LOC110511232 (wif1)


Basic Information

Item Value
gene id LOC110511232
gene name wif1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5496219 ~ 5561423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956678.1
TCTCACTGTCAATGAAAGAGGCTCACTCACGGCATACCTACCAGACTTGAGTACAGTGGCAAACTcagcatacacagacacacaattgaACTACGAGGAGAGCCGAACGGAGATACATTTACAATTTAAAGGGTTAGATTTGAGAGGCTTGTAACTCAGGATGGCTACCGAGACAGCCTCTGTTCTTCTGTCCCCCATCAAAACGTGCTTTCTTCTACTTTTGGGTGGTTTGATGTCCAAAGCTGCGCAGGAGCAGCAGGGAAGTTTGTACATGTGGATTGATGCCAACCAAGCCAGAATCCTAATTGGTTTTGAGGAGGATATCTTGATCGTGTCAGAGGGAAAGATGGCTCCATTCACAACGGACTTCAGAAAGGCCCAGCAGAGGATGCCTGCGATACCTGTCAATATCCAGAACGTCAACTTCACCTGGCAAGCTACTGAACAGGCAGAGTACTTCTATGAGTTCCAGACACTGCGCTCCATGGATGTGGATATCATGGACAACCCCACGGTCAACGTTCCTCTCCTTGGCTCTGTACCACGTAGGCCCTCAGTGGTGCAGGTGGGCTTCCCGTGTTTAGGAGACCAGGATGGCGTAGCGGCGTTCGAGGTCACCATACTGGTCATGGACGCCGGTGGGAACATCATcctgaggacacctcacaatgcCATCTTCTTCAAGACCTGCCAGAGAGcTAAATGTCCAGGTGGTTGTCGTAACGGTGGGTTCTGCAACGAGAGACAGGTGTGTGAGTGTCAGGATGGTTTCTACGGGCCGCACTGTGAGAAAGCCCTCTGCTCTCCCAGGTGTCTGAATGGTGGACTGTGTATGAGTCCGGGGGTGTGCATCTGCCCACCTGGTTACTATGGAGACAGCTGTGACAAAGCTAACTGCAGCATCACATGTTTAAACGGAGGGACGTGCTTCCACCCAGGGAAGTGTATCTGTCCTGCAGGCTACGAGGGACCACGCTGTGGGATCAGTAAATGTCTCCAGCCCTGCAGGAACGGAGGGAAGTGCACTGGgaaaaacaaatgcaaatgtgACAAGGGTTTCCACGGCGACCTGTGTTCCAAGGctgtcTGTGAGCCCAGCTGTGGAGCCCATGGGACCTGTGTGGAACCCAACAAGTGCCTGTGTAAGGAGGGCTGGCACGGACGCCACTGTAACAAGAgatACAGAGGAGGTGCCTCTAACACCCATCGTCTCTCATCAGGCCCTAAACACAAGCCTCAGCAGCACTCCTCCTCTGCCAAGGAGGTGAAAGACGCCCCCGATGCCGACATCCCAGCAGAGACCAATTACGTGGTATAAGAGCCGGGTCCAGACAACCACACCTGGGTTCAAGCACTATTCAACATCTTTCAGATACTTTCAGCATCTGCTCTAGTCCGGTTGGCGGCGCCTGATGGGTGCGGCCTGGTGGGAGGGGTTTGATGGGTTGGGTTTGATGGGTGGGGTCTGATGGGCGGGGCCTGA

Function

symbol description
wif1 Predicted to enable signaling receptor binding activity. Acts upstream of or within negative regulation of canonical Wnt signaling pathway and swim bladder development. Predicted to be active in cell surface and extracellular region. Is expressed in several structures, including anterior swim bladder bud; nervous system; paraxial mesoderm; pharyngeal arch; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; renal cell carcinoma; and urinary bladder cancer. Orthologous to human WIF1 (WNT inhibitory factor 1).

NR:

description
wnt inhibitory factor 1

GO:

id name namespace
GO:0048794 swim bladder development biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K01691 WIF1; WNT inhibitory factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956678.1 True 1483 mRNA 0.53 10 5496219 5561423

Neighbor

gene id symbol gene type direction distance location
vhll NA coding downstream 15320 5478445 ~ 5480899 (-)
LOC110491889 b2m coding downstream 39864 5452948 ~ 5456355 (-)
LOC110491894 b2m coding downstream 43966 5435276 ~ 5452253 (-)
LOC118942838 NA coding downstream 46291 5443959 ~ 5449928 (-)
LOC118942837 b2mg coding downstream 69593 5420336 ~ 5426626 (-)
LOC118942840 NA coding upstream 123039 5652498 ~ 5686229 (-)
LOC118942841 NA coding upstream 126522 5687945 ~ 5822290 (-)
LOC118942843 NA coding upstream 389447 5950034 ~ 5963423 (-)
LOC110499738 lmo3 coding upstream 505712 6067135 ~ 6188810 (-)
LOC118942797 NA coding upstream 956465 6517888 ~ 6518853 (-)
G1703334 NA non-coding downstream 13833 5481861 ~ 5482386 (-)
G1703330 NA non-coding downstream 28363 5466569 ~ 5467856 (-)
G1703315 NA non-coding downstream 47439 5362420 ~ 5448780 (-)
G1703314 NA non-coding downstream 47732 5361761 ~ 5448487 (-)
G1703573 NA non-coding upstream 21734 5583157 ~ 5585446 (-)
G1703574 NA non-coding upstream 22188 5583611 ~ 5586059 (-)
G1703560 NA non-coding upstream 37114 5598537 ~ 5599225 (-)
G1703559 NA non-coding upstream 39059 5600482 ~ 5635961 (-)
G1703590 NA non-coding upstream 69400 5630823 ~ 5633128 (-)
G1703323 NA other downstream 66047 5429468 ~ 5430889 (-)
LOC118942834 LOC106576655 other downstream 183246 5236240 ~ 5313033 (-)
G1703200 NA other downstream 260994 5232635 ~ 5235225 (-)
G1703658 NA other upstream 337919 5899342 ~ 5899781 (-)
G1703669 NA other upstream 430275 5984365 ~ 5996426 (-)
G1703878 NA other upstream 744130 6305553 ~ 6308220 (-)
G1703896 NA other upstream 781318 6342741 ~ 6343182 (-)

Expression


Co-expression Network