-)
LOC118942830 NA coding upstream 891261 3029349 ~ 3030468 (-)
LOC110499739 grip1 coding upstream 1450442 3585864 ~ 4306764 (-)
G1701014 NA non-coding downstream 11509 2117178 ~ 2117524 (-)
G1700978 NA non-coding downstream 26360 2101580 ~ 2102673 (-)
G1700990 NA non-coding downstream 61721 2066920 ~ 2067312 (-)
G1700985 NA non-coding downstream 70355 2057801 ~ 2058678 (-)
G1700977 NA non-coding downstream 75883 2052324 ~ 2053150 (-)
G1701038 NA non-coding upstream 36235 2174323 ~ 2186258 (-)
G1701040 NA non-coding upstream 38769 2176857 ~ 2178915 (-)
G1701045 NA non-coding upstream 72916 2211004 ~ 2212043 (-)
G1701046 NA non-coding upstream 77610 2215698 ~ 2216205 (-)
G1701065 NA non-coding upstream 129412 2267500 ~ 2267900 (-)
LOC118942825 frs2 other downstream 683157 1363229 ~ 1446417 (-)
LOC110511372 LOC106592130 other downstream 805670 1319221 ~ 1348497 (-)
G1700312 NA other downstream 1774524 352487 ~ 354509 (-)
G1701041 NA other upstream 50345 2188433 ~ 2189666 (-)
G1701824 NA other upstream 434586 2572603 ~ 2577051 (-)
G1701930 NA other upstream 645854 2783942 ~ 2829582 (-)
G1702117 NA other upstream 1090914 3229002 ~ 3230041 (-)
G1702141 NA other upstream 1143014 3281102 ~ 3518377 (-)

Expression


Co-expression Network