LOC110499736


Basic Information

Item Value
gene id LOC110499736
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2533735 ~ 2540052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470000.2
CCAATGAGAGGAGCGTATTTGAAACACCACTTTCGAAATGTCCTATTTGACACGAACTCAGCTGATCGTTACTAAACTAACTGGATCTCAAGCCTTGTCTACTTTTTCCTACTTGTTACACGATTGTGGCTaataagatttttaaaaagaagGCTTTCTGCAGAGAAAATGAGCTCTGGAAAAGCACTACAGTCAATGTCTCCTCACAACAATCAACCGCCGCCGACACCAAGCTTGGCGAAAAGAAAGAAGATTCAAGAGAAGTCTGCAATAAGGAGTCCAACAGACAGTGTGATGTCCCCATGTACAAGACAGCTCATGAAGAAAGCTATCAAGGACATACCGTCATCTCCCAGACCCCGACGGGAAGCGAAAGAGAACACTGCAAATAAATGAATGACCTTTTTATGTACAGTGTGATGTCTTTACGGTATTCCTCTCTCTGCTAAGATGGTCAGAGCAATCAATCATTGACACTTTCCTGACATTATATACCGTCTTTTTAAGATGTTCTTACTAACCAAGCTGCTCACACTTTATTGATCCATTATGCAATATGGGGGTGAGGGGGTTATATTCTTCATCAATATGGTGTAtatggtggagggggttatattcTTCATCAATATGGTGTATATGGTGGAGGGGGTTACATTCTTCATCAATATGGTGtttatgtggggggggggggggggtgtatattcTTAATCTAAATCGCACTGTTCGGGTTTATTGTTATTCTTGTGAATGTATAATGCTATTTGCACTTTAGAGGACATATGCTGTTCATTGTACACTGCTTTAAGTGGGGGGGTGGGGTTATCTCAAACAAGTGTTCTGTATGTGTGCCCTTTGCACAGGTAGATTTCCATGGTTtaagaaaataaaacaaaaagtagaCTACTTTATATTCTGTTTGTACATTGGCTTTATGTTGCTCAGTTTTAAATATGTAACTAGCAAAAAAAGGACTTAGCTCACTGCTTTCAATAAACATATTTGATATGGAAGAGA
>TU1946866
ATTTGACACGAACTCAGCTGATCGTTACTAAACTAACTGGATCTCAAGCCTTGTCTACTTTTTCCTACTTGTTACACGATTGTGGCTaataagatttttaaaaagaagGCTTTCTGCAGAGAAAATGAGCTCTGGAAAAGCACTACAGTCAATGTCTCCTCACAACAATCAACCGCCGCCGACACCAAGCTTGGCGAAAAGAAAGAAGATTCAAGAGAAGTCTGCAATAAGGAGTCCAACAGACAGTGTGATGTCCCCATGTACAAGACAGCTCATGAAGAAAGCTATCAAGGACATACCGTCATCTCCCAGACCCCGACGGGAAGCGAAAGAGAACACTGCAAATAAATGAATGACCTTTTTATGTACAGTGTGATGTCTTTACGGTATTCCTCTCTCTGCTAAGATGGTCAGAGCAATCAATCATTGACACTTTCCTGACATTATATACCGTCTTTTTAAGATGTTCTTACTAACCAAGCTGCTCACACTTTATTGATCCATTATGCAATATGGGGGTGAGGGGGTTATATTCTTCATCAATATGGTGTAtatgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470000.2 False 1014 mRNA 0.40 4 2533735 2540052
TU1946866 True 557 lncRNA 0.41 4 2533779 2539639

Neighbor

gene id symbol gene type direction distance location
trnak-cuu-147 NA coding upstream 406 2533257 ~ 2533329 (+)
LOC110499733 LOC106609838 coding upstream 2278 2509027 ~ 2531457 (+)
trnak-cuu-146 NA coding upstream 4790 2528873 ~ 2528945 (+)
trnak-cuu-145 NA coding upstream 5433 2528230 ~ 2528302 (+)
trnak-cuu-144 NA coding upstream 6026 2527637 ~ 2527709 (+)
LOC110500958 LOC106609839 coding downstream 956 2541008 ~ 2575182 (+)
LOC110519746 LOC106597902 coding downstream 39180 2579232 ~ 2580459 (+)
LOC110519348 tbc1d15 coding downstream 48590 2588642 ~ 2667278 (+)
LOC118942987 NA coding downstream 190589 2730641 ~ 2731813 (+)
LOC110499725 trhde coding downstream 279835 2819887 ~ 3237572 (+)
G1701167 NA non-coding upstream 29946 2503461 ~ 2503789 (+)
G1701165 NA non-coding upstream 36710 2496392 ~ 2497025 (+)
G1701163 NA non-coding upstream 41217 2490955 ~ 2492518 (+)
G1701137 NA non-coding upstream 77873 2455662 ~ 2455862 (+)
G1701136 NA non-coding upstream 79333 2454081 ~ 2454402 (+)
G1701154 NA non-coding downstream 37881 2577933 ~ 2578978 (+)
G1701184 NA non-coding downstream 43709 2583761 ~ 2583988 (+)
G1701186 NA non-coding downstream 46129 2586181 ~ 2586423 (+)
G1701193 NA non-coding downstream 51359 2591411 ~ 2591699 (+)
G1701196 NA non-coding downstream 67154 2607206 ~ 2609450 (+)
G1699934 NA other upstream 664181 1867694 ~ 1869554 (+)
LOC110499743 cnot2 other upstream 764458 1688942 ~ 1769720 (+)
LOC110500915 LOC106576535 other upstream 864515 1607414 ~ 1669220 (+)
G1699804 NA other upstream 994855 1537956 ~ 1538880 (+)
G1699724 LOC106592130 other upstream 1190597 1342499 ~ 1343138 (+)
G1701265 NA other downstream 304652 2844704 ~ 2849603 (+)
G1701596 NA other downstream 1233987 3774039 ~ 3776261 (+)
G1701654 NA other downstream 1392735 3932787 ~ 3936037 (+)
LOC110516816 LOC107655592 other downstream 1844004 4384016 ~ 4441236 (+)

Expression


Co-expression Network