LOC118942837 (b2mg)


Basic Information

Item Value
gene id LOC118942837
gene name b2mg
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5420336 ~ 5426626 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956672.1
tcattTCTTCGTTTGCGACAGTCGGTTTTGTCCTGTTTGACATATTTTTCAGCGTTGGAAAGACTTGGAAAAAAAGAAATAATGAAAACGCTTTTGTCCGTAGTTGCATTCTGCGTCGTGTTGGTGACCATAAACGCAAAAGAATCTCCCCCCAAGGTGCAGGTGTACAGCCGTAACCCAGGGGAATATGGGAAGGACAACACCCTGATCTGTCACGTGAGTGGCTTCCACCCCCCTGACATCAGCATCCAGCTCCTGAAGAACGGCGTGGAGATCCCCGACGCCAAGCAGACAGACCTGGCCTTCGAACAGGGATGGCAGTTCCACCTCACCAAGAGTGTTGGATTCACACCAGCCAGCGGAGAGGAGTATACCTGCAGAGTCCGCCACCTGAAGAATCTGAAGAcctacacctgggAATCAGATATGTAAGGCTTCGGTGTTCATCGCTGCAGAATACACCAGCCTCTGAGAATCTCCACTCCGGACATTCCTGGGAAtcatctccacaacactgtcctgtctaaa
>TU1949830
GTTTGACATATTTTTCAGCGTTGGAAAGACTTGGAAAAAAAGAAATAATGAAAACGCTTTTGTCCGTAGTTGCATTCTGCGTCGTGTTGGTGACCATAAACGCAAAAGAATCTCCCCCCAAGGTGCAGGTGTACAGCCGTAACCCAGGGGAATATGGGAAGGACAACACCCTGATCTGTCACGTGAGTGGCTTCCACCCCCCTGACATCAGCATCCAGCTCCTGAAGAACGGCGTGGAGATCCCCGACGCCAAGCAGACAGACCTGGCCTTCGAACAGGGATGGCAGTTCCACCTCACCAAGAGTGTTGGATTCACACCAGCCAGCGGAGAGGAGTATACCTGCAGAGTCCGCCACCTGAAGAATCTGAAGAcctacacctgggAATCAGATATGTAAGGCTTCGGTGTTCATCGCTGCAGAATACACCAGCCTCTGAGAATCTCCACTCCGGACATTCCTGGGAAtcatctccacaacactgtcctgtctaaactcatctccacaacactgtcctgtcaaaactcatctccacaacactgtcctgtcaaaactcatctccacaacactgtcctgtcaaaactcatctccacaacactgtcctgtcaaaatcatctccacaacactgtcctgtctaaatcatctccacaacactgtcctgtcaAAATCATCTCCACAAAACtcatctccacaacactgtcctgtctaaactcatctccacaacactgtcctgtctaaatcATCTCCACAACACAGTCCTGTCAAAAAtcatctccacaacactgtcctgtctaaatcatctccacaacactgtcctgtcaatcatctccacaacactgtcctgtctaaatcatctccacaacactgtcctgtctaaACACTGCAGGTGAAATCTGTAATGACTCTCTGCACATTGGGACTGATCATTGAActtaaattgtattttatttgaccagactatacagtaggacctgggctatgtaatgtgttaatctatacagtaggacctgggctatgtaatgtgttaatctat

Function

NR:

description
beta-2-microglobulin-like

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I biological_process
GO:0005576 extracellular region cellular_component
GO:0042612 MHC class I protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956672.1 False 528 mRNA 0.51 4 5420874 5426626
TU1949830 True 1032 TUCP 0.46 4 5420336 5426592

Neighbor

gene id symbol gene type direction distance location
LOC118942834 LOC106576655 coding downstream 107841 5236240 ~ 5313033 (-)
LOC118942990 NA coding downstream 192787 5226069 ~ 5228087 (-)
LOC110518655 LOC106592876 coding downstream 196538 5202814 ~ 5224336 (-)
LOC118942989 NA coding downstream 360556 5052618 ~ 5060318 (-)
LOC118936570 mdm1 coding downstream 450483 4932214 ~ 4970391 (-)
LOC110491894 b2m coding upstream 8650 5435276 ~ 5452253 (-)
LOC118942838 NA coding upstream 17333 5443959 ~ 5449928 (-)
LOC110491889 b2m coding upstream 26344 5452948 ~ 5456355 (-)
vhll NA coding upstream 51819 5478445 ~ 5480899 (-)
LOC110511232 wif1 coding upstream 69593 5496219 ~ 5561423 (-)
G1703316 NA non-coding downstream 51330 5369094 ~ 5369544 (-)
G1703313 NA non-coding downstream 59654 5360596 ~ 5361220 (-)
G1703312 NA non-coding downstream 60356 5360296 ~ 5360518 (-)
G1703298 b2mg non-coding downstream 61956 5351270 ~ 5358918 (-)
G1703307 NA non-coding downstream 84594 5336006 ~ 5336280 (-)
G1703323 NA non-coding upstream 2842 5429468 ~ 5430889 (-)
G1703330 NA non-coding upstream 39943 5466569 ~ 5467856 (-)
G1703334 NA non-coding upstream 55235 5481861 ~ 5482386 (-)
G1703550 NA non-coding upstream 73091 5499717 ~ 5500536 (-)
G1703573 NA non-coding upstream 156531 5583157 ~ 5585446 (-)
G1703200 NA other downstream 185649 5232635 ~ 5235225 (-)
G1703190 NA other downstream 218817 5200387 ~ 5202057 (-)
G1703085 NA other downstream 473463 4946598 ~ 4947411 (-)
G1703658 NA other upstream 472716 5899342 ~ 5899781 (-)
LOC118942843 NA other upstream 523408 5950034 ~ 5963423 (-)
G1703669 NA other upstream 565072 5984365 ~ 5996426 (-)

Expression


Co-expression Network