LOC118942831 (LOC106576636)


Basic Information

Item Value
gene id LOC118942831
gene name LOC106576636
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4459746 ~ 4461571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038458.1
aaggtagacagacaggtagacagacaggtagacagaccgGTAGACAGGCAGTAtcgacagacaggtagacagaccggtagatagacagtatagacagacaggtagacagacccGCAGACAGACAGGTAATGTCCCAGGTTCCTCAGGTGCATACCCTCCAGACCCCCTGCAGTACTCTGCCAGCCCATACCGTGCAGCTGTCTGGATCTCAGGGTCCAGGAGGGGCTCTACCCAGAATCCCCATGACCAGACCAACTCCTTCCCCCAAGCTccccctccttcactcacacagTAAGAACAGGCATTCAGCATAGATAGATGGCCTGTTCTACCACGGAACCGTCAATCTACAGGCCTGTTCTACCATGGAACTGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCATGAACCGTCACTCTACAGACCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGACCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACAGAACCGTCACTCTACAGGCCTGTTGTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACTATGGAACCGTCACTCTACAGGCCTGTTCTACCACAGAACCGTCACTCTACAGAACCGTCAATCTTTAGGGGCGCCGAGACACAGCCCTGGGGGACTCTGCCTTCAGCACTGCTAATAAGGAGGATAATTGTTTTAGCTATACAGAGGATTGCTACGGCCTGGTCTGCTGAGACGAGCACcatcccaaaacacacagcatggTCAGTCCAGACACCACAGAGACGAGGCCTCCTAAATGGAACACTATCCTTatacagggcccatagggctctagtcagaGGTAATGCAACTCTACACGAAATAGGGACTCAGCCATGGCCTGATCGATAGTCATTGATGTTGGTTGTAGTGGTGTGAGAGTTGTTTGTTAGCTGTGACAAGACTGTAAAGTCTGTAAAAATATATGTCCTGTGTAGTTAGCTGCTACATTCTGTTCTCTATGTCCTGTGTAGTTAGCTGCtacattctgttctctctgtcctgtgtagTTAGCTGCTACATTCTGTTCTCTATGTCCTGTGTAGTTAGCTGCtacattctgttctctctgtcctgtgtagttagctgctacattctgttctctctgtcccgtGTAGTTAGCTGCTACattctgttctctgtctgttctctgtctgttctctctgtcctgtgtagTTAGCAGATACATTCTGTTCTCtatgtctgttctctctgtcctgtgtagttagctgctacattctgttctctctgtcctgtgtagttagctgctacattctgttctctctgtcccgtGTAGTTAGCTGCTACattctgttctctgtctgttctctgtctgttctctctgtcctgtgtagttagctgctacattctgttctctctgtcctgtgtagttagctgctacattctgttctctctgtcctgtgtagTTAGCTGCTACATTCTGTTCTCTATGTCCTGTGTAGTTAGCTGCTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106576636 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038458.1 True 1731 mRNA 0.50 2 4459746 4461571

Neighbor

gene id symbol gene type direction distance location
LOC110516816 LOC107655592 coding upstream 18510 4384016 ~ 4441236 (+)
helb LOC106599032 coding upstream 876248 3565639 ~ 3583498 (+)
irak3 irak3 coding upstream 897154 3543652 ~ 3562592 (+)
LOC110516257 LOC106590998 coding upstream 1068152 3385456 ~ 3391594 (+)
LOC110499725 trhde coding upstream 1222174 2819887 ~ 3237572 (+)
LOC118942787 LOC106594295 coding downstream 390418 4851989 ~ 4852917 (+)
LOC118936571 rap1b coding downstream 536655 4998226 ~ 5111935 (+)
LOC110490690 nu107 coding downstream 658549 5120120 ~ 5173429 (+)
LOC118942832 LOC106576641 coding downstream 712089 5173660 ~ 5179939 (+)
LOC118942833 NA coding downstream 713924 5175495 ~ 5176684 (+)
G1702543 NA non-coding upstream 15506 4443593 ~ 4444240 (+)
G1702542 NA non-coding upstream 16992 4442252 ~ 4442754 (+)
G1702563 NA non-coding upstream 30219 4428788 ~ 4429527 (+)
G1702561 NA non-coding upstream 42391 4415795 ~ 4417355 (+)
G1702560 NA non-coding upstream 43992 4415162 ~ 4415754 (+)
G1702579 NA non-coding downstream 17285 4478856 ~ 4479378 (+)
G1702581 NA non-coding downstream 29117 4490688 ~ 4490921 (+)
G1702584 NA non-coding downstream 36829 4498400 ~ 4499016 (+)
G1702586 NA non-coding downstream 42408 4503979 ~ 4504212 (+)
G1702587 NA non-coding downstream 44971 4506542 ~ 4506886 (+)
G1702554 NA other upstream 64231 4394993 ~ 4395515 (+)
G1701654 NA other upstream 523709 3932787 ~ 3936037 (+)
G1701596 NA other upstream 683485 3774039 ~ 3776261 (+)
G1701265 NA other upstream 1610143 2844704 ~ 2849603 (+)
G1702793 NA other downstream 590876 5052447 ~ 5054464 (+)
LOC110516940 LOC106609861 other downstream 722903 5182911 ~ 5200193 (+)
G1702856 NA other downstream 792594 5254165 ~ 5254885 (+)
LOC110511233 LOC107655547 other downstream 1123960 5563222 ~ 5598052 (+)
G1703391 NA other downstream 1255628 5717199 ~ 5717701 (+)

Expression


Co-expression Network