LOC118942827


Basic Information

Item Value
gene id LOC118942827
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2143995 ~ 2149711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956602.1
AAATGACATAAAACCCAGAGTTCTTCCTTCAATGCACATTCTCTCAGAGACCGAGTCAGAGGTGAGACCAGAGCTGCAACATGTGTTGTTCCTGCTCTATTAGAGGCTGGCTGATTTTCTTCACAATCCTACAAGTGATTGGTGGCATGAGTTTCATTGTCACCCCTTGGAAGTATTACAGGAGCAGAGAAAATGACCTAGATGAACGCCTGTCTCCTGTCAGATGGACTATCTTCACAGCAGGTGTGGTCTCCTTTCTCCTTGGCATCACGGGTCTGCATGGAGCTCGTAAGAAGAACAAGAACTTCCTGATCACGCATGGCTTTGTTTACAAACAACCTTGTATGGATCTAATTGTGAAGATTTACATGGACATGAATATTGTGAGGAACACCTGTATTTTCTACGTGGTCGTTACGGCCATTGTAATGCTTCTGGCGTTGGTAATGACCCGTAGAATCCAAAAAGCCTCCTCGGCTGAGGTGACCATGGATCTTAGCTATAGAAACGCACCCAACATGGAAATGGCAACTACTCCTCAAGCTCCTCCCATGCTGCCTGCCACACAAGCTCATCCCATGCTGTCTTCAACACAAGCTCCTCTTCATGCCAGCTCTTATTACCAGCCACCTCCTCCGTACCAGTACGATGGGAAACACTAGAGGGACGTGACTGACCTGCGAACCCATATTGAATTTCCTCATTGGTTACAACTGGACCAGGGTTGGGTTTAAGgctagggttaaagttagggttggggttaaggttagggttgaggttgggGTCAGTTTTAGCGTTTGCCTTCATTGGACTGCCAATGTGTTGCACCCCAATATGTCTTAGTAAAGGCTGAGCACACAGATGCTCAGTTCACACAGATGCTCTTTCAGTGATGTGTATGAAGGGTTaatgttttcatgttttcatgtttcTTGTTTTCATGTTTCTTGTGGAGGTTGTCAGGGCTGCTTTGTTATTGCCCATCATCCTGTTCAACAGTGTTGTGCCTCACATGCAGGTATACGCAGTACGTGCAGATCAGTGCTGTAAAAAAGACCAAACCACAGTACTTTGTTTCAGAGGAATGGAAAGCAATGCTTGTCGTGAGAAAATAAACCACAAGAGTGTAGATGGGACAAACAAGGGTCTTCCAACTATTCAAAAAGTCCCTTTGGTTTTACTCTGTTTAAATGTAGAACAATACAACCAAACTGCACCTTCACAGAAGTGATTACTGTGGTCAAACTAAGATGTAGAACTGCATCCtaaattgtaccctattccctacatagtgccctatgggccctggacaaaagtagtacactacatagggaacagggtgccattttggacatagTCGACGTCTTTGCGTGACCTCGATGAGCATTTTCATGTTTTCCACTGAAGAAGGAAGTGACTGGCATGTTGTTTTACccccaaaaataaataataaatcaatcaaatgttaaaGGAGGGACGACTCATTAAGAAATCAGGGCTGATATTTATAAATCTTCTCAGAGACGGAAGGTTGATCTTGGATCTGTTTTTTTCTCCTTCTTATAAATAAGATAACATGTGTTGTTGGTGTTACATGGACAATGGGGGGGGAccttgatcctagatcagtacttcTACTTCTCAAaggctttatgaatatgggcctGGTTCCCTTTACATTGGGTTGATTCCTCTGTACAAAAGGTGCTATGTTGAACCTAAAAAGGTCACTTCGTCTCCCATAcgagaaccttttgaagaactatttttggttccaggtagaacctattttgttccaggtagaagaacccttttgagttccgtGTAGAACTCTTTCCACAAAAGGGAACcagaaaagggttctacctggaaccaaaaagggttctacctggaaccaaaaagggttctcctatggggacagctgaataaccatTCTGGAAGCCATATTTCTCTGTATTGTAAGTATGGAATCCACCTGGGCTTCATAGGTCTTCCTCGGTACCATTACTGAACTATTGAAACACGTAATGAACTAGGAACattcctgggtcatgttcattaggcactaaaTTAGGTCAGGTTTAATTAAGAcgagggttaagtttagggttggggtcagtttgGGTGTTTGCCTTCATTGGACTGCCAATGTGTTGCACCCCAATATGCCTTAGTAACGGCTGAGCACTTCTGTTAATGTGAGACAATTTGTTTGTGGGTTCTGGAAGTAACGTGCCCGAGGGAAGGGGCCCATTTCATTGTCAAACAATCACCCACGTGAATCACCCGTTTTCCTGTCTGGTAACTCCTCTAACA
>XM_036956600.1
ACTGTCAAGACACTTGTCGGTTACAGGAAATGACATAAAACCCAGAGTTCTTCCTTCAATGCACATTCTCTCAGAGACCGAGTCAGAGGTGAGACCAGAGCTGCAACATGTGTTGTTCCTGCTCTATTAGAGGCTGGCTGATTTTCTTCACAATCCTACAAGTGATTGGTGGCATGAGTTTCATTGTCACCCCTTGGAAGTATTACAGGAGCAGAGAAAATGACCTAGATGAACGCCTGTCTCCTGTCAGATGGACTATCTTCACAGCAGGTGTGGTCTCCTTTCTCCTTGGCATCACGGGTCTGCATGGAGCTCGTAAGAAGAACAAGAACTTCCTGATCACGTATTCAGTTGGATCTTGTCTGCGATGCTTTGGACTGGTGTTTCTGACCTACTACCTTCCACCACAGcttccAAATATGATCAAAGCCTGGTATGAAGGGTACATCCCGTTGCACACAAATGGAAGAGATGTGGTACCAGGACTGACGGAACTGCAAACCACTGGTGAATGCTGTGGATTGTTCCATGGGTATAAAGATTGGggttctcctgtcccctcctcgtGTACATGCTATCCTCTCCGACAAGGGTCCTGTGTTTTTACTGAGCATGGCTTTGTTTACAAACAACCTTGTATGGATCTAATTGTGAAGATTTACATGGACATGAATATTGTGAGGAACACCTGTATTTTCTACGTGGTCGTTACGGCCATTGTAATGCTTCTGGCGTTGGTAATGACCCGTAGAATCCAAAAAGCCTCCTCGGCTGAGGTGACCATGGATCTTAGCTATAGAAACGCACCCAACATGGAAATGGCAACTACTCCTCAAGCTCCTCCCATGCTGCCTGCCACACAAGCTCATCCCATGCTGTCTTCAACACAAGCTCCTCTTCATGCCAGCTCTTATTACCAGCCACCTCCTCCGTACCAGTACGATGGGAAACACTAGAGGGACGTGACTGACCTGCGAACCCATATTGAATTTCCTCATTGGTTACAACTGGACCAGGGTTGGGTTTAAGgctagggttaaagttagggttggggttaaggttagggttgaggttgggGTCAGTTTTAGCGTTTGCCTTCATTGGACTGCCAATGTGTTGCACCCCAATATGTCTTAGTAAAGGCTGAGCACACAGATGCTCAGTTCACACAGATGCTCTTTCAGTGATGTGTATGAAGGGTTaatgttttcatgttttcatgtttcTTGTTTTCATGTTTCTTGTGGAGGTTGTCAGGGCTGCTTTGTTATTGCCCATCATCCTGTTCAACAGTGTTGTGCCTCACATGCAGGTATACGCAGTACGTGCAGATCAGTGCTGTAAAAAAGACCAAACCACAGTACTTTGTTTCAGAGGAATGGAAAGCAATGCTTGTCGTGAGAAAATAAACCACAAGAGTGTAGATGGGACAAACAAGGGTCTTCCAACTATTCAAAAAGTCCCTTTGGTTTTACTCTGTTTAAATGTAGAACAATACAACCAAACTGCACCTTCACAGAAGTGATTACTGTGGTCAAACTAAGATGTAGAACTGCATCCtaaattgtaccctattccctacatagtgccctatgggccctggacaaaagtagtacactacatagggaacagggtgccattttggacatagTCGACGTCTTTGCGTGACCTCGATGAGCATTTTCATGTTTTCCACTGAAGAAGGAAGTGACTGGCATGTTGTTTTACccccaaaaataaataataaatcaatcaaatgttaaaGGAGGGACGACTCATTAAGAAATCAGGGCTGATATTTATAAATCTTCTCAGAGACGGAAGGTTGATCTTGGATCTGTTTTTTTCTCCTTCTTATAAATAAGATAACATGTGTTGTTGGTGTTACATGGACAATGGGGGGGGAccttgatcctagatcagtacttcTACTTCTCAAaggctttatgaatatgggcctGGTTCCCTTTACATTGGGTTGATTCCTCTGTACAAAAGGTGCTATGTTGAACCTAAAAAGGTCACTTCGTCTCCCATAcgagaaccttttgaagaactatttttggttccaggtagaacctattttgttccaggtagaagaacccttttgagttccgtGTAGAACTCTTTCCACAAAAGGGAACcagaaaagggttctacctggaaccaaaaagggttctacctggaaccaaaaagggttctcctatggggacagctgaataaccatTCTGGAAGCCATATTTCTCTGTATTGTAAGTATGGAATCCACCTGGGCTTCATAGGTCTTCCTCGGTACCATTACTGAACTATTGAAACACGTAATGAACTAGGAACattcctgggtcatgttcattaggcactaaaTTAGGTCAGGTTTAATTAAGAcgagggttaagtttagggttggggtcagtttgGGTGTTTGCCTTCATTGGACTGCCAATGTGTTGCACCCCAATATGCCTTAGTAACGGCTGAGCACTTCTGTTAATGTGAGACAATTTGTTTGTGGGTTCTGGAAGTAACGTGCCCGAGGGAAGGGGCCCATTTCATTGTCAAACAATCACCCACGTGAATCACCCGTTTTCCTGTCTGGTAACTCCTCTAACA
>XM_036956601.1
ACTGTCAAGACACTTGTCGGTTACAGGAAATGACATAAAACCCAGAGTTCTTCCTTCAATGCACATTCTCTCAGAGACCGAGTCAGAGGTGAGACCAGAGCTGCAACATGTGTTGTTCCTGCTCTATTAGAGGCTGGCTGATTTTCTTCACAATCCTACAAGTGATTGGTGGCATGAGTTTCATTGTCACCCCTTGGAAGTATTACAGGAGCAGAGAAAATGACCTAGATGAACGCCTGTCTCCTGTCAGATGGACTATCTTCACAGCAGGTGTGGTCTCCTTTCTCCTTGGCATCACGGGTCTGCATGGAGCTCGTAAGAAGAACAAGAACTTCCTGATCACGTATTCAGTTGGATCTTGTCTGCGATGCTTTGGACTGGTGTTTCTGACCTACTACCTTCCACCACAGcttccAAATATGATCAAAGCCTGGTATGAAGGGTACATCCCGTTGCACACAAATGGAAGAGATGTGGTACCAGGACTGACGGAACTGCAAACCACTCATGGCTTTGTTTACAAACAACCTTGTATGGATCTAATTGTGAAGATTTACATGGACATGAATATTGTGAGGAACACCTGTATTTTCTACGTGGTCGTTACGGCCATTGTAATGCTTCTGGCGTTGGTAATGACCCGTAGAATCCAAAAAGCCTCCTCGGCTGAGGTGACCATGGATCTTAGCTATAGAAACGCACCCAACATGGAAATGGCAACTACTCCTCAAGCTCCTCCCATGCTGCCTGCCACACAAGCTCATCCCATGCTGTCTTCAACACAAGCTCCTCTTCATGCCAGCTCTTATTACCAGCCACCTCCTCCGTACCAGTACGATGGGAAACACTAGAGGGACGTGACTGACCTGCGAACCCATATTGAATTTCCTCATTGGTTACAACTGGACCAGGGTTGGGTTTAAGgctagggttaaagttagggttggggttaaggttagggttgaggttgggGTCAGTTTTAGCGTTTGCCTTCATTGGACTGCCAATGTGTTGCACCCCAATATGTCTTAGTAAAGGCTGAGCACACAGATGCTCAGTTCACACAGATGCTCTTTCAGTGATGTGTATGAAGGGTTaatgttttcatgttttcatgtttcTTGTTTTCATGTTTCTTGTGGAGGTTGTCAGGGCTGCTTTGTTATTGCCCATCATCCTGTTCAACAGTGTTGTGCCTCACATGCAGGTATACGCAGTACGTGCAGATCAGTGCTGTAAAAAAGACCAAACCACAGTACTTTGTTTCAGAGGAATGGAAAGCAATGCTTGTCGTGAGAAAATAAACCACAAGAGTGTAGATGGGACAAACAAGGGTCTTCCAACTATTCAAAAAGTCCCTTTGGTTTTACTCTGTTTAAATGTAGAACAATACAACCAAACTGCACCTTCACAGAAGTGATTACTGTGGTCAAACTAAGATGTAGAACTGCATCCtaaattgtaccctattccctacatagtgccctatgggccctggacaaaagtagtacactacatagggaacagggtgccattttggacatagTCGACGTCTTTGCGTGACCTCGATGAGCATTTTCATGTTTTCCACTGAAGAAGGAAGTGACTGGCATGTTGTTTTACccccaaaaataaataataaatcaatcaaatgttaaaGGAGGGACGACTCATTAAGAAATCAGGGCTGATATTTATAAATCTTCTCAGAGACGGAAGGTTGATCTTGGATCTGTTTTTTTCTCCTTCTTATAAATAAGATAACATGTGTTGTTGGTGTTACATGGACAATGGGGGGGGAccttgatcctagatcagtacttcTACTTCTCAAaggctttatgaatatgggcctGGTTCCCTTTACATTGGGTTGATTCCTCTGTACAAAAGGTGCTATGTTGAACCTAAAAAGGTCACTTCGTCTCCCATAcgagaaccttttgaagaactatttttggttccaggtagaacctattttgttccaggtagaagaacccttttgagttccgtGTAGAACTCTTTCCACAAAAGGGAACcagaaaagggttctacctggaaccaaaaagggttctacctggaaccaaaaagggttctcctatggggacagctgaataaccatTCTGGAAGCCATATTTCTCTGTATTGTAAGTATGGAATCCACCTGGGCTTCATAGGTCTTCCTCGGTACCATTACTGAACTATTGAAACACGTAATGAACTAGGAACattcctgggtcatgttcattaggcactaaaTTAGGTCAGGTTTAATTAAGAcgagggttaagtttagggttggggtcagtttgGGTGTTTGCCTTCATTGGACTGCCAATGTGTTGCACCCCAATATGCCTTAGTAACGGCTGAGCACTTCTGTTAATGTGAGACAATTTGTTTGTGGGTTCTGGAAGTAACGTGCCCGAGGGAAGGGGCCCATTTCATTGTCAAACAATCACCCACGTGAATCACCCGTTTTCCTGTCTGGTAACTCCTCTAACA

Function

NR:

description
tetraspanin-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956602.1 False 2316 mRNA 0.44 6 2143995 2149684
XM_036956600.1 False 2610 mRNA 0.44 9 2143995 2149711
XM_036956601.1 True 2505 mRNA 0.44 8 2143995 2149711

Neighbor

gene id symbol gene type direction distance location
LOC110499714 LOC106609803 coding downstream 5907 2129033 ~ 2138088 (-)
LOC110512520 LOC106609724 coding downstream 15285 2113042 ~ 2128710 (-)
LOC110499711 ptprr coding downstream 58191 1991477 ~ 2085804 (-)
LOC118942826 NA coding downstream 153963 1985910 ~ 1990032 (-)
ptprbl LOC106609809 coding downstream 158691 1863974 ~ 1985304 (-)
LOC118942828 LOC106594636 coding upstream 1272 2150983 ~ 2158956 (-)
LOC110499718 LOC106594636 coding upstream 40428 2190139 ~ 2223200 (-)
LOC118942830 NA coding upstream 879638 3029349 ~ 3030468 (-)
LOC110499739 grip1 coding upstream 1438819 3585864 ~ 4306764 (-)
trnav-uac-23 NA coding upstream 2064181 4213892 ~ 4213965 (-)
G1701020 NA non-coding downstream 8753 2134847 ~ 2135242 (-)
G1701014 NA non-coding downstream 26471 2117178 ~ 2117524 (-)
G1700978 NA non-coding downstream 41322 2101580 ~ 2102673 (-)
G1700990 NA non-coding downstream 76683 2066920 ~ 2067312 (-)
G1700985 NA non-coding downstream 85317 2057801 ~ 2058678 (-)
G1701038 NA non-coding upstream 24612 2174323 ~ 2186258 (-)
G1701040 NA non-coding upstream 27146 2176857 ~ 2178915 (-)
G1701045 NA non-coding upstream 61293 2211004 ~ 2212043 (-)
G1701046 NA non-coding upstream 65987 2215698 ~ 2216205 (-)
G1701065 NA non-coding upstream 117789 2267500 ~ 2267900 (-)
LOC118942825 frs2 other downstream 698119 1363229 ~ 1446417 (-)
LOC110511372 LOC106592130 other downstream 820632 1319221 ~ 1348497 (-)
G1700312 NA other downstream 1789486 352487 ~ 354509 (-)
G1701041 NA other upstream 38722 2188433 ~ 2189666 (-)
G1701824 NA other upstream 422963 2572603 ~ 2577051 (-)
G1701930 NA other upstream 634231 2783942 ~ 2829582 (-)
G1702117 NA other upstream 1079291 3229002 ~ 3230041 (-)
G1702141 NA other upstream 1131391 3281102 ~ 3518377 (-)

Expression


Co-expression Network