LOC118942787 (LOC106594295)


Basic Information

Item Value
gene id LOC118942787
gene name LOC106594295
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4851989 ~ 4852917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038439.1
ACGGGGGAATAACCCCAATCATGACCCTTCAACCTCGTTTTATCCATCCAGTAATCTCGAAGTGGTAAACCCTCTCTAGAACGCAAAACCACAACAAACAAATCTAACCTCAGGACTTCGTAGATCAAAAAGAGAGATAACAGCAAGCTCAGCACCAATGCGTcttgtgctggccactccaagGAAATTTGCCGCAAACGAAATGCTGTTACACTTTTAAGCATCACGTTTCGACTGTGGGAATTTTTGAAAGGTGAAGTGATGGGTATATAACATGAAAGAACAGGTGCAGACTGTCAAACTACAGTTCTGattctctgctcttctcttcgCCGTTAATTACGACTCTAAACAATAAAACCGAAAAGATGCGCGCTGTGATTTTGGTAACGGTTGGTCTGCTGGCGCTGATTGGACACCTGGATGGACGCGCTCATGGCGAGAAACGACGCGACAGACCAACCTGTCTCCAACGGACGGTCTCTCCCAGACTGATCAAGGAATTACTCAACAAAACACAAACTCTCACTAACTCTTTACCAACGTTCCCCAGAAAAATATATGAAAGACTTCTGCCCAAAATCTGTACAACGTGTGCTAAGAAACAACTTGGCATCTGGGAAATCAACAAGATATTGGATGTCTATTCCAACGTGTTCAACCAGAAATCTTTGGAAGGTCTCTACCCCAAACACTTTGAGGATCTTCTAGCAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106594295

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038439.1 True 714 mRNA 0.44 3 4851989 4852917

Neighbor

gene id symbol gene type direction distance location
si:dkey-39a18.1 LOC106576636 coding upstream 376898 4451116 ~ 4475091 (+)
LOC118942831 LOC106576636 coding upstream 390418 4459746 ~ 4461571 (+)
LOC110516816 LOC107655592 coding upstream 410753 4384016 ~ 4441236 (+)
helb LOC106599032 coding upstream 1268491 3565639 ~ 3583498 (+)
irak3 irak3 coding upstream 1289397 3543652 ~ 3562592 (+)
LOC118936571 rap1b coding downstream 145309 4998226 ~ 5111935 (+)
LOC110490690 nu107 coding downstream 267203 5120120 ~ 5173429 (+)
LOC118942832 LOC106576641 coding downstream 320743 5173660 ~ 5179939 (+)
LOC118942833 NA coding downstream 322578 5175495 ~ 5176684 (+)
LOC110516940 LOC106609861 coding downstream 329994 5182911 ~ 5200193 (+)
G1702681 NA non-coding upstream 57873 4788024 ~ 4794116 (+)
G1702666 NA non-coding upstream 123753 4728002 ~ 4728236 (+)
G1702660 NA non-coding upstream 153275 4691596 ~ 4698714 (+)
G1702659 NA non-coding upstream 161799 4689839 ~ 4690190 (+)
G1702655 NA non-coding upstream 176962 4673970 ~ 4675027 (+)
G1702695 NA non-coding downstream 4246 4857163 ~ 4857886 (+)
G1702744 NA non-coding downstream 83389 4936306 ~ 4936524 (+)
G1702745 LOC106600154 non-coding downstream 83689 4936606 ~ 4943766 (+)
G1702761 NA non-coding downstream 118027 4970944 ~ 4971265 (+)
G1702762 NA non-coding downstream 118483 4971400 ~ 4971885 (+)
G1702554 NA other upstream 456474 4394993 ~ 4395515 (+)
G1701654 NA other upstream 915952 3932787 ~ 3936037 (+)
G1701596 NA other upstream 1075728 3774039 ~ 3776261 (+)
G1701265 NA other upstream 2002386 2844704 ~ 2849603 (+)
G1702793 NA other downstream 199530 5052447 ~ 5054464 (+)
G1702856 NA other downstream 401248 5254165 ~ 5254885 (+)
LOC110511233 LOC107655547 other downstream 732614 5563222 ~ 5598052 (+)
G1703391 NA other downstream 864282 5717199 ~ 5717701 (+)

Expression


Co-expression Network