LOC110490690 (nu107)



Basic Information


Item Value
gene id LOC110490690
gene name nu107
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5120120 ~ 5173429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036956650.1
ATGGACTGGGACCAGAATGAGTTGCTGTCGCCTATTGTACGAGATGCCGAAGTGACCAGAGCAGCACGCCGAAAGAGTTCAGTTCAGAAGAAGGCTCAATTCAACTTCCTTTCTCCTCGTGATGACAACCAAGGTAGTACCACCACACCTGCCCGTTCCCTGCCCTGCTACACACCTGGATCCCTCTTCAAACAGTCCTTCACCCCGAAGAGTGCTGCTAGGAACCCAGATGTGTCGGCCATCTTGGGGACAGGGCGCAGGACTCCTCGTTTCATCCATACACCGCGACCTCCCCTGGGCACTATGAGCATGAACCTGGATGACAGTGACTGGACCAACAGCCTGTACCCGTCTCCTCTGTCCGGCCTGGGACTGGGGGACACCAGCTTTACTGACGACATTAACATGTCCTCTGTAATGCTGAAGGAGGAGGATCCCGGAGAGGCTGCGTCAGTCAGTCTGTTCCCAGAGTTCCTCCAGTCCTATCTCAGACACTCCTCCACTGCTGTCTTTGACCTGCTGGGGGAATATGAAGCCATCTGTCAAGACAAGGTGGGCATGCTCCAGAGGCTGGTATCGAGGGCAGCTCCAGGGCAACAGAAGTCCTCTAAGACTGCTGGTATGAGATGGCTTTTACAGCAGGAGATGGTCACCTGGCGCCTCATCACTTCTCTATacagAGACAGGATCCAGTCAGAGCTGGAGGATGACATCATGATGGATGTGGCTGCTCCCGGTGTTAGTGAGAAGGTGGTGATGGAACAACTTTTCCAGAGAGATGCTGTAGTACGCCAGAGTCAGTTGGTTGTGGATTGGTTAGAGAGTATCGCCAAAGATGAAATCGGGGACTTCTCCGACAACATTGAATACTACGCCAAGTCTGTCTACTGGGAGAATACCCTTCATGCTCTGAAACTGAGGAGAAACACCTCCAGCACAGGCTTCAATGTTCCCCTGGTTACTGAGCTGgaCCCTGACGCCCCCATCAGACAGAGACGTCCCCTGGCAGACCTGGACAGAGAGGATGATGCCAGACTGCTGAAGTACCTCTTCACCCTCCTCAGAGCGGGCATGACAGACGAGgcCCAGAGGCTGTGTAAGCGCTGTGGCCAGGCATGGAGAGCTGCTACTCTGGAGGGATGGAAGCTGTACCACGACCCCAACATCAACGGAGGCGGGGCAGAGCTGCTACCGGTGGAGGGGAACCCTCAGCGCTGTGTGTGGAAGGTCTGCTGCTGGAGGATGGCTGATAATGAACACTTCAGCAGATATGAGAGAGCCATCTACGCTGTTCTGAGTGGGAACCTCAAACGGctGCTCCCAGTGTGTGAGTCGtgggaggacagtgtgtgggCCTACTTCAGGGTCCTGGTAGACTCTCTTGTGGAACAGGAGGTCCGGTCCTCAGGGATGGGCAGcgaggagctggaggagctgcCACGAGAATACCTGGAGGCCAACTGGACACTAGAGAAGGTGTTTGAGGAGCTGCTGGCAACAGAGTCAAAGAAAGTCCTGGAAGAGACGAAAGAACACTACCACATTATCCAGAAGTTAGTTATCCTGGGTGACCTGGACGGTCTGTTGGAGGAGTTCAGTAACTGGTTGACCAGGAGTCCTGCTCTGCCCCCTCACCTGCTGCGTTTCATGACACACCTGGTGTTGTTCTACCGCAGTCTGGGCATGCAGCTCAAGGAGGAGGTATCAGTGGATGTCCTGAAGGCCTACATCTCTCTGTTGATGAGGGAGAAGCACGTTGATCTGATAGCCTTCTATGTCAGTCACCTGCCGCCAGACCTGGCCACCGCACAGTACGCTCTCTTCCTGGAGGAGGTCACCGAGGCTGAGCAGAGACAACGCTGTCTGGAGCTGGCCAGGGAGGCAGGTTTGGACGTGGCAGCAGTCACTAAGATGGTGGTGGagaacatcagagagagagacactgaggagTTCGCTCATCATGACCTCACCCCTGCACTGGACACTGGCACCTCAGCgGAGGACCAGAGGAAGATCGATGTGATTGATTGGCTGGTGTTTGACCCCGCCCAGAGAGCTGAGGCCCTCAAACAGAGCAACGCCATCATGAGGAAGTTCCTGGCCTGTAAGAAACACCAGGCAGCTAAGGTGGTGTTCGGTAAGGTCCCCGAGGACTCCATGAGGGAGATCTACCGCCAGTGGGAGGAGCTAGGCCTGGACACTCCCCTTCCCGCGGAGGATGAGAATGCCATCAGGGAACACCTGTGTGTCCGTGCTTacctgGAAGCTCATGAGGCGTTTAATGAGTGGTTCCATCACATGAACTCCCCCCCTCAGAAGCCCAGCCTGCCGGCTCAGGCCAAGTTCACTGAGAAGGTGGCCTACGAGATGAAGGAGAACGAGTACCAGCTGGAACATGACAGCTGGACCGGCCGTCTGGGGGCTCTGACTGAAGACGTGAAGGAGAGGATCTACAACGTCCTGCTGTTTGTGGACGGGGGCTGGATGGTCGACGTCAGAGAGGATACGGAGGAGGACCCCGAGAGAGGCCACCAGATGGTGCTGCTTCGTAGACTCTGTCTGCCTATGATGTCCTTCCTGTTGCAGACAGTACTGCAGAGAACACAACGTCACCAGGAGAGTCTCAGACTGGCTGATATCATCGCCTCAGACCAACACCGCCTCTACGAGgTGTTCTCCAAGGATGAGCTGAGGAAGTTCCTTCAGAAGATGAGGGAGTCGTCTCTTCTCTTATTGGATAAGGGTCTAGACCCGCTGGGGTACGAGATCCAACCATAAATACACCCCACCCggacgttttgttttgttttttaatatcgtttttttgttgttgttttttgccaaGTTTAAGTAATGGAGTGAatgattttctgcattttgtaAACAATAAAAGTGACGTGTCTGAAA

Function


NR:

description
Nuclear pore complex protein Nup107

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0051292 nuclear pore complex assembly biological_process
GO:0005643 nuclear pore cellular_component

KEGG:

id description
K14301 NUP107, NUP84; nuclear pore complex protein Nup107

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036956650.1 True 2907 mRNA 0.54 26 5120120 5173429

Neighbor


gene id symbol gene type direction distance location
LOC118936571 rap1b coding upstream 8185 4998226 ~ 5111935 (+)
LOC118942787 LOC106594295 coding upstream 267203 4851989 ~ 4852917 (+)
si:dkey-39a18.1 LOC106576636 coding upstream 645029 4451116 ~ 4475091 (+)
LOC118942831 LOC106576636 coding upstream 658549 4459746 ~ 4461571 (+)
LOC110516816 LOC107655592 coding upstream 678884 4384016 ~ 4441236 (+)
LOC118942832 LOC106576641 coding downstream 231 5173660 ~ 5179939 (+)
LOC118942833 NA coding downstream 2066 5175495 ~ 5176684 (+)
LOC110516940 LOC106609861 coding downstream 9482 5182911 ~ 5200193 (+)
LOC118942835 LOC106576675 coding downstream 167105 5340534 ~ 5350434 (+)
LOC118942836 LOC106576675 coding downstream 228779 5402208 ~ 5416558 (+)
G1702813 NA non-coding upstream 263 5119644 ~ 5119857 (+)
G1702811 NA non-coding upstream 1556 5118136 ~ 5118564 (+)
G1702807 NA non-coding upstream 24461 5094974 ~ 5095659 (+)
G1702805 NA non-coding upstream 28578 5091058 ~ 5091542 (+)
G1702797 NA non-coding upstream 56724 5061603 ~ 5063396 (+)
G1702825 NA non-coding downstream 28644 5202073 ~ 5202278 (+)
G1702833 NA non-coding downstream 44412 5217841 ~ 5218298 (+)
G1702847 NA non-coding downstream 67566 5240995 ~ 5241664 (+)
G1702859 NA non-coding downstream 85804 5259233 ~ 5259935 (+)
G1702860 NA non-coding downstream 94415 5267844 ~ 5268219 (+)
G1702793 NA other upstream 65656 5052447 ~ 5054464 (+)
G1702554 NA other upstream 724605 4394993 ~ 4395515 (+)
G1701654 NA other upstream 1184083 3932787 ~ 3936037 (+)
G1701596 NA other upstream 1343859 3774039 ~ 3776261 (+)
G1702856 NA other downstream 80736 5254165 ~ 5254885 (+)
LOC110511233 LOC107655547 other downstream 412102 5563222 ~ 5598052 (+)
G1703391 NA other downstream 543770 5717199 ~ 5717701 (+)
G1703427 LOC106590880 other downstream 809916 5983345 ~ 5994810 (+)

Expression



Co-expression Network