si:dkey-39a18.1 (LOC106576636)


Basic Information

Item Value
gene id si:dkey-39a18.1
gene name LOC106576636
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4451116 ~ 4475091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956636.1
TGTCcgtccccatagaagaacccaTCAGCAGCAGTGGGCTGGCTTAACTGGGACTTTAGAGCTGACCTATCCCCTCCGTGTTAGTTCCCGGTGTCCCTCTGCAAGAGGTAGGAGGGGGCAGAGGCAGGCACCCAGGAGCCTCCTCAACACTCTACCTCCCACTAGCCACCCTGCTCAACGGCCGACATGACCAGCACTCCGGTACGACTCACTACTGAACTTTACACGATAACGTAACTCCGTGTCTTTTGAGTAGATATGAGGACAACAGCAGCATCCTGAGCTGACAAAGAAACACTTAATGGAAGGAACAAGAGGCTGGCCCTCGGATCAGCAGCACTTCCTTAAGATGATGCACCTCCCCAGGATCACGAAGAGAACCCAGTCACCCCACAGAGAGACCGTTTCCCCTGTCCTCTCATACTACTCAGAGCCGGCCTACCTGCAGCACCGTAAGGATGTGACTAGAGATCTGGCCCCGCTGCCTGGTGCAACGAGAAGAGGAGCCCTGGATGAGGAAGACCAGGAAGAGACGCTGAGCCTACGGAGCATGCCCAGTATGAGAAGCACCCTGAGTCACGCCTCAAAGGTGAAAAGGTCACGGGGCTTCCCGAAGAGACACACCATCCCCGAGCTCAGACTGCCCCCTGTTACTAAGATTCATCCTGACCCCAGAGCCAGTCTGGAATTGAGGGGTACTGGCTACCTGAGATGTTCCAGACTTTCACCCATCATCAAATCTACCAGAACCCATGAGCCTCTGCACCAGGAAAGACCCCCAGGTCCAGCTGGGTACAGGAAAGACAAGCCGGACAGAGACAACATGAAGATGCAGATGTTGGTGGTGTTGGCTGTAGCAGCCTTGGTCCCCAGTCTGTCTGAGGGACGGATCCTTTCCAAATGTGAGCTGAAGAACTTGTTGGAGAAGGAGGCCCTCAAATTCAACATGACTGGGGGAGCCGGAGTGAAGAACCTGACAAACAACGATTTTGTGGCTAAAATCGTCTGCCACGTGGAGAAGGCCTCCGGTTTCAACACCAGTTTTGTGACTGCTTGGAGGGATGATGACGGCCCTGATGTACTCCCTACCCGCCCTGCCAAGGTTAATGACCGCCATCGCCCTGAGCCCCCTCCTAGGAGGGGTAAGAGACACGCTGGGGATGATGTTGACCCTACCCACCCTGCTAACAATGATAACCATCCTACCCGTCCTCCCCGCCCTAACTACCCTACCCGCCTTACCCTTCCTAACCGCCCGGAGCAGCCTCCTAAGAGGGGTAAGAGACACGCTGGGGATGATGTTGACCCTACCCACCCTGCTAACAATGATAACCATCCTACCCGTCCTCCCCGCCCTAACTACCCTACCCGCCTTACCCTTCCTACCCGCCCTGAGCAGCCTCCTAAGAGAGGTAAGAGACACGCTGGGAATCACTTCACCTCAGGAGAGGAAAGCTCCAGCGAAGAAGAGACCATGGGGACCCTCTACGGCTTGTTCCAGCTGAGCGATCGTGTGATTTGTTCCTCGGGCTCAACTCCATCGTTGAACCTTTGCCAGATGAACTGCAGTGCTTTGATTGACGACAACATAAGTGATGACTttaactgtgtgaagactatcaAACAGACAATGGAAAGTGGTCGCGGTCAACAAACAAAGGCTCTAAAGAGAATGATCAACCTGCTCTTCCAGAAGGAATGTGTCGCCACGGTGGCCTCCAGCTACTTCTCCAAGTGTTGAAGTGTTGCGATGTTAGACGACAATCCCCCCAATTGCAAAAAGATCCGAATTGGGCTGCCGGTGTTAATACAGCCGTTGTGTGTAACAATTAGTTCTCATCAGCTTCATGTTTTTCAAAGTACACCGGAATAGAATGTAGCATGTAGAAATAATAAAAACGAACATTACATTCA
>XM_036956631.1
CcgtccccatagaagaacccaTCAGCAGCAGTGGGCTGGCTTAACTGGGACTTTAGAGCTGACCTATCCCCTCCGTGTTAGTTCCCGGTGTCCCTCTGCAAGAGGTAGGAGGGGGCAGAGGCAGGCACCCAGGAGCCTCCTCAACACTCTACCTCCCACTAGCCACCCTGCTCAACGGCCGACATGACCAGCACTCCGGTACGACTCACTACTGAACTTTACACGATAACGTAACTCCGTGTCTTTTGAGTAGATATGAGGACAACAGCAGCATCCTGAGCTGACAAAGAAACACTTAATGGAAGGAACAAGAGGCTGGCCCTCGGATCAGCAGCACTTCCTTAAGATGATGCACCTCCCCAGGATCACGAAGAGAACCCAGTCACCCCACAGAGAGACCGTTTCCCCTGTCCTCTCATACTACTCAGAGCCGGCCTACCTGCAGCACCGTAAGGATGTGACTAGAGATCTGGCCCCGCTGCCTGGTGCAACGAGAAGAGGAGCCCTGGATGAGGAAGACCAGGAAGAGACGCTGAGCCTACGGAGCATGCCCAGTATGAGAAGCACCCTGAGTCACGCCTCAAAGGTGAAAAGGTCACGGGGCTTCCCGAAGAGACACACCATCCCCGAGCTCAGACTGCCCCCTGTTACTAAGATTCATCCTGACCCCAGAGCCAGTCTGGAATTGAGGGGTACTGGCTACCTGAGATGTTCCAGACTTTCACCCATCATCAAATCTACCAGAACCCATGAGCCTCTGCACCAGGAAAGACCCCCAGGTCCAGCTGGGTACAGGCCTGAGAAGAAGGGAGATGTTCCCTCTGGACTTCCGGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGAGTTTTAATAATGAGGACCTCCTCAAAGTACCTGTTGTGACCATGTCCAAGATAATTTCTGATCCACCTCCAACTGAGACCCAACGCATCACGTTCCACAGCCCCGCGCTGCAGGCCGTGTACCCGATCACCCCTGACAACGAAACACAAACCAGGAAGCCAGAGGAAGATAGAAAACCCCTGTATCCCAGAGTCCTCTCTTCTACATCCACCTGCGCTATATCTAACACCATCGGTCCTGAGAAAGTATACAGATTCCAGCCACACCTTCTGAGAGATAACCCCCCTCCATACTCCTCTGAGTGGACCGATCCAAAGGCTTTAACCCAAGGAAGGACTGAGTGGACTGAACCAAGGGCTCCAACCCAGGGGATGGGAGAGATGCTGTTGATCAGACTGAGCATCACATGGTCCAAGGCTGAGAACAGCAGCAACCTGAGACAGTCCCAGTCTCAGCTCCAGCGTTACCCCATCTGTCCCCTGAAACCAGCCCTGAGAAGACTACCCATCTCCAACACAAGGAGGCTGAGGGACTGGGGGAGACGGGGGACGACGTTGGGGTGtctgtgggaggaggaggaggggtgtgtccCACCCCCGGTCCCAGTCCAGCCTCGGTTACTGGAACCCTTTACAGGGTTCAAAGAGCACCTCTGTCGCCAGcttctccacccccccacccccctggcTCAGCTCCTGGAGAAGGCCTCAGAGGGAGACCATatagacacacaggcagacagaccgacagacagaacagtagacagacagtatagacagacaggtagacagaccggtagatagacaggtagacagaccggtagatagataggtagacagacaaggta
>XM_036956632.1
CcgtccccatagaagaacccaTCAGCAGCAGTGGGCTGGCTTAACTGGGACTTTAGAGCTGACCTATCCCCTCCGTGTTAGTTCCCGGTGTCCCTCTGCAAGAGGTAGGAGGGGGCAGAGGCAGGCACCCAGGAGCCTCCTCAACACTCTACCTCCCACTAGCCACCCTGCTCAACGGCCGACATGACCAGCACTCCGGTACGACTCACTACTGAACTTTACACGATAACGTAACTCCGTGTCTTTTGAGATATGAGGACAACAGCAGCATCCTGAGCTGACAAAGAAACACTTAATGGAAGGAACAAGAGGCTGGCCCTCGGATCAGCAGCACTTCCTTAAGATGATGCACCTCCCCAGGATCACGAAGAGAACCCAGTCACCCCACAGAGAGACCGTTTCCCCTGTCCTCTCATACTACTCAGAGCCGGCCTACCTGCAGCACCGTAAGGATGTGACTAGAGATCTGGCCCCGCTGCCTGGTGCAACGAGAAGAGGAGCCCTGGATGAGGAAGACCAGGAAGAGACGCTGAGCCTACGGAGCATGCCCAGTATGAGAAGCACCCTGAGTCACGCCTCAAAGGTGAAAAGGTCACGGGGCTTCCCGAAGAGACACACCATCCCCGAGCTCAGACTGCCCCCTGTTACTAAGATTCATCCTGACCCCAGAGCCAGTCTGGAATTGAGGGGTACTGGCTACCTGAGATGTTCCAGACTTTCACCCATCATCAAATCTACCAGAACCCATGAGCCTCTGCACCAGGAAAGACCCCCAGGTCCAGCTGGGTACAGGCCTGAGAAGAAGGGAGATGTTCCCTCTGGACTTCCGGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGAGTTTTAATAATGAGGACCTCCTCAAAGTACCTGTTGTGACCATGTCCAAGATAATTTCTGATCCACCTCCAACTGAGACCCAACGCATCACGTTCCACAGCCCCGCGCTGCAGGCCGTGTACCCGATCACCCCTGACAACGAAACACAAACCAGGAAGCCAGAGGAAGATAGAAAACCCCTGTATCCCAGAGTCCTCTCTTCTACATCCACCTGCGCTATATCTAACACCATCGGTCCTGAGAAAGTATACAGATTCCAGCCACACCTTCTGAGAGATAACCCCCCTCCATACTCCTCTGAGTGGACCGATCCAAAGGCTTTAACCCAAGGAAGGACTGAGTGGACTGAACCAAGGGCTCCAACCCAGGGGATGGGAGAGATGCTGTTGATCAGACTGAGCATCACATGGTCCAAGGCTGAGAACAGCAGCAACCTGAGACAGTCCCAGTCTCAGCTCCAGCGTTACCCCATCTGTCCCCTGAAACCAGCCCTGAGAAGACTACCCATCTCCAACACAAGGAGGCTGAGGGACTGGGGGAGACGGGGGACGACGTTGGGGTGtctgtgggaggaggaggaggggtgtgtccCACCCCCGGTCCCAGTCCAGCCTCGGTTACTGGAACCCTTTACAGGGTTCAAAGAGCACCTCTGTCGCCAGcttctccacccccccacccccctggcTCAGCTCCTGGAGAAGGCCTCAGAGGGAGACCATatagacacacaggcagacagaccgacagacagaacagtagacagacagtatagacagacaggtagacagaccggtagatagacaggtagacagaccggtagatagataggtagacagacaaggta
>XM_036956633.1
CcgtccccatagaagaacccaTCAGCAGCAGTGGGCTGGCTTAACTGGGACTTTAGAGCTGACCTATCCCCTCCGTGTTAGTTCCCGGTGTCCCTCTGCAAGAGGTAGGAGGGGGCAGAGGCAGGCACCCAGGAGCCTCCTCAACACTCTACCTCCCACTAGCCACCCTGCTCAACGGCCGACATGACCAGCACTCCGTAGATATGAGGACAACAGCAGCATCCTGAGCTGACAAAGAAACACTTAATGGAAGGAACAAGAGGCTGGCCCTCGGATCAGCAGCACTTCCTTAAGATGATGCACCTCCCCAGGATCACGAAGAGAACCCAGTCACCCCACAGAGAGACCGTTTCCCCTGTCCTCTCATACTACTCAGAGCCGGCCTACCTGCAGCACCGTAAGGATGTGACTAGAGATCTGGCCCCGCTGCCTGGTGCAACGAGAAGAGGAGCCCTGGATGAGGAAGACCAGGAAGAGACGCTGAGCCTACGGAGCATGCCCAGTATGAGAAGCACCCTGAGTCACGCCTCAAAGGTGAAAAGGTCACGGGGCTTCCCGAAGAGACACACCATCCCCGAGCTCAGACTGCCCCCTGTTACTAAGATTCATCCTGACCCCAGAGCCAGTCTGGAATTGAGGGGTACTGGCTACCTGAGATGTTCCAGACTTTCACCCATCATCAAATCTACCAGAACCCATGAGCCTCTGCACCAGGAAAGACCCCCAGGTCCAGCTGGGTACAGGCCTGAGAAGAAGGGAGATGTTCCCTCTGGACTTCCGGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGAGTTTTAATAATGAGGACCTCCTCAAAGTACCTGTTGTGACCATGTCCAAGATAATTTCTGATCCACCTCCAACTGAGACCCAACGCATCACGTTCCACAGCCCCGCGCTGCAGGCCGTGTACCCGATCACCCCTGACAACGAAACACAAACCAGGAAGCCAGAGGAAGATAGAAAACCCCTGTATCCCAGAGTCCTCTCTTCTACATCCACCTGCGCTATATCTAACACCATCGGTCCTGAGAAAGTATACAGATTCCAGCCACACCTTCTGAGAGATAACCCCCCTCCATACTCCTCTGAGTGGACCGATCCAAAGGCTTTAACCCAAGGAAGGACTGAGTGGACTGAACCAAGGGCTCCAACCCAGGGGATGGGAGAGATGCTGTTGATCAGACTGAGCATCACATGGTCCAAGGCTGAGAACAGCAGCAACCTGAGACAGTCCCAGTCTCAGCTCCAGCGTTACCCCATCTGTCCCCTGAAACCAGCCCTGAGAAGACTACCCATCTCCAACACAAGGAGGCTGAGGGACTGGGGGAGACGGGGGACGACGTTGGGGTGtctgtgggaggaggaggaggggtgtgtccCACCCCCGGTCCCAGTCCAGCCTCGGTTACTGGAACCCTTTACAGGGTTCAAAGAGCACCTCTGTCGCCAGcttctccacccccccacccccctggcTCAGCTCCTGGAGAAGGCCTCAGAGGGAGACCATatagacacacaggcagacagaccgacagacagaacagtagacagacagtatagacagacaggtagacagaccggtagatagacaggtagacagaccggtagatagataggtagacagacaaggta
>XM_036956634.1
CcgtccccatagaagaacccaTCAGCAGCAGTGGGCTGGCTTAACTGGGACTTTAGAGCTGACCTATCCCCTCCGTGTTAGTTCCCGGTGTCCCTCTGCAAGAGGTAGGAGGGGGCAGAGGCAGGCACCCAGGAGCCTCCTCAACACTCTACCTCCCACTAGCCACCCTGCTCAACGGCCGACATGACCAGCACTCCGATATGAGGACAACAGCAGCATCCTGAGCTGACAAAGAAACACTTAATGGAAGGAACAAGAGGCTGGCCCTCGGATCAGCAGCACTTCCTTAAGATGATGCACCTCCCCAGGATCACGAAGAGAACCCAGTCACCCCACAGAGAGACCGTTTCCCCTGTCCTCTCATACTACTCAGAGCCGGCCTACCTGCAGCACCGTAAGGATGTGACTAGAGATCTGGCCCCGCTGCCTGGTGCAACGAGAAGAGGAGCCCTGGATGAGGAAGACCAGGAAGAGACGCTGAGCCTACGGAGCATGCCCAGTATGAGAAGCACCCTGAGTCACGCCTCAAAGGTGAAAAGGTCACGGGGCTTCCCGAAGAGACACACCATCCCCGAGCTCAGACTGCCCCCTGTTACTAAGATTCATCCTGACCCCAGAGCCAGTCTGGAATTGAGGGGTACTGGCTACCTGAGATGTTCCAGACTTTCACCCATCATCAAATCTACCAGAACCCATGAGCCTCTGCACCAGGAAAGACCCCCAGGTCCAGCTGGGTACAGGCCTGAGAAGAAGGGAGATGTTCCCTCTGGACTTCCGGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGAGTTTTAATAATGAGGACCTCCTCAAAGTACCTGTTGTGACCATGTCCAAGATAATTTCTGATCCACCTCCAACTGAGACCCAACGCATCACGTTCCACAGCCCCGCGCTGCAGGCCGTGTACCCGATCACCCCTGACAACGAAACACAAACCAGGAAGCCAGAGGAAGATAGAAAACCCCTGTATCCCAGAGTCCTCTCTTCTACATCCACCTGCGCTATATCTAACACCATCGGTCCTGAGAAAGTATACAGATTCCAGCCACACCTTCTGAGAGATAACCCCCCTCCATACTCCTCTGAGTGGACCGATCCAAAGGCTTTAACCCAAGGAAGGACTGAGTGGACTGAACCAAGGGCTCCAACCCAGGGGATGGGAGAGATGCTGTTGATCAGACTGAGCATCACATGGTCCAAGGCTGAGAACAGCAGCAACCTGAGACAGTCCCAGTCTCAGCTCCAGCGTTACCCCATCTGTCCCCTGAAACCAGCCCTGAGAAGACTACCCATCTCCAACACAAGGAGGCTGAGGGACTGGGGGAGACGGGGGACGACGTTGGGGTGtctgtgggaggaggaggaggggtgtgtccCACCCCCGGTCCCAGTCCAGCCTCGGTTACTGGAACCCTTTACAGGGTTCAAAGAGCACCTCTGTCGCCAGcttctccacccccccacccccctggcTCAGCTCCTGGAGAAGGCCTCAGAGGGAGACCATatagacacacaggcagacagaccgacagacagaacagtagacagacagtatagacagacaggtagacagaccggtagatagacaggtagacagaccggtagatagataggtagacagacaaggta

Function

NR:

description
uncharacterized protein LOC110490684

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956636.1 False 1914 mRNA 0.53 10 4451116 4475091
XM_036956631.1 False 1815 mRNA 0.55 6 4451119 4459751
XM_036956632.1 False 1812 mRNA 0.55 6 4451119 4459751
XM_036956633.1 False 1763 mRNA 0.55 6 4451119 4459751
XM_036956634.1 True 1760 mRNA 0.55 6 4451119 4459751

Neighbor

gene id symbol gene type direction distance location
LOC110516816 LOC107655592 coding upstream 9880 4384016 ~ 4441236 (+)
helb LOC106599032 coding upstream 867618 3565639 ~ 3583498 (+)
irak3 irak3 coding upstream 888524 3543652 ~ 3562592 (+)
LOC110516257 LOC106590998 coding upstream 1059522 3385456 ~ 3391594 (+)
LOC110499725 trhde coding upstream 1213544 2819887 ~ 3237572 (+)
LOC118942787 LOC106594295 coding downstream 376898 4851989 ~ 4852917 (+)
LOC118936571 rap1b coding downstream 523135 4998226 ~ 5111935 (+)
LOC110490690 nu107 coding downstream 645029 5120120 ~ 5173429 (+)
LOC118942832 LOC106576641 coding downstream 698569 5173660 ~ 5179939 (+)
LOC118942833 NA coding downstream 700404 5175495 ~ 5176684 (+)
G1702543 NA non-coding upstream 6876 4443593 ~ 4444240 (+)
G1702542 NA non-coding upstream 8362 4442252 ~ 4442754 (+)
G1702563 NA non-coding upstream 21589 4428788 ~ 4429527 (+)
G1702561 NA non-coding upstream 33761 4415795 ~ 4417355 (+)
G1702560 NA non-coding upstream 35362 4415162 ~ 4415754 (+)
G1702579 NA non-coding downstream 3765 4478856 ~ 4479378 (+)
G1702581 NA non-coding downstream 15597 4490688 ~ 4490921 (+)
G1702584 NA non-coding downstream 23309 4498400 ~ 4499016 (+)
G1702586 NA non-coding downstream 28888 4503979 ~ 4504212 (+)
G1702587 NA non-coding downstream 31451 4506542 ~ 4506886 (+)
G1702554 NA other upstream 55601 4394993 ~ 4395515 (+)
G1701654 NA other upstream 515079 3932787 ~ 3936037 (+)
G1701596 NA other upstream 674855 3774039 ~ 3776261 (+)
G1701265 NA other upstream 1601513 2844704 ~ 2849603 (+)
G1702793 NA other downstream 577356 5052447 ~ 5054464 (+)
LOC110516940 LOC106609861 other downstream 709383 5182911 ~ 5200193 (+)
G1702856 NA other downstream 779074 5254165 ~ 5254885 (+)
LOC110511233 LOC107655547 other downstream 1110440 5563222 ~ 5598052 (+)
G1703391 NA other downstream 1242108 5717199 ~ 5717701 (+)

Expression


Co-expression Network