LOC110491886 (tmbim4)


Basic Information

Item Value
gene id LOC110491886
gene name tmbim4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5457539 ~ 5472994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956674.1
TGTGTTACGCTATTGCAGGTTTCACAGAAATCACGAGCCATGTCACATGACGAACGTTTACAAACCAAGCCGGAAGTGGAGTGAACTGACGCACGTCAACCGGAACAGCTGTGCAAGGGCCCCAAAACAGAAAACATCAAGGCAGTATTTTAGTCTGAATTAAAGCTGGATCAAGATGACTACACCTGAAAAATACCCTAGGTCTTCAATTGAAGATGATTTCAACTATGGAACAAATGTTGCGACAGCGAGTGTGCAAATCCGGATGGATTTCCTGCGCAAGGTATACACCATCCTTTCTCTTCAGATCATCCTGACCACGGCTACCTCTGCTCTCTTCATGTACTGTGACACCATCAAGGACTTTGTCCATTCAAGTCCAGCGGTTGTGTTGGTGTCAGCCATTGGCTCCCTGGTGTTGATCATTGCCCTGGCCTTCTACAGACATCAACACCCCATTAACCTGTACCTGCTTGCCGCATTCacTCTGTTGGAGTCGGTGTCTGTTGCTACCGCAGTGACCTTCTATGAGTATTCCATCGTGCTCCAGGCCTTCTTCCTCACAGCAGCTGTGTTCCTTGGGCTGACTGCCTACACCTTCCAGTCTAAGAGAGACTTCAGTAAACTGGGAGCTGGACTGTTCTCCGGCCTGTGGATCCTGATCATCGCTGGTTTCATGAAGCTCTTCTTCCAGAATGACACAGTGGAGCTGTTGTTTGCTGGTGCGGGAGCTCTGTTGTTCTGTGGCTTCATCATCTACGACACCCACCTCCTGATGCACCAGCTGTCCCCTGAGGAGCACGTCCTGGCCTCCATTAACCTGTACCTGGACATCGTTAACCTCTTCCTGCACATCCTCCGCATGCTGGACTCCATGAAGAAAAACTGACCTTCTATTCCCTCATTTagtgcactacactacacactattaCCTaatttagtgcactacgttttgaccagggccctgtatgAACGTAGTGCACCGTAAAGGGAATAGTGTGTGGTTTGGGACTCTGCCCCCGATTTAGGTGATCAGCTGCTTGGCTCACAGGGTGACTTGGGATCGATTCAGTTCTCAATTCAGTAACATTTTCTTGTAATTATTTATAAAATCCTCATAGAAAAGAAAATTGATATTTATCGATTCACCTCCCATGAATTGAAAACTGATTTGCCCTCCATCTCTGATAGCCGACCCTGCTGTAGATCCTTCCAGTGATGGTGAAACATGAACCCACGCCGTCTTAAGTTTAACCCCTGGagataatattatattataaccTGTGCCATTTTGTGTTTTTTATCATTTTGGACTTAATTCTGTTTTTGTTCTCATACTGTTTATTATTCTGAAtgtaaaacaaacacaaaaaatcATATTTAATTGTGTGTTGCTCGCTCGGTGAATGATTCCTTTCTGAATATTCAGGCGTACGGATTACGGAAGGTTGTTGTGGTGTAAGAAAGCAGAACACATTTCTTAGGAAAGTACTTCGTTCTACTTTAGTTTTAACTTCCCATCCCCCTCGCTTGCTGGTATACTGAATAAACTGGCCATGATCATTGTAGAAAGACTTGAATAGTAGTCACAGTAAAGTTGTATAAAAATACACTATTCTCTACTATTGACTTCACCAGAGAAAATGTATCACatagcaacctattccctatatagtgcactacttttgacaagggtaCGCATCCCAAATgggtccctattccctatatagtacactacttatgaccagaacccgtgtcccaaatgggacccaattccatatgtagtgcactacttttgaccagaggtcatgtcccaaatgggaccccattccctatatagtgcactacttttgaccaccaaatgggaccctattccctatatagtacactacttttgaccaaagccctatgggtcATTTGATGACAGAGATTTGATATGCCAGCAAACAGAGGGATCCTCTGGGAACAGGAAACATGTTCAACCAGTTAGCTGGTGGGCAGAACCATGTACAGTAGAACACTACCACATCAGATGTCAGGAAAGGGAATCTGAAGAACACGACAGGTCTGAACACCAAGAGGTTTCCATTAGACATCATGTAAATACTAATGAAGAGATTTTACTAGGCTCTATATTCTGTTTCCTCAAGTCATTCATTTATTAACAAAGTTGCAATACAAATTGTCACGTGGAATGTAAAGTAGTTGCACATCTATTCAGTGAACTGTGAATCAACCGTCAATTGTATATGCTTTGATTTCTTGATTAAATTGTAAAGTGGAGTGTTTTAAATTTT

Function

symbol description
tmbim4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMBIM4 (transmembrane BAX inhibitor motif containing 4).

NR:

description
protein lifeguard 4-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956674.1 True 2297 mRNA 0.43 7 5457539 5472994

Neighbor

gene id symbol gene type direction distance location
LOC118942836 LOC106576675 coding upstream 40981 5402208 ~ 5416558 (+)
LOC118942835 LOC106576675 coding upstream 107105 5340534 ~ 5350434 (+)
LOC110516940 LOC106609861 coding upstream 257346 5182911 ~ 5200193 (+)
LOC118942832 LOC106576641 coding upstream 277600 5173660 ~ 5179939 (+)
LOC118942833 NA coding upstream 280855 5175495 ~ 5176684 (+)
LOC110511233 LOC107655547 coding downstream 90228 5563222 ~ 5598052 (+)
LOC118942839 NA coding downstream 120687 5593681 ~ 5595397 (+)
LOC110519381 LOC106576618 coding downstream 138892 5611886 ~ 5657179 (+)
LOC118936346 dera coding downstream 392296 5865290 ~ 5879297 (+)
LOC118942842 LOC106575061 coding downstream 506357 5979351 ~ 5986641 (+)
G1703273 NA non-coding upstream 13749 5442491 ~ 5443790 (+)
G1703270 NA non-coding upstream 17347 5439896 ~ 5440192 (+)
G1703267 NA non-coding upstream 44985 5410860 ~ 5412554 (+)
G1703262 NA non-coding upstream 50579 5404201 ~ 5406960 (+)
G1703256 NA non-coding upstream 96511 5360601 ~ 5361028 (+)
G1703282 NA non-coding downstream 4198 5477192 ~ 5478407 (+)
G1703286 NA non-coding downstream 6122 5479116 ~ 5479505 (+)
G1703290 NA non-coding downstream 13383 5486377 ~ 5486680 (+)
G1703291 NA non-coding downstream 20299 5493293 ~ 5494453 (+)
G1703337 NA non-coding downstream 26116 5499110 ~ 5501117 (+)
G1702856 NA other upstream 202654 5254165 ~ 5254885 (+)
G1702793 NA other upstream 403075 5052447 ~ 5054464 (+)
LOC110516816 LOC107655592 other upstream 1056558 4384016 ~ 4441236 (+)
G1703391 NA other downstream 244205 5717199 ~ 5717701 (+)
G1703427 LOC106590880 other downstream 510351 5983345 ~ 5994810 (+)
mrps33 mrps33 other downstream 755120 6228081 ~ 6252333 (+)
G1703953 NA other downstream 933038 6406032 ~ 6406773 (+)

Expression


Co-expression Network