LOC110519746 (LOC106597902)


Basic Information

Item Value
gene id LOC110519746
gene name LOC106597902
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2579232 ~ 2580459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956611.1
ACTGAGTAAATGGTTCACTATTCATCTGTATAGAACTCTTGAGTTTAGGCGTTTTGATACCAAAGGATCCCAGAGTTGATCTGAAAGATGAGGACCTTCGTCGCTCTACTGTTTGTTCTCTGCAGCTGTCTCTCTGAGCTGCAGGTTTTTCAAAGTAGCGACATTGACAAGAAGCTAATCTTTATGGAAACCACAGGGAGGACCAGCGAGAGCCAGTTGGAGGAACAGAGAGTCCTACTCCAGGAGCTGAGAGCCATTGTGGCTCAACAGAGCACCAAACTGAATGAGATGGGAGCCACCGTGGAGGAACTGAAGAGAGCGAACGGAGAGAGACCGAAGGTGGCCTTCTCAGCCTCGCTGTCTGAATCCAAAGGACCAAATAGTGATGATGTCATCCTGGCCTACAAACATGTCTTCAACAATATTGGTGAGGCTTACAGTCCGGTGACGGGTATCTTCAGAGCACCGGTTAATGGAGTCTACTACTTCACATACACCGCCTTTACAACCTCCAGCAAGGGGAGAAGAGTGTCGCTGTATAAAAATGGACTCGTAATGGTGACTGTGACCGACGATGTTTCAGACTCGGAGGACGGTGGAACCAATGGTGTCACACTGCAGTTGGATGCAGGAGACGAGGTCTACACTCGACTGATGGAAGGATTTAACATCTACGATGACAATAATCACCACAGCACCTTTACTGGCTTTCTGCTCTTCACTTAGAAAACAGTTTATTCTATCGCTGAATCCTACTGCTTTATAAGGATTTAATGACATATAGTACTATGATTTAATGACATATAGTACTATGATTTATGACtaggacaaaaaaaaatgtttatgatATTTTTTGTGTGAACTAAGCATTGATAACAAGGTGATAAACAAACAATCGTGTGTCTTCATCATTTAACCCACCGCATCTGAATCAGAACCAACCAGTCCTGCGGGATATATTAACAAGCTCAAGTTATTTTTCAGTTATTTTTGTACGTCCTGATCGGGTGACGCAATCTTTGTGCTGCTTTGTGGCAGAATGAAAGTGTAGACCTGATTCTCTTTTCAATAACGGACTAGTGAATGATTTTTATAAATCATTTGTTTGATCAATGAGACAGAATGGGAAGTTGGAAACGGGCCTCCATGTCTAATagataaataaatgttattttccaATTAAGAAAG

Function

NR:

description
complement C1q-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956611.1 True 1188 mRNA 0.42 2 2579232 2580459

Neighbor

gene id symbol gene type direction distance location
LOC110500958 LOC106609839 coding upstream 4050 2541008 ~ 2575182 (+)
LOC110499736 NA coding upstream 39180 2533735 ~ 2540052 (+)
trnak-cuu-147 NA coding upstream 45903 2533257 ~ 2533329 (+)
trnak-cuu-146 NA coding upstream 50287 2528873 ~ 2528945 (+)
trnak-cuu-145 NA coding upstream 50930 2528230 ~ 2528302 (+)
LOC110519348 tbc1d15 coding downstream 8183 2588642 ~ 2667278 (+)
LOC118942987 NA coding downstream 150182 2730641 ~ 2731813 (+)
LOC110499725 trhde coding downstream 239428 2819887 ~ 3237572 (+)
LOC110516257 LOC106590998 coding downstream 804997 3385456 ~ 3391594 (+)
irak3 irak3 coding downstream 963193 3543652 ~ 3562592 (+)
G1701154 NA non-coding upstream 254 2577933 ~ 2578978 (+)
G1701173 NA non-coding upstream 43356 2535371 ~ 2535876 (+)
G1701167 NA non-coding upstream 75443 2503461 ~ 2503789 (+)
G1701165 NA non-coding upstream 82207 2496392 ~ 2497025 (+)
G1701184 NA non-coding downstream 3302 2583761 ~ 2583988 (+)
G1701186 NA non-coding downstream 5722 2586181 ~ 2586423 (+)
G1701193 NA non-coding downstream 10952 2591411 ~ 2591699 (+)
G1701196 NA non-coding downstream 26747 2607206 ~ 2609450 (+)
G1701156 NA non-coding downstream 51254 2631713 ~ 2632451 (+)
G1699934 NA other upstream 709678 1867694 ~ 1869554 (+)
LOC110499743 cnot2 other upstream 809955 1688942 ~ 1769720 (+)
LOC110500915 LOC106576535 other upstream 910012 1607414 ~ 1669220 (+)
G1699804 NA other upstream 1040352 1537956 ~ 1538880 (+)
G1699724 LOC106592130 other upstream 1236094 1342499 ~ 1343138 (+)
G1701265 NA other downstream 264245 2844704 ~ 2849603 (+)
G1701596 NA other downstream 1193580 3774039 ~ 3776261 (+)
G1701654 NA other downstream 1352328 3932787 ~ 3936037 (+)
LOC110516816 LOC107655592 other downstream 1803597 4384016 ~ 4441236 (+)

Expression


Co-expression Network