LOC118942834 (LOC106576655)


Basic Information

Item Value
gene id LOC118942834
gene name LOC106576655
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5236240 ~ 5313033 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956667.1
AAAACTTGGCCGTGTGTGAATATAGTGATAATGCCATACAGGGCGGTGTGCAGGCAGGCAGGGGACCCGACGGTGTAATGTGGTCGGGGGGAGGGTTGATCTGTCGACTAAGAACCATTCAGGCGATTGGGAACTTTAAACAGTTGTTATGAATGCGGTCGGACGGGCGAGGGTGACAGCGGTGTGACTTCAAGAGACGTCTTCACAGAATAAGTTGTCCGCACACAGCGAGCTGCAGGAAATATACATTTAGTAATAAGGTTGTCACTGTCCCGTACGAGACGATGTTTCTTTTTGCGCTCTGCCTATACCTCGGGAAGTTGGTGTCGTCCGGTGTCAGTTTGGAGTTCCGTTATCACAACACCGTGGAGGTGGAGAGATACCTGCGGGACGTTAACAACACCTTCGACTTCACACACCTGCACAGTATTGGAAAGTCTGTTGAAGGGAGAGACCTCTGGGTGCTCATTCTGGGAAAGAATCCGGCTGAGCACCAGATGGGAATTCCTGAATTCAAATATGTTGGGAATATGCATGGAAATGAGGTGGTGGGCAGAGTTCTCCTGCTCCAGCTGATCGATCACCTGACCCGTGGTTACCTTAGCGACCCGCTGGTGACCCGCCTCCTGAACAGCACCCGCGTCCACATCCTGGTTTCCATGAACCCAGACGGCTTCGAGTCCTCCAGCAGAGACTGCATGTACTCCCAGGGGAGGTTCAATAAGAACGGCATCGATCTGAACAGGAACTTCCCAGATGCCTTCTCTAAGAAGGAGAGtggaatgagagagatggaggtgagaGCCATTATGGACTGGCTGAAGACTGAGAGCTTCGTCCTGTCGGCCAACCTGCACGGTGGGGCTGTGGTGGCCAGCTACCCCTACGACAACAGCAATGGAGGTAGTGAGCTGCAGAGTGGATCCAGTGTTGCCCCCGACAACGACGTGTTGATCCAGCTGGCTAAGACCTACTCCTACACCCACAGCCAGATGCACAAGGGAGACCACTGTTACGACTCCAAGGACTTTAAGGAGGGCATCACCAACGGCTACTACTGGTACCCTCTACCAGGAGGGATGCAGGACTATAACTACGTGTGGGGCCAGTGTCTAGAGATCACCTTGGAGCTGTCCTGTTGTAAATACCCTCCAGAGAGTGATCTGCCTGGGCTCTGGGACGCCAACCGGGCCGCGCTGCTGGCATACATGCAACAGGTCCATCTGGgtGTGAAAGGGCAGGTGTTGGACGCGGAGGGAAACCCATTACAGAATGctctggtggaggtggaggggagacagAACCTCTGTCCCTTCAGAACCGACCGCCATGGAGAATACTACAGACTGCTGCTGCCAGGCAACTACACCTTTAGGGTGACGTTCCCGGGCCACCAGGTGTTGACGGAGACGTTGACGGTCCCGTACGGCCCCGACTCATTCTCGGCCCTCGTCCACAACTTCCAGCTGCAGAGGTCCGCAGCCGCCACCCCTGGCCCCAGCCGCCCCACCCAGTCCTGCACCCCACCCCAGGTCTGGAGGCCCCTGGGTGGCCACTCTCCCAGCCTGGGCCCCTCGGGCGTCACCATCCTCCTGGTTCTCCTGGTTCTCCGGGATACCATGTTACTGTGACCGAGAGACGGGccacgtcccaaatggaaccttattaaagtagtgcactatataggggataggatgccatttgggacgtatccatggagacagacagactgagatggGATCTCCCAGTCCAGAGacattctcttttttttcttcttcagtaTTTTTGTATAAACAAAGAAAATCCTATATATATTTTCTTGTAACACTTCTCATTGCTCTACCTTGCACAAACACGTGAGCCATTttgtgtttttaaaaaatgtaatgttttgtATTGATGCTTTtttagtttttaaaaaaaaatattgtgctGAAAGAAAGCAATTACTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAAGCTGAGAAGAAGAGACTAAAGTCAAGGtgtaagggagggaggggtgttgaG
>XM_036956668.1
GTATAAAAACTTGGCCGTGTGTGAATATAGTGATAATGCCATACAGGGCGGTGTGCAGGCAGGCAGGGGACCCGACGGTGTAATGTGGTCGGGGGGAGGGTTGATCTGTCGACTAAGAACCATTCAGGCGATTGGGAACTTTAAACAGTTGTTATGAATGCGGTCGGACGGGCGAGGGTGACAGCGGTGTGACTTCAAGAGACGTCTTCACAGAATAAGTTGTCCGCACACAGCGAGCTGCAGGAAATATACATTTAGTAATAAGGTTGTCACTGTCCCGTACGAGACGATGTTTCTTTTTGCGCTCTGCCTATACCTCGGGAAGTTGGTGTCGTCCGGTGTCAGTTTGGAGTTCCGTTATCACAACACCGTGGAGGTGGAGAGATACCTGCGGGACGTTAACAACACCTTCGACTTCACACACCTGCACAGTATTGGAAAGTCTGTTGAAGGGAGAGACCTCTGGGTGCTCATTCTGGGAAAGAATCCGGCTGAGCACCAGATGGGAATTCCTGAATTCAAATATGTTGGGAATATGCATGGAAATGAGGTGGTGGGCAGAGTTCTCCTGCTCCAGCTGATCGATCACCTGACCCGTGGTTACCTTAGCGACCCGCTGGTGACCCGCCTCCTGAACAGCACCCGCGTCCACATCCTGGTTTCCATGAACCCAGACGGCTTCGAGTCCTCCAGCAGAGACTGCATGTACTCCCAGGGGAGGTTCAATAAGAACGGCATCGATCTGAACAGGAACTTCCCAGATGCCTTCTCTAAGAAGGAGAGtggaatgagagagatggaggtgagaGCCATTATGGACTGGCTGAAGACTGAGAGCTTCGTCCTGTCGGCCAACCTGCACGGTGGGGCTGTGGTGGCCAGCTACCCCTACGACAACAGCAATGGAGGTAGTGAGCTGCAGAGTGGATCCAGTGTTGCCCCCGACAACGACGTGTTGATCCAGCTGGCTAAGACCTACTCCTACACCCACAGCCAGATGCACAAGGGAGACCACTGTTACGACTCCAAGGACTTTAAGGAGGGCATCACCAACGGCTACTACTGGTACCCTCTACCAGgtGTGAAAGGGCAGGTGTTGGACGCGGAGGGAAACCCATTACAGAATGctctggtggaggtggaggggagacagAACCTCTGTCCCTTCAGAACCGACCGCCATGGAGAATACTACAGACTGCTGCTGCCAGGCAACTACACCTTTAGGGTGACGTTCCCGGGCCACCAGGTGTTGACGGAGACGTTGACGGTCCCGTACGGCCCCGACTCATTCTCGGCCCTCGTCCACAACTTCCAGCTGCAGAGGTCCGCAGCCGCCACCCCTGGCCCCAGCCGCCCCACCCAGTCCTGCACCCCACCCCAGGTCTGGAGGCCCCTGGGTGGCCACTCTCCCAGCCTGGGCCCCTCGGGCGTCACCATCCTCCTGGTTCTCCTGGTTCTCCGGGATACCATGTTACTGTGACCGAGAGACGGGccacgtcccaaatggaaccttattaaagtagtgcactatataggggataggatgccatttgggacgtatccatggagacagacagactgagatggGATCTCCCAGTCCAGAGacattctcttttttttcttcttcagtaTTTTTGTATAAACAAAGAAAATCCTATATATATTTTCTTGTAACACTTCTCATTGCTCTACCTTGCACAAACACGTGAGCCATTttgtgtttttaaaaaatgtaatgttttgtATTGATGCTTTtttagtttttaaaaaaaaatattgtgctGAAAGAAAGCAATTACTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAAGCTGAGAAGAAGAGACTAAAGTCAAGGtgtaagggagggaggggtgttgaG
>TU1949704
AGGCAGGGGACCCGACGGTGTAATGTGGTCGGGGGGAGGGTTGATCTGTCGACTAAGAACCATTCAGGCGATTGGGAACTTTAAACAGTTGTTATGAATGCGGTCGGACGGGCGAGGGTGACAGCGGTGTGACTTCAAGAGACGTCTTCACAGAATAAGTTGTCCGCACACAGCGAGCTGCAGGAAATATACATTTAGTAATAAGGTTGTCACTGTCCCGTACGAGACGATGTTTCTTTTTGCGCTCTGCCTATACCTCGGGAAGTTGGTGTCGTCCGGTGTCAGTTTGGAGTTCCGTTATCACAACACCGTGGAGGTGGAGAGATACCTGCGGGACGTTAACAACACCTTCGACTTCACACACCTGCACAGTATTGGAAAGTCTGTTGAAGGTGGTGGGCAGAGTTCTCCTGCTCCAGCTGATCGATCACCTGACCCGTGGTTACCTTAGCGACCCGCTGGTGACCCGCCTCCTGAACAGCACCCGCGTCCACATCCTGGTTTCCATGAACCCAGACGGCTTCGAGTCCTCCAGCAGAGACTGCATGTACTCCCAGGGGAGGTTCAATAAGAACGGCATCGATCTGAACAGGAACTTCCCAGATGCCTTCTCTAAGAAGGAGAGtggaatgagagagatggaggtgagaGCCATTATGGACTGGCTGAAGACTGAGAGCTTCGTCCTGTCGGCCAACCTGCACGGTGGGGCTGTGGTGGCCAGCTACCCCTACGACAACAGCAATGGAGGTAGTGAGCTGCAGAGTGGATCCAGTGTTGCCCCCGACAACGACGTGTTGATCCAGCTGGCTAAGACCTACTCCTACACCCACAGCCAGATGCACAAGGGAGACCACTGTTACGACTCCAAGGACTTTAAGGAGGGCATCACCAACGGCTACTACTGGTACCCTCTACCAGgtGTGAAAGGGCAGGTGTTGGACGCGGAGGGAAACCCATTACAGAATGctctggtggaggtggaggggagacagAACCTCTGTCCCTTCAGAACCGACCGCCATGGAGAATACTACAGACTGCTGCTGCCAGGCAACTACACCTTTAGGGTGACGTTCCCGGGCCACCAGGTGTTGACGGAGACGTTGACGGTCCCGTACGGCCCCGACTCATTCTCGGCCCTCGTCCACAACTTCCAGCTGCAGAGGTCCGCAGCCGCCACCCCTGGCCCCAGCCGCCCCACC

Function

NR:

description
PREDICTED: carboxypeptidase M isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956667.1 False 2679 mRNA 0.54 9 5236240 5313028
XM_036956668.1 False 2531 mRNA 0.53 8 5236240 5313033
TU1949704 True 1205 TUCP 0.56 7 5237408 5312973

Neighbor

gene id symbol gene type direction distance location
LOC118942990 NA coding downstream 8153 5226069 ~ 5228087 (-)
LOC110518655 LOC106592876 coding downstream 11904 5202814 ~ 5224336 (-)
LOC118942989 NA coding downstream 175922 5052618 ~ 5060318 (-)
LOC118936570 mdm1 coding downstream 265849 4932214 ~ 4970391 (-)
ifng ifngamma1 coding downstream 458159 4756753 ~ 4778081 (-)
LOC118942837 b2mg coding upstream 107841 5420336 ~ 5426626 (-)
LOC110491894 b2m coding upstream 122243 5435276 ~ 5452253 (-)
LOC118942838 NA coding upstream 130926 5443959 ~ 5449928 (-)
LOC110491889 b2m coding upstream 139937 5452948 ~ 5456355 (-)
vhll NA coding upstream 165412 5478445 ~ 5480899 (-)
G1703191 NA non-coding downstream 29370 5206018 ~ 5206870 (-)
G1703190 NA non-coding downstream 34183 5200387 ~ 5202057 (-)
G1703185 NA non-coding downstream 55167 5180674 ~ 5181073 (-)
G1703184 NA non-coding downstream 56328 5179227 ~ 5179912 (-)
G1703292 NA non-coding upstream 1431 5314464 ~ 5314770 (-)
G1703294 NA non-coding upstream 3100 5316133 ~ 5317213 (-)
G1703302 NA non-coding upstream 10558 5323591 ~ 5323837 (-)
G1703305 NA non-coding upstream 16216 5329249 ~ 5329565 (-)
G1703306 NA non-coding upstream 22329 5335362 ~ 5335759 (-)
G1703200 NA other downstream 1015 5232635 ~ 5235225 (-)
G1703085 NA other downstream 288829 4946598 ~ 4947411 (-)
G1702914 NA other downstream 791321 4442249 ~ 4444919 (-)
G1703323 NA other upstream 116435 5429468 ~ 5430889 (-)
G1703658 NA other upstream 586309 5899342 ~ 5899781 (-)
LOC118942843 NA other upstream 637001 5950034 ~ 5963423 (-)

Expression


Co-expression Network