LOC118942832 (LOC106576641)


Basic Information

Item Value
gene id LOC118942832
gene name LOC106576641
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5173660 ~ 5179939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956651.1
CTGCTCCCATTAAGTTTGCAACCAGGCTCTTTTTTTCCTGTATGATCCACATGCGATGGTATGAAAAGTATGAAAGTCGTACAACGCTAACTGTACATGCAGGACTGAAATACTCTAGAATGTAATGCCACTGTATAGGCCCTGTAATTTTTTACGAAAGGGGATGTATGCCCGATCAGTCGGTAGTGTCGAAGCCTGGAGAGACCCCCGCAACTTTTCCTGATGTGTGGCAGAGGGTAGACATTTTTTGGGGGTTTACATTAGCTACCTAGCTTCATACTATACAGTACTACTGAAACCTGTATGTACATTTTACAGGACAGTTCTCAAGACGACCATGGCTAACCGACTGTCAGACCTTTTCTCGAACAGCCGTCTCGTCATTGGATTATTGGCCAATTTGCTGTCATCGATATGCATCGTTTTCATCAACAAATGGATCTATGTTCACTATGGCTTTCCAAACATGACTCTAACTCTGATTCATTTCGTTGTGACATGGCTTGGACTATGGGTATGCCAGAAGATGGACATATTTGCGCCAAAGAGTCTCCAACCCACCAAAATTATCTGGCTCGCTCTAAGCTTCTGTGGCTTCGTGGCTTTCACCAATCTGTCTTTACAAAACAACACCATCGGTACCTACCAGCTGGCCAAAGCGATGACAACTCCTGTGATCATTGTCATACAGACAATGTACTACAAGAAGACATTCTCCACCAAGATCAAGTTGActttggTGCCCATAACGTTAGGTGTGATCCTCAACTCCTACTATGATGTGAGATTCAACCTCCTGGGGATGGTCTTTGCCACACTAGGAGTGTTCGTCACCTCCCTCTATCAGGTGTGGGTAGGTGTGAAACAGCATGAGCTCCAGGTTAACTCCAtgcagctactctactaccaggCCCCCATGTCCtctgccttcctcctctccctcgtgCCCTTCTTCGAACCTCTCTCTGGGGAGGGGGGCATCTTCGGACCCTGGTCCTTCCCAGCACTgGCCATGGTGATGCTATCTGGCCTCATAGCCTTCCTAGTCAACCTGTCAATCTACTGGATCATAGGGAACACCTCTGCTGTCACCTACAACATGTTTGGCCACTTCAAGTTCTGCATCACCCTGTTGGGGGGCTATGTTCTCTTTCAGGACCCCCTATCTCTAAACCAGGGCCTGGGCATCCTCTGTACCCTCACTGGCATTCTCTCCTACACCCACTTCAAGCTGGCAGAGCAGGAGGAGGGCAAAAGCAAGCTGGTCCAGAGGCCATGATAGGCCCACCGGAGTGCCAATCCATAGAGGCTGCTACTCTCATTGGTTGCTTGACAACTCACTGGTTCCCTAGGACTGTTTGAGGGAAGGGCCATGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAATTCTATAGTTGGAATGTGATTGTTGAGTGAAAGGGGAACTGGCCAAACAGTGAGATAAAGGGAGATAGTTCTGGCAGGGAACACTAATGATGACGATGATAATACACTGTTAAAGAAGTGGAATGTATATTGTATTGGAAGATGTGGGAGCTCAGCAAGCCTAGTATTAACATAGTTTTTGCATTACTCAAGATGCTGTCTTATATTCCAGTATTTTTGCCGGTACGATTAAAGAGAGGACAACTTGCTCTTAACAATGTCCAAATGCTGAAGATACTTTTGCATTATTGAATGATTCTTATTTTTTTTCATACTGTGATCTTcaataaattgtattttattgat
>XR_005038468.1
CTGCTCCCATTAAGTTTGCAACCAGGCTCTTTTTTTCCTGTATGATCCACATGCGATGGTATGAAAAGTATGAAAGTCGTACAACGCTAACTGTACATGCAGGACTGAAATACTCTAGAATGTAATGCCACTGTATAGGCCCTGTAATTTTTTACGAAAGGGGATGTATGCCCGATCAGTCGGTAGTGTCGAAGCCTGGAGAGACCCCCGCAACTTTTCCTGATGTGTGGCAGAGGGTAGACATTTTTTGGGGGTTTACATTAGCTACCTAGCTTCATACTATACAGTACTACTGAAACCTGTATGTACATTTTACAGGACAGTTCTCAAGACGACCATGGCTAACCGACTGTCAGACCTTTTCTCGAACAGCCGTCTCGTCATTGGATTATTGGCCAATTTGCTGTCATCGATATGCATCGTTTTCATCAACAAATGGATCTATGTTCACTATGGCTTTCCAAACATGACTCTAACTCTGATTCATTTCGTTGTGACATGGCTTGGACTATGGGTATGCCAGAAGATGGACATATTTGCGCCAAAGAGTCTCCAACCCACCAAAATTATCTGGCTCGCTCTAAGCTTCTGTGGCTTCGTGGCTTTCACCAATCTGTCTTTACAAAACAACACCATCGGTACCTACCAGCTGGCCAAAGCGATGACAACTCCTGTGATCATTGTCATACAGACAATGTACTACAAGAAGACATTCTCCACCAAGATCAAGTTGActttggTGCCCATAACGTTAGGTGTGATCCTCAACTCCTACTATGATGTGAGATTCAACCTCCTGGGGATGGTCTTTGCCACACTAGGAGTGTTCGTCACCTCCCTCTATCAGGTGTGGGTAGGTGTGAAACAGCATGAGCTCCAGGTTAACTCCAtgcagctactctactaccaggCCCCCATGTCCtctgccttcctcctctccctcgtgCCCTTCTTCGAACCTCTCTCTGGGGAGGGGGGCATCTTCGGACCCTGGTCCTTCCCAGCACTgGCCATGGTGATGCTATCTGGCCTCATAGCCTTCCTAGTCAACCTGTCAATCTACTGGATCATAGGGAACACCTCTGCTGTCACCTACAACATGTTTGGCCACTTCAAGTTCTGCATCACCCTGTTGGGGGGCTATGTTCTCTTTCAGGACCCCCTATCTCTAAACCAGGGCCTGGGCATCCTCTGTACCCTCACTGGCATTCTCTCCTACACCCACTTCAAGCTGGCAGAGCAGGAGGAGGGCAAAAGCAAGCTGGTCCAGAGGCCATGATAGGCCCACCGGAGTGCCAATCCATAGAGGCTGCTACTCTCATTGGTTGCTTGACAACTCACTGGTTCCCTAGGACTGTTTGAGGGAAGGGCCATGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAATTCTATAGTTGGAATGTGATTGTTGAGTGAAAGGGGAACTGGCCAAACAGTGAGATAAAGGGAGATAGTTCTGGCAGGGAACACTAATGATGACGATGATAATACACTGTTAAAGAAGTGGAATGTATATTGTATTGGAAGATGTGGGAGCTCAGCAAGCCTAGTATTAACATAGTTTTTGCATTACTCAAGATGCTGTCTTATATTCCAGTATTTTTGCCGGTACGATTAAAGAGAGGACAACTTGCTCTTAACAATGTCCAAATGCTGAAGATACTTTTGCATTATTGAATGATTCTTATTTTTTTTCATACTGTGATCTTcaataaattgtattttattgat
>XR_005038469.1
CTGCTCCCATTAAGTTTGCAACCAGGCTCTTTTTTTCCTGTATGATCCACATGCGATGGTATGAAAAGTATGAAAGTCGTACAACGCTAACTGTACATGCAGGACTGAAATACTCTAGAATGTAATGCCACTGTATAGGCCCTGTAATTTTTTACGAAAGGGGATGTATGCCCGATCAGTCGGTAGTGTCGAAGCCTGGAGAGACCCCCGCAACTTTTCCTGATGTGTGGCAGAGGGTAGACATTTTTTGGGGGTTTACATTAGCTACCTAGCTTCATACTATACAGTACTACTGAAACCTGTATGTACATTTTACAGGACAGTTCTCAAGACGACCATGGCTAACCGACTGTCAGACCTTTTCTCGAACAGCCGTCTCGTCATTGGATTATTGGCCAATTTGCTGTCATCGATATGCATCGTTTTCATCAACAAATGGATCTATGTTCACTATGGCTTTCCAAACATGACTCTAACTCTGATTCATTTCGTTGTGACATGGCTTGGACTATGGGTATGCCAGAAGATGGACATATTTGCGCCAAAGAGTCTCCAACCCACCAAAATTATCTGGCTCGCTCTAAGCTTCTGTGGCTTCGTGGCTTTCACCAATCTGTCTTTACAAAACAACACCATCGGTACCTACCAGCTGGCCAAAGCGATGACAACTCCTGTGATCATTGTCATACAGACAATGTACTACAAGAAGACATTCTCCACCAAGATCAAGTTGActttggTGCCCATAACGTTAGGTGTGATCCTCAACTCCTACTATGATGTGAGATTCAACCTCCTGGGGATGGTCTTTGCCACACTAGGAGTGTTCGTCACCTCCCTCTATCAGGTGTGGGTAGGTGTGAAACAGCATGAGCTCCAGGTTAACTCCAtgcagctactctactaccaggCCCCCATGTCCtctgccttcctcctctccctcgtgCCCTTCTTCGAACCTCTCTCTGGGGAGGGGGGCATCTTCGGACCCTGGTCCTTCCCAGCACTgGCCATGGTGATGCTATCTGGCCTCATAGCCTTCCTAGTCAACCTGTCAATCTACTGGATCATAGGGAACACCTCTGCTGTCACCTACAACATGTTTGGCCACTTCAAGTTCTGCATCACCCTGTTGGGGGGCTATGTTCTCTTTCAGGACCCCCTATCTCTAAACCAGGGCCTGGGCATCCTCTGTACCCTCACTGGCATTCTCTCCTACACCCACTTCAAGCTGGCAGAGCAGGAGGAGGGCAAAAGCAAGCTGGTCCAGAGGCCATGATAGGCCCACCGGAGTGCCAATCCATAGAGGCTGCTACTCTCATTGGTTGCTTGACAACTCACTGGTTCCCTAGGACTGTTTGAGGGAAGGGCCATGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAGGTTGGAATCATAGAACTAGAATTCTATAGTTGGAATGTGATTGTTGAGTGAAAGGGGAACTGGCCAAACAGTGAGATAAAGGGAGATAGTTCTGGCAGGGAACACTAATGATGACGATGATAATACACTGTTAAAGAAGTGGAATGTATATTGTATTGGAAGATGTGGGAGCTCAGCAAGCCTAGTATTAACATAGTTTTTGCATTACTCAAGATGCTGTCTTATATTCCAGTATTTTTGCCGGTACGATTAAAGAGAGGACAACTTGCTCTTAACAATGTCCAAATGCTGAAGATACTTTTGCATTATTGAATGATTCTTATTTTTTTTCATACTGTGATCTTcaataaattgtattttattgat

Function

NR:

description
solute carrier family 35 member E3

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15285 SLC35E3; solute carrier family 35, member E3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956651.1 False 1866 mRNA 0.45 5 5173660 5179939
XR_005038468.1 False 1824 mRNA 0.45 6 5173660 5179939
XR_005038469.1 True 1824 mRNA 0.45 6 5173660 5179939

Neighbor

gene id symbol gene type direction distance location
LOC110490690 nu107 coding upstream 231 5120120 ~ 5173429 (+)
LOC118936571 rap1b coding upstream 61725 4998226 ~ 5111935 (+)
LOC118942787 LOC106594295 coding upstream 320743 4851989 ~ 4852917 (+)
si:dkey-39a18.1 LOC106576636 coding upstream 698569 4451116 ~ 4475091 (+)
LOC118942831 LOC106576636 coding upstream 712089 4459746 ~ 4461571 (+)
LOC110516940 LOC106609861 coding downstream 2972 5182911 ~ 5200193 (+)
LOC118942835 LOC106576675 coding downstream 160595 5340534 ~ 5350434 (+)
LOC118942836 LOC106576675 coding downstream 222269 5402208 ~ 5416558 (+)
LOC110491886 tmbim4 coding downstream 277600 5457539 ~ 5472994 (+)
LOC110511233 LOC107655547 coding downstream 383283 5563222 ~ 5598052 (+)
G1702821 NA non-coding upstream 1543 5171514 ~ 5172117 (+)
G1702740 NA non-coding upstream 3490 5155866 ~ 5170170 (+)
G1702735 NA non-coding upstream 5840 5143644 ~ 5167820 (+)
G1702813 NA non-coding upstream 53803 5119644 ~ 5119857 (+)
G1702811 NA non-coding upstream 55096 5118136 ~ 5118564 (+)
G1702825 NA non-coding downstream 22134 5202073 ~ 5202278 (+)
G1702833 NA non-coding downstream 37902 5217841 ~ 5218298 (+)
G1702847 NA non-coding downstream 61056 5240995 ~ 5241664 (+)
G1702859 NA non-coding downstream 79294 5259233 ~ 5259935 (+)
G1702860 NA non-coding downstream 87905 5267844 ~ 5268219 (+)
G1702793 NA other upstream 119196 5052447 ~ 5054464 (+)
LOC110516816 LOC107655592 other upstream 772679 4384016 ~ 4441236 (+)
G1702554 NA other upstream 778145 4394993 ~ 4395515 (+)
G1701654 NA other upstream 1237623 3932787 ~ 3936037 (+)
G1701596 NA other upstream 1397399 3774039 ~ 3776261 (+)
G1702856 NA other downstream 74226 5254165 ~ 5254885 (+)
G1703391 NA other downstream 537260 5717199 ~ 5717701 (+)
G1703427 LOC106590880 other downstream 803406 5983345 ~ 5994810 (+)

Expression


Co-expression Network