XLOC_003619 (tkta)


Basic Information

Item Value
gene id XLOC_003619
gene name tkta
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36989696 ~ 37035835 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007047
CCCCCTCCCCCCTCTCTCTGaatttttctgtctgtctatctctctctctctctctgtctcgaCCTGTGCTGCGGCTCATAGTGAAGTGTGTGCATTGTATGTGCGCTGTCATAAAGCAGCCTCCCTCTCTTCTCCTCCTTctttctcattctctctctcacacacacgcagccGCTGCTCCTCAAGCTCCATCTCTCCTTCACTTTGTGCTGCTGTCGGGCCGAACTCATGGAGGACTATCACAAACCAGACCAGCAGACGGTGCAGGCGCTCAGGAACATCGCCAACCGCCTCCGAATCAACTCCATCAAAGCCACCACTGCTGTGGGCAACGGGCATCCGACGTCATGTTGCAGTGTGGCGGAGATCATGTCTGTGCTGTTTTTCCATACCATGAAGTACAGGCCGGATGACCCCAAAAACCCCAATAATGACCGCTTCATCCTGTCCAAGGGTCATGCAGCTCCTGTGCTCTACTCTGTATGGGTGGAAATTGGTTTCCTGAAGGAGTCTGAGCTCCTGAGTATGTGCCAGGTGGATTCCACTCTGGAGGGACACCCCACACCCaagCAGCAGTTTGTGGATGTGGCCACAGGCTCTCTGGGACAGGGGCTGGGCGTAGCCTGTGGAATGGCATATACGGCCAAATACTTTGACAAATCTAGTTACCGTGTGTACTGTCTGCTGGGCGATGGAGAGATGTCTGAGGGCGCCGTATGGGAGGCCATGGCCTTCGCCTCCTACTACCAACTGGATAATCTGATGGCCATACTGGACATCAACCGGCTGGGCCAGAGTGACCCAGCACCACTGCAGCACCATGTGGAGAAGTACCAGAGACGCTGTGAGGCCTTCGGGTGGCATGCCATCATTGTGGACGGCCACAGTGTGGAGGAGCTGTGTAAAGCCATGAGCCAACCTCGCCACCAGCCCACCGCTATCATCGCCAAGACCATCAAGGGCAAAGGCATTCCTGTGGCAGAAGATAAGATGGGATGGCATGGCAAGGTGCTGTCAAAGGACATGGCGGAGAACGTGATGAGAGACATTCAGAGCCGCATAATGAACAGTAACAAGCGCATGTACCCGGCTTCACCCGTCGAGGACGCTCCACCCGTGAGTCTGCGCAACATCCGCATGCCCAGCGCCCCCAGCTACAAACCTGGAGAGAAGGTCGCCACATGTAAGGGGTATGGGATGGCTGTGGCCAAACTGGGGCGTTACAACGAACGAGTTGTGGCGATGGATGTCGACACCAAAAACTTCACCTTCTCTGAAATCTTTAAAAATGAGCATCCCAACCGCTTTATTGAGTGCTACAGCGCAGAGCAGAACATGGTTAGTGTTGCCACAGGCTGTGCTGCACGTGAGCGAAACATTGTGTTCGCCAGTGGCCTCGCCACCTTTTTCACCCGCGCCTATGACCAGGTCCGCATGGCTGCCATCTCAGACAGCAACATTAACCTCTGCGGCTCCCACTGCGGCCTGTCTGTTGgaGAGGACGGACCGGCTCACATGGGGCTGGAGGACATGGCTATTTTTAGAGCCATCCCCACTGCCACCATTTTCTACCCGAGTGATGCCGTGTCTGCTGAAAAGGCTGTGGAGCTCGCAGCCAACACAAAGGGTGTTTGCTACATCCGCACCACTCGTCCAGAGACTGCAATCATTTACAACAGCAATGAGGACTTCCATGTTGGCCAAGCCAAGGTGGTGTGCCAGAGTAAAGAAGATCAGGTTACAGTGATCGCAGCAGGAATGACCCTCCATGAAGCTCTGGCCGCAGCCGAGCAACTTAAAAAAGAGAGGATTTACATCAGAGTGATCGATCCTTTCACAATCAAACCCCTGGACAATAAAACCATCGTGGATCATGTGCGTGCCACCAGGGGTCGTGTCATCACGGTTGAGGATCACTATTATGAAGGTGGCCTAGGGGAAGCGGTGTGCTCCGCTATTGTCAATGAGCCTGGCTTCACTTTCCAGCGTCTGGCAGTCGCTCAAGTTCCCCGAAGCGGCAAAATGAACGACCTGCTGAAAATCTACGGCATTGACCGCGACTCCATCACTCAGATGGTGCGGAAGATGCTCAGCTCCTCGGCCAATGCCAAGTGATCCTGCTCGCTCTGCCCCGCCCACTTCAACCTCAACCAATCAGATAACACTGTGTCACATGACTCCCGTTCTTCAGATTGTGGCCCCTCCCTTCACCTCATTCACTGTCAGTCACCCTAACGTGAGTATAATAGTAATGTGAGAAACGTGCTGTACATTTTAAAGTAATGTTCactttttgttttgggttttcaTTACAAGTGTGCTACAGGTTAAACGTTTTGGgtaacattcattttttttctgttatataaaataaatcaaagggatagttcacctaaaactgaaccTCTACTTGTTTTAGGGTTTTCTTCTATTGCAcatatattttgaataattttggaAACTGGTTTCTaatgactttcttttttatttcctactatggatgtcaatggctacaggttacaacatttttcagaatatctctTTTGTGcttgtgtttaatagaaaaaagcaacattctgaaaacgtacccctatatacatttttggagatcacaaattatgtagccagaagtacgtatggcagcatttcgtctttaaaactaaTACTACTGGGCAATATGACCCCTTTCCTTTTCgtgctagcagctgaccgcttacgCTTGTATGGACGACTTTCCCACTGTTATCAGTATGTCCAGTGGCTTGCAGcatatgtcggcagacttgagaagAGCTGAACGCGATGACAGGATTTGAGTCTGGCGTAGAACAGTTCTAGAAAGTgggtaagataaaaacaaaagccaaaacagaaaataaacaagtaaatagcagggtgagaaaAATGGTAAAAAATCAGGCAAAGgcatttcttttttctggattgcttttcaaaactttTTCGGTTGGGTTTATTAAAGTGGGTGGGTCAATAtgcgcttttgaaaacactatcggttgggtttagggaaggaggtgggtgggtgggtcattatgtgcttttgaaaacactatcggttgggtttagggaaggaggtgggtgggtgggtcaatatgtgcttttgaaaacactttcggttgggtttagggaaggaggcgGGTGGGTGGGTCattatgtgcttttaaaaacactatcggttgggtttagggaaggaggtgggtgggtgggtcaatatgtgcttttgaaaacattatcgcttgagtttagggaagggggtgggtggggttatctagtcggttggtcagtcagtcagtcgacagtggcctctggtggatttatgcaagaatggcactcgtgagagaaatctAAAAAAGCATATATAGCGGCTTCTGGTAGATTCacaaaagcaaaaactgcaacaaaaacaTTTCTCCTGGAACATATTTGGCGTTCTTCAgtaatgtatatagggatacattgtaaaaaatcctggttgtcttatatttttaagctgaatcaaattaaccttacgAGTCCATTGAGCTTATactatgttaaactgacttaaaacaggtTGCATAACTTttcaaattaagttagaacatgataaCCTTAGTTTGATAAGTTACTATGacctaaaaacaaatgctgtcaggactaactgaatatatatatttttacagtgtacgttttcagaataagcctgggttggaaaaaaggatcccactttatattaagtgtccttacctactatgtacttgcattaaaaaatacttttaactaAGTAAATACTCTAACtacttacaaaaaataaatacttcacaacaataaacaaaaaacaaatgtacttactgtgttcataatgtatttgagaacacttgtgatGGGATACAGGTCAGGTTATGGACAGTTGTGGTGGTATGGATAAGTTTAAGGGTGGATTAAGGTGTAAGgggtggtcaacagtgtaattaaaaatgtaattacagaaattgattacagatgtaattgcatgcaggtatttaatcaagcataagtacaatgcAAAAATATGTATTCACACAATAAGtaaattgttgttattaatttctgtgtaagtacacttaatataaagtgaaacagaaaaaagaaaggttTCTATCATAAAGGTTTGGATGTACTTGAGCCTAAGTAAATGGTTCATTTTGATTTTGcaggtgaattattcctttaatcATTTGAATTATTATGGATGCATTCAATTTATCAAAAAGTATGTTAAAAAGTATATAGAAAAGATTGCTATTTCAGATACTTTTGAACTCTTTTGAACTGCATTTAGCAGTGATAATACAAAATGTTTTAGCtgcaaattagtaaaataaaatgatttctaaAATAATCACGTGACTGAATACTGCAGTACATTCAGCTTTGTGTCACAGGGACGaaaatacatgttaaaatatattcaaatagaaatattgtgattatttttcaacatttttaccacaacattttattttttgatcaaagagatgcatttttttgttcaaaaacacaaaaaaacttacCAAACCTCAGACTTGTTAATGCTAGTGTtaatgcaaatacacacacatacacaagagtCTTTGTACTAACAGTTTAAAATCGACATGAAATCacatttactataacttctactTGCATTATGCAGCatattttagtcttgtttctagtgtaaatatttaaaaattcctaATCCAGAAGCATTTATACACGCaacaaaatattgtcttgttttaagaaataatatgccaaaattaagtgactttttccttaaataagctaaataatctgccagtggggtaagagAAATaaccttgttttttcttttgacataagattatttgtcttaaccaactggcagattattttgcttgtttgaaggaaaaactcaatgttggcatattatttcttaaaacaagactatgcattttgcttgtttaaaaagGGCTTCTTGATGTAAGAAAGTTTAAGTATTTGGactagaagaagaagaaaaaaagtgttttttgcaattaaaaaaaatgttcacagattaaacatttaatacacATTTTGGCCCTGTTTAATCTTAGTATTTAAATGCTGTTCGATCAATCAGATCACAGGTATCTGAGAGAGATGAGATAAATGTCTTAATTCATCTCTCTTGTCTACATTCAACCACtttccagaattttttttaaataaagagtttaaataaaaacattggctATAAGCTTGCTCAATTTAAATATAATCCCTAAATAAGACAATGGAAAACAATATGAAGAGTTTCAGTTTTGCTTTTATAACCacaaaatgcatcttaatatcAGACGTAAACAGAGCCTCATCGTGACTTTGAACCTGTCAAATATGTAGCTACGCTCAAGCATATTTTTCACCTCAGAAGACATCAGTATGCTGTATAACCCGACACTTGTGTTTTTAACTGTCATTTGATAAGAcccaacaacaaaactgtttttaCTACTTTTATATTGTAATGGTGTAGCTATGACGGCCGGGCGGGGCTGGACTTCACAGGAAACGTGATGTTGATGTTGCATTAGTAGAGTGTAGTGTtgagaaataagacaaaaaaaacgaGCATCAAATGAGAATGTCTGTAGGGTGAGTCAATTCAAAAGTGTGCAGTCAGTCGAGCAGTTAATGGTTTGTCTTCAATGAAAGTGTTTGTAGTTTGTAGATGGAGTAGCATTTTGTGATGAGATGGTTGAAGGTGGAACGTGCTGTTATATCTGAACTATGAACAACAACAAACACCTCCTCTGTTATTTTTCTATGTATCTCAACAAGTCATTGATTAAAGCCCTCTACATTTGAGTTTGA

Function

symbol description
tkta Predicted to enable thiamine pyrophosphate binding activity and transketolase activity. Predicted to be involved in pentose-phosphate shunt, non-oxidative branch and ribose phosphate biosynthetic process. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human TKT (transketolase).

GO:

id name namespace
GO:0009052 pentose-phosphate shunt, non-oxidative branch biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0004802 transketolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00030 Pentose phosphate pathway
ko00710 Carbon fixation in photosynthetic organisms
ko01051 Biosynthesis of ansamycins

ZFIN:

id description
ZDB-GENE-130530-578 Predicted to enable thiamine pyrophosphate binding activity and transketolase activity. Predicted to be involved in pentose-phosphate shunt, non-oxidative branch and ribose phosphate biosynthetic process. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human TKT (transketolase).

Ensembl:

ensembl_id ENSDARG00000029689

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007047 True 5862 mRNA 0.41 14 36989696 37035835

Neighbor

gene id symbol gene type direction distance location
XLOC_003618 parapinopsinb coding upstream 200899 36777613 ~ 36788797 (+)
XLOC_003617 si:ch211-11c3.12 coding upstream 302429 36683859 ~ 36687267 (+)
XLOC_003616 si:ch211-11c3.11 coding upstream 305970 36675599 ~ 36683726 (+)
XLOC_003615 si:ch211-11c3.9 coding upstream 315320 36665359 ~ 36674376 (+)
XLOC_003614 CR457444.3 coding upstream 331057 36657025 ~ 36658639 (+)
XLOC_003621 bicd2 coding downstream 13270 37049105 ~ 37088934 (+)
XLOC_003622 card19 coding downstream 59330 37095165 ~ 37101987 (+)
XLOC_003623 NA coding downstream 100965 37136800 ~ 37170438 (+)
XLOC_003624 itih3b coding downstream 142436 37178271 ~ 37200200 (+)
XLOC_003625 zgc:112265 coding downstream 165648 37201483 ~ 37229533 (+)
XLOC_003369 CR854846.2 misc upstream 20866614 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 24277700 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 24295433 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 24304097 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 24309668 12679732 ~ 12680028 (+)
XLOC_003613 CR457444.4 non-coding upstream 332931 36653213 ~ 36656765 (+)
XLOC_003611 CR457444.6 non-coding upstream 348841 36600242 ~ 36640855 (+)
XLOC_003612 CR457444.10 non-coding upstream 376532 36612354 ~ 36613164 (+)
XLOC_003610 CR457444.12 non-coding upstream 399208 36587329 ~ 36590488 (+)
XLOC_003626 CABZ01065569.1 non-coding downstream 178273 37214108 ~ 37214223 (+)
XLOC_003628 CR936337.1 non-coding downstream 328611 37364446 ~ 37364560 (+)
XLOC_003634 NA non-coding downstream 805422 37841257 ~ 37848711 (+)
XLOC_003636 NA non-coding downstream 959231 37995066 ~ 38000612 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_09475675_09494799 TKTA coding CI01000306 null 9475531 ~ 9495855 (+)
bowfin (Amia calva) AMCG00009571 LOC107087052,LOC105890629 misc CM030126.1 CM030126.1 41814559 ~ 41826934 (-)