LOC118942835 (LOC106576675)


Basic Information

Item Value
gene id LOC118942835
gene name LOC106576675
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5340534 ~ 5350434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956670.1
CTGATTCATTCCGGGTATTACTTGAGTCCTCCCAGTGATTTCCTATTGAAATGCATTTATACCTATTGTTGCCAGTAGTCGGAGGCAAATAGTACGTTTTGTCTTCACATCTGGTCACCTTTTTTTCAATGAACTGCTGTAACTTCCTCATTCTTCCGAGAGAAGCCTAACGGGACAGACGCAAACGTTATCCTGCCGCATCTTGTCTCCTGTTTTACAGGTCATTTCACAGGTCCAATGGCAGCCATGGTGAAGTCTGAGCCGCTTGAGAGCAATATTTATCCAGAAACGGAACACTGTCACTCATTCTCCTTCAGTTGCCCAACTCATAAAATACCCAAAGAGGAAATCACCTGCACCAAACCTGGAACAATATTGAGAGCTCTTGAAACTAATGACACATTCAAGGAGTTAAACCAAATGGACAGGAAGACACTGAAAGGGAAAGACATTGTCATCAAGAGTTGTAAGGGGTACATAGTGAAGCACTTTCCATGTTGGCTGATCAAAGAGGATGACCGTCTCACTATTGAGATGGTCACACATGCCACAGATGAACCTGCAGGGGTCACGGATCAGGAAACAGACAATTATGTAACTTTCTCTGTTGAGACAACGGGAGGGAAAAACAGCAAATCAAAACAAATACTTGGAAACAAACAACTGGAGTCCTACGGACCTCTATGTGTCTATGCAAAACAGAAGGAGGAAGTGAAGAAGGCTCTACGAAATGATGGACGCTTCTCAAACATTGTGTTTGAACAGAGATGCCAGCTCTCTGAGCGATCAACAGGAAGCAAGGTTTCAATGGGGCAAATTGCAAAAAAACTTAATGTTAGAAACTTTGAAATCTGTCTGACAAAGCATAAGGAGAAAACGGCAATTAAGATGGAAACATCTGACTCcacaataaaaacaaaaaacattgtaaCCACGCAAACATCTCTGTTCAACCCAAGCCCTGactctgaaggagacgacacacAGATGTCTCCATCGACGCTAACAACACAAACATCAGATGTAGGGGAGTCCTCTTCGAGAAGAAAGCAGAAACGAAAATGCATTCCCGTGCCAAAACATGGTGAAATATTGACGATCCTTCGCAACCAGTTTGAAGATCTGGTGAAGCAGATGGAAAGTAGGAGGGAGGACAGCCAACAGAAGACATTTCCTGAAGAGTTGGATCTCATGAAGCAGGAATTTGGGAAAATCAGACAAAAGTTCTCTGAGGTTCACAGAGTGAAGAAATTGATTAAACTTGGTGCCTCCGTTTGTCAGGTGATTGTTGAAGGTGTTCAGGGTGTTCTGGGGACAGGCTTCGTGCTGTTTGACAACTACATCCTAACAAATGCACATTTGTTTGGTGAAAATGTAAGAGAAAACATACAGTTGTTAGTCGATGTATCTGTAAAGTTCAACTATGAAAATCCAAATGGATCCGATGTGAACGTATTCAGAGCAAAAACCCTGCTGATCGACTTTCAATATGGACATCAGGGAAAACATCATATAGACTATGCCATACTGGAGCTGGATCCTCAGAATAAGAAACAACGGCAAAAGGTTCCTCCTGGTCTCCTCCGTGAATATGGCCCAGTCCCAGCATGCGGTGGGGCCTGCCTCATTGGACACCCAGGTGGACTGGTGAAACAAATGGAACCCACCTCCATCATTGGCAGTGAGATAAGAGAGGAGGCTGCGAATAAATATAAACGGGAAAAGGGACATGCAATCTTCACAATAAACGATGCCCTTGAAAAAGAGAAAAAGCGTTACGATGAAGTGACGCAGGAGAACAAGGACGACTTTGTGACCTACAACACCTCCTTCTTCCATGGATCTTCTGGCTCGCCAGTCTTCGATGACCTTGGTCGAGTGTTTGGCATACATACTGGTGGCTTTGAATATGAGGATAAGCGCACTCAGAGCAAACAGAGTGTGTTAGAGTACGCCCTCCCTCTGCTCCCCATATTACGGAACTTTGTCATCCGTTTGGAGGAGGACAACAATCAGGCAGATTTGAAAAGAGTTAAGGAAGAGGTACAGGAAAACGTCTTCCTGAATGAGGCTCTTTTCACGACAGATGGTGATGAGCCTATGGATATGTCGTAGGAGATTGTTGCAAATACAGCTAATTCAATGCCACCCAGTGGTTGTCCTGGGAACAACACAACAATGCCACCCAGTGGTTGTCCTGGGAACAACACAACAATGCCACCCAGTTGTTGTCCTGGGAACAACACAACAATGCCATCCAGTGGTTGTCCTGGGAACAACACAACAATGCCACCCAGTGGGTGTCTTTGCAAATACTGTAACGTTAGTATTTATGTTCAACCATTCCACTAGTGCCTTTTGGGCATTTTTAGGATATTGATAGATTACTTGTCCGAGGTCAAAGgtacatgtttaaaaaaaataaaatgttttgttttatctCATGCACCTTTGTTTTCTGTAATTCTCATCACTGGTTCCTTATGATGTATTCTGCATTTCTGTGAAGCATGGTTTCTTTTGAAAAATATACTTTGGTCTCAGTGGGCCTTCTCtgcaaaaataaacatttcataGATTAAGACATCTACCTAGATCAGATTGCAACTATCTAAATATTGTTTTATTGTGTTCTACATTTTGATTACTTGTCTTTTTCTTTAACTTACTTCATGGATCCATCGTTTTGCTTTCTTGGTTTGACATGTAAAGGTTAATCATGAGTACAATGTGTTAACTGTAATTACATTGGAATACTGTATGCATCATTTAGACATTGTTTTCATTTCATGAGTTGTAACAATCATGCATAAAACTAGTGACAGACTGACTAATCAATAAATGTGTTGACAATTA
>XM_036956669.1
TGATTCATTCCGGGTATTACTTGAGTCCTCCCAGTGATTTCCTATTGAAATGCATTTATACCTATTGTTGCCAGTAGTCGGAGGCAAATAGTACGTTTTGTCTTCACATCTGGTCACCTTTTTTTCAATGAACTGCTGTAACTTCCTCATTCTTCCGAGAGAAGCCTAACGGGACAGACGCAAACGTTATCCTGCCGCATCTTGTCTCCTGTTTTACAGGTCATTTCACAGGTCCAATGGCAGCCATGGTGAAGTCTGAGCCGCTTGAGAGCAATATTTATCCAGAAACGGAACACTGTCACTCATTCTCCTTCAGTTGCCCAACTCATAAAATACCCAAAGAGGAAATCACCTGCACCAAACCTGGAACAATATTGAGAGCTCTTGAAACTAATGACACATTCAAGGAGTTAAACCAAATGGACAGGAAGACACTGAAAGGGAAAGACATTGTCATCAAGAGTTGTAAGGGGTACATAGTGAAGCACTTTCCATGTTGGCTGATCAAAGAGGATGACCGTCTCACTATTGAGATGGTCACACATGCCACAGATGAACCTGCAGGGGTCACGGATCAGGAAACAGACAATTATGTAACTTTCTCTGTTGAGACAACGGGAGGGAAAAACAGCAAATCAAAACAAATACTTGGAAACAAACAACTGGAGTCCTACGGACCTCTATGTGTCTATGCAAAACAGAAGGAGGAAGTGAAGAAGGCTCTACGAAATGATGGACGCTTCTCAAACATTGTGTTTGAACAGAGATGCCAGCTCTCTGAGCGATCAACAGGAAGCAAGGTTTCAATGGGGCAAATTGCAAAAAAACTTAATGTTAGAAACTTTGAAATCTGTCTGACAAAGCATAAGGAGAAAACGGCAATTAAGATGGAAACATCTGACTCcacaataaaaacaaaaaacattgtaaCCACGCAAACATCTCTGTTCAACCCAAGCCCTGactctgaaggagacgacacacAGATGTCTCCATCGACGCTAACAACACAAACATCAGATGTAGGGGAGTCCTCTTCGAGAAGAAAGCAGAAACGAAAATGCATTCCCGTGCCAAAACATGGTGAAATATTGACGATCCTTCGCAACCAGTTTGAAGATCTGGTGAAGCAGATGGAAAGTAGGAGGGAGGACAGCCAACAGAAGACATTTCCTGAAGAGTTGGATCTCATGAAGCAGGAATTTGGGAAAATCAGACAAAAGTTCTCTGAGGTTCACAGAGTGAAGAAATTGATTAAACTTGGTGCCTCCGTTTGTCAGGTGATTGTTGAAGGTGTTCAGGGTGTTCTGGGGACAGGCTTCGTGCTGTTTGACAACTACATCCTAACAAATGCACATTTGTTTGGTGAAAATGTAAGAGAAAACATACAGTTGTTAGTCGATGTATCTGTAAAGTTCAACTATGAAAATCCAAATGGATCCGATGTGAACGTATTCAGAGCAAAAACCCTGCTGATCGACTTTCAATATGGACATCAGGGAAAACATCATATAGACTATGCCATACTGGAGCTGGATCCTCAGAATAAGAAACAACGGCAAAAGGTTCCTCCTGGTCTCCTCCGTGAATATGGCCCAGTCCCAGCATGCGGTGGGGCCTGCCTCATTGGACACCCAGGTGGACTGGTGAAACAAATGGAACCCACCTCCATCATTGGCAGTGAGATAAGAGAGGAGGCTGCGAATAAATATAAACGGGAAAAGGGACATGCAATCTTCACAATAAACGATGCCCTTGAAAAAGAGAAAAAGCGTTACGATGAAGTGACGCAGGAGAACAAGGACGACTTTGTGACCTACAACACCTCCTTCTTCCATGGATCTTCTGGCTCGCCAGTCTTCGATGACCTTGGTCGAGTGTTTGGCATACATACTGGTGGCTTTGAATATGAGGATAAGCGCACTCAGAGCAAACAGAGTGTGTTAGAGTACGCCCTCCCTCTGCTCCCCATATTACGGAACTTTGTCATCCGTTTGGAGGAGGACAACAATCAGGCAGATTTGAAAAGAGTTAAGGAAGAGGTACAGGAAAACGTCTTCCTGAATGAGGCTCTTTTCACGACAGATGGTGATGAGCCTATGGATATGTCGTAGGAGATTGTTGCAAATACAGCTAATTCAATGCCACCCAGTGGTTGTCCTGGGAACAACACAACAATGCCACCCAGTGGTTGTCCTGGGAACAACACAACAATGCCACCCAGTGGTTGTCCTGGGAACAACACAACAATGCCACCCAGTTGTTGTCCTGGGAACAACACAACAATGCCATCCAGTGGTTGTCCTGGGAACAACACAACAATGCCACCCAGTGGGTGTCTTTGCAAATACTGTAACGTTAGTATTTATGTTCAACCATTCCACTAGTGCCTTTTGGGCATTTTTAGGATATTGATAGATTACTTGTCCGAGGTCAAAGgtacatgtttaaaaaaaataaaatgttttgttttatctCATGCACCTTTGTTTTCTGTAATTCTCATCACTGGTTCCTTATGATGTATTCTGCATTTCTGTGAAGCATGGTTTCTTTTGAAAAATATACTTTGGTCTCAGTGGGCCTTCTCtgcaaaaataaacatttcataGATTAAGACATCTACCTAGATCAGATTGCAACTATCTAAATATTGTTTTATTGTGTTCTACATTTTGATTACTTGTCTTTTTCTTTAACTTACTTCATGGATCCATCGTTTTGCTTTCTTGGTTTGACATGTAAAGGTTAATCATGAGTACAATGTGTTAACTGTAATTACATTGGAATACTGTATGCATCATTTAGACATTGTTTTCATTTCATGAGTTGTAACAATCATGCATAAAACTAGTGACAGACTGACTAATCAATAAATGTGTTGACAATTA

Function

NR:

description
protein FAM111A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956670.1 False 2856 mRNA 0.42 4 5340534 5350434
XM_036956669.1 True 2891 mRNA 0.42 3 5340535 5350434

Neighbor

gene id symbol gene type direction distance location
LOC110516940 LOC106609861 coding upstream 140341 5182911 ~ 5200193 (+)
LOC118942832 LOC106576641 coding upstream 160595 5173660 ~ 5179939 (+)
LOC118942833 NA coding upstream 163850 5175495 ~ 5176684 (+)
LOC110490690 nu107 coding upstream 167105 5120120 ~ 5173429 (+)
LOC118936571 rap1b coding upstream 228599 4998226 ~ 5111935 (+)
LOC118942836 LOC106576675 coding downstream 51774 5402208 ~ 5416558 (+)
LOC110491886 tmbim4 coding downstream 107105 5457539 ~ 5472994 (+)
LOC110511233 LOC107655547 coding downstream 212788 5563222 ~ 5598052 (+)
LOC118942839 NA coding downstream 243247 5593681 ~ 5595397 (+)
LOC110519381 LOC106576618 coding downstream 261452 5611886 ~ 5657179 (+)
G1703252 NA non-coding upstream 3234 5337031 ~ 5337300 (+)
G1703251 NA non-coding upstream 3670 5336491 ~ 5336864 (+)
G1703247 NA non-coding upstream 10035 5330283 ~ 5330499 (+)
G1703246 NA non-coding upstream 10953 5329214 ~ 5329581 (+)
G1703242 NA non-coding upstream 15734 5324589 ~ 5324800 (+)
G1703235 NA non-coding downstream 905 5351339 ~ 5352342 (+)
G1703256 NA non-coding downstream 10167 5360601 ~ 5361028 (+)
G1703262 NA non-coding downstream 53767 5404201 ~ 5406960 (+)
G1703267 NA non-coding downstream 60426 5410860 ~ 5412554 (+)
G1703230 LOC106592946 non-coding downstream 74053 5424487 ~ 5493284 (+)
G1702856 NA other upstream 85649 5254165 ~ 5254885 (+)
G1702793 NA other upstream 286070 5052447 ~ 5054464 (+)
LOC110516816 LOC107655592 other upstream 939553 4384016 ~ 4441236 (+)
G1702554 NA other upstream 945019 4394993 ~ 4395515 (+)
G1703391 NA other downstream 366765 5717199 ~ 5717701 (+)
G1703427 LOC106590880 other downstream 632911 5983345 ~ 5994810 (+)
mrps33 mrps33 other downstream 877680 6228081 ~ 6252333 (+)
G1703953 NA other downstream 1055598 6406032 ~ 6406773 (+)

Expression


Co-expression Network