LOC118942836 (LOC106576675)


Basic Information

Item Value
gene id LOC118942836
gene name LOC106576675
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5402208 ~ 5416558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956671.1
TTCATCGTCAGATCAAATAACTACAAAGATGGAGAACATGAAGATGGCTGAGCCTAATGATAGCACGATTTATCCAAAAAAGGAACACTGTCACTCATTCTCCTTCAGTTGCCCAGCTCGTAAAATAACCAAAGAGGAAATCACCTGCACCAACCCTGGAACAATATTGAGAGCTCTTGGAACTAATGACACATTCGAGGAGTTAAACCAAATGGACAGGAACACACCGAAAGAGAAAGACATTGTCATCAGCAGTTCTCACGGGTACATAGTGAAGCACTTTCCATGTTGGCTGATCAAAGAGGATGACCATCTCACTATTAAGATGGTCACACATGCCACAGATGAACCTGCAGGGGTCACGGATCAGGAAACAGACAATTATGTCACTTTCTCTGTTGAGACAACGGGAGGGAAAAACAGCAAATCAAAACAAATACTTGGAAACAGCCAACTGGAGTCCTACAGACCTCTATGTGTCTATGCAAAACAGGAGGAGGAAGTGAAGAAGGCTCTACGAAATGATGGACGCTTCTCAAACATTGTGTTTGAACAGAAATGCCAGCTCTCTGAGCGATCAACAGGAAGCAAGGTTTCAATGGGGCAAATTGCAAAAAAACTTAATGGTAGAAACTTTGAAATCTGTCTGACAAAGCATAAGGAGAAAACGGCAATTAAGATGGAAACATCTGACTCcacaataaaaacaaaaaacattgtaaCCACGCAAACATCTCTGTTCAACCCAAGCCCTGACTCTGAAGGAGACGGCACACAGATGTCTCCATCGACGCTAACAACACAAACATCAGATGTAGGGGAGTCCTCTTCGAGAAGAAAGCAGAAACGAAAATGCATTCCCGTGCCAAAACATGGTGAAATATTGACGATCCTTCGCAACCAGTTTGAAGATCTGGTGAAGCAGATGGAAAGTAGGAGGGAGGACAGCCAACAGAAGACATTTCCTGAAGAGTTGGATCTCATGAAGCAGGAATTCGGGAAAATCAGACAAAAGTTCTCTGAGGTTCACAGAGTGAAGAAATTGATTAAACTTGGTGCCTCCGTTTGTCAGGTGATTGTTGAAGGTGTTCAGGGTGTTCTGGGGACAGGCTTCGTGCTGTTTGACAACTACATCCTAACAAATGCACATTTGTTTGGTGAAAATGTAAGAGAAAACATACAGTTGTTAGTCGATGTATCTGTAAAGTTCAACTATGAAAATCCAAATGGATCCGATGTGGACGTATTCAGAGCAAAAACCCTGCTGATCGACTTTCAATATGAAGATAAGGGAAAACATCATACAGACTATGCCATACTGGAGCTGGATCCTCAGAATAAGAAACAACGGCAAAAGGTTCCTCCTGGTCTCCTCCGTGAATATGGCCCAGTCCCAGCATGCGGTGGGGCCTGCCTCATTGGACACCCAGGTGGACTGGTGAAACAAATGGAACCCACCTCCATCATTGGCAGTGAGATAAGAGAGGAGGCTGCGAATAAATATAAACGGGAAAAGGGACATGCAATCTTCACAATAAACGATGCCCTTGAAAAAGAGAAAAAGCGTTACGAGGAAGTGATGCAGGAGAACAAGGACGACTTTGTGACCTACAACACCTCCTTCTTCCATGGATCTTCTGGCTCGCCAGTCTTCGATGACCTTGGTCGAGTGTTTGGCATACATACTGGTGGCTTTGAATATGAGGATAAGCGCACTCAGAGCAAACAGAGTGTGTTAGAGTACGCCCTCCCTCTGCTCCCCATATTACGGAACTTTGTCATCCGTTTGGAGGAGGACAACAATCAGGCAGTTTTGAAAAGAGTTAAGGAAGAGGTACAGGAAAACGTCTTCCTGAATGAGGCTCTTTTCACGACAGATGGTGATGAGCCTATGGATATGTCGTAGGAGATTGTTGCAAATACAGCTAATTCAATGCCACCCAGTGGTTGTCCTGGGAACAACACAACAATGCCACCCAGTGGTTCTCTTTGCAAATACTGTAACGTTAGTATTTATGTTCAACCATTCCACTAGTGCCTTTTGGGCATTTTTAGGATATTGATAGATTACTTGTCCGAGGTCAAAGgtacatgtttaaaaaaaataaaatgttttgttttatctCATGCACCTTTGTTTTCTGTAATTCTCATCACTGGTTCCTTATGATGTATTCTGCATTTCTGTGAAGCATGGTTTCTTTTGAAAAATATACTTTGGTCTCAGTGGGCCTTCTCtgcaaaaataaacatttaatagATTAAGACATCTACCTAGATCAGATTGCAACTATCTAAATATTGTTTTATTGTGTTCTACATTTTGATTACTTGTCTTTTTCTTTAACTTGTTGAATAGAGTAATGTGgaatagaatcatgttgaatagaatcgtgttgaatagaatcatgttgaatagaatcatgttgaatagaatcatgttgaatagaatc

Function

NR:

description
protein FAM111A-like

GO: NA

KEGG:

id description
K24275 FAM111B; protein FAM111B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956671.1 True 2453 mRNA 0.42 2 5402208 5416558

Neighbor

gene id symbol gene type direction distance location
LOC118942835 LOC106576675 coding upstream 51774 5340534 ~ 5350434 (+)
LOC110516940 LOC106609861 coding upstream 202015 5182911 ~ 5200193 (+)
LOC118942832 LOC106576641 coding upstream 222269 5173660 ~ 5179939 (+)
LOC118942833 NA coding upstream 225524 5175495 ~ 5176684 (+)
LOC110490690 nu107 coding upstream 228779 5120120 ~ 5173429 (+)
LOC110491886 tmbim4 coding downstream 40981 5457539 ~ 5472994 (+)
LOC110511233 LOC107655547 coding downstream 146664 5563222 ~ 5598052 (+)
LOC118942839 NA coding downstream 177123 5593681 ~ 5595397 (+)
LOC110519381 LOC106576618 coding downstream 195328 5611886 ~ 5657179 (+)
LOC118936346 dera coding downstream 448732 5865290 ~ 5879297 (+)
G1703256 NA non-coding upstream 41180 5360601 ~ 5361028 (+)
G1703235 NA non-coding upstream 49866 5351339 ~ 5352342 (+)
G1703252 NA non-coding upstream 64908 5337031 ~ 5337300 (+)
G1703251 NA non-coding upstream 65344 5336491 ~ 5336864 (+)
G1703247 NA non-coding upstream 71709 5330283 ~ 5330499 (+)
G1703230 LOC106592946 non-coding downstream 7929 5424487 ~ 5493284 (+)
G1703270 NA non-coding downstream 23338 5439896 ~ 5440192 (+)
G1703273 NA non-coding downstream 25933 5442491 ~ 5443790 (+)
G1703281 NA non-coding downstream 43700 5460258 ~ 5460745 (+)
G1703282 NA non-coding downstream 60634 5477192 ~ 5478407 (+)
G1702856 NA other upstream 147323 5254165 ~ 5254885 (+)
G1702793 NA other upstream 347744 5052447 ~ 5054464 (+)
LOC110516816 LOC107655592 other upstream 1001227 4384016 ~ 4441236 (+)
G1703391 NA other downstream 300641 5717199 ~ 5717701 (+)
G1703427 LOC106590880 other downstream 566787 5983345 ~ 5994810 (+)
mrps33 mrps33 other downstream 811556 6228081 ~ 6252333 (+)
G1703953 NA other downstream 989474 6406032 ~ 6406773 (+)

Expression


Co-expression Network