LOC110491894 (b2m)


Basic Information

Item Value
gene id LOC110491894
gene name b2m
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5435276 ~ 5452253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956675.1
GAAGTGGGTGCGGCTTCACTACATATCACGAATAATATATATTTTGCTTTCTTCAGACACCGGCTGCAAAGTCTGTTTTGTTTGTCGCAGTTTTATATTTTTTCAACCTTGGAAAGAAATCATGAAAACTGTTTTGTCCGTGATCGCTTTCTGCATCTTCCTGGGGTTCATAAACGCAAAAGAATctCCCCCCAAGGTGCAGGTGTACAGCCGTAACCCAGGGCAACATGGGAAGGACAACACCCTGATCTGTCACGTGAGTGGCTTCCACCCCCCTGACATCAGCATCCAGCTCCTGAAGAACGGCGTGGAGATCCCCGACGCCAAGCAGACAGACCTGGCCTTCGAACAGGGATGGCAGTTCCACCTCACCAAGAGTGTTGGATTCACACCAGCCAGCGGAGAGGAGTACACCTGCAGAGTCCGCCACCTGAAGAATCTGAAGAcctacacctgggAGGCAGATATGTAAGGATCTGGAGCAGGACATAATGGGGGCCATTCCATCTGTGACCAGCCCTACACTAGAGCTGAGATGACTGTAATTTCCCCTCTCAACATGGgctttttcattttcatttttgaTAACACTTTGTGCCAAGGTGCCAGTTTCAAGGGTTTTGAGTTTTAGAGAATCATTACTAAATACTTAAATGATTACAGATGTGTGGGTGACCTCTTCTAGAAAAGCTGTCTGTATTTCTGGCTGAGAATTCAATGTGTGGGTGACCTCTTCTAGAAAAGCTGTCTGTATTTCTGGCTGAGAATTCAATGTCTTCTTTAAAAACAATAATTAATGATTGATCAAGTattttcaatatatatttttttagatgtGTGGGGACTTTAATATCCTTAAGTGTGAGCACTATTTTTTTTAACATAATTTTAAACACCACATGTTGATGTGGTTTTAGTTACAAGCACAAATCGTCAACAATGTAAAAtttgattaaaaatatatttaaaagccCAAATAATTTGCAGAACATCCATTGTTGTATTTGCTTGTAAATAGAAATGTCCTTTTTG

Function

symbol description
b2m Predicted to enable MHC class II protein complex binding activity. Predicted to be involved in antigen processing and presentation of exogenous peptide antigen via MHC class II; peptide antigen assembly with MHC class II protein complex; and positive regulation of T cell activation. Predicted to act upstream of or within several processes, including MyD88-dependent toll-like receptor signaling pathway; negative regulation of innate immune response; and negative regulation of toll-like receptor signaling pathway. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be part of MHC class II protein complex. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in arthritis; familial visceral amyloidosis; immunodeficiency 43; and inflammatory bowel disease. Orthologous to human B2M (beta-2-microglobulin).

NR:

description
beta-2-microglobulin-like

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I biological_process
GO:0005576 extracellular region cellular_component
GO:0042612 MHC class I protein complex cellular_component

KEGG:

id description
K08055 B2M; beta-2-microglobulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956675.1 True 1032 mRNA 0.41 4 5435276 5452253

Neighbor

gene id symbol gene type direction distance location
LOC118942837 b2mg coding downstream 8650 5420336 ~ 5426626 (-)
LOC118942834 LOC106576655 coding downstream 122243 5236240 ~ 5313033 (-)
LOC118942990 NA coding downstream 207189 5226069 ~ 5228087 (-)
LOC110518655 LOC106592876 coding downstream 210940 5202814 ~ 5224336 (-)
LOC118942989 NA coding downstream 374958 5052618 ~ 5060318 (-)
LOC110491889 b2m coding upstream 717 5452948 ~ 5456355 (-)
vhll NA coding upstream 26192 5478445 ~ 5480899 (-)
LOC110511232 wif1 coding upstream 43966 5496219 ~ 5561423 (-)
LOC118942840 NA coding upstream 232209 5652498 ~ 5686229 (-)
LOC118942841 NA coding upstream 235692 5687945 ~ 5822290 (-)
G1703323 NA non-coding downstream 4387 5429468 ~ 5430889 (-)
G1703316 NA non-coding downstream 65732 5369094 ~ 5369544 (-)
G1703313 NA non-coding downstream 74056 5360596 ~ 5361220 (-)
G1703312 NA non-coding downstream 74758 5360296 ~ 5360518 (-)
G1703298 b2mg non-coding downstream 76358 5351270 ~ 5358918 (-)
G1703330 NA non-coding upstream 14316 5466569 ~ 5467856 (-)
G1703334 NA non-coding upstream 29608 5481861 ~ 5482386 (-)
G1703550 NA non-coding upstream 47464 5499717 ~ 5500536 (-)
G1703573 NA non-coding upstream 130904 5583157 ~ 5585446 (-)
G1703574 NA non-coding upstream 131358 5583611 ~ 5586059 (-)
G1703200 NA other downstream 200051 5232635 ~ 5235225 (-)
G1703190 NA other downstream 233219 5200387 ~ 5202057 (-)
G1703658 NA other upstream 447089 5899342 ~ 5899781 (-)
LOC118942843 NA other upstream 497781 5950034 ~ 5963423 (-)
G1703669 NA other upstream 539445 5984365 ~ 5996426 (-)
G1703878 NA other upstream 853300 6305553 ~ 6308220 (-)

Expression


Co-expression Network