LOC110511233 (LOC107655547)


Basic Information

Item Value
gene id LOC110511233
gene name LOC107655547
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5563222 ~ 5598052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956679.1
GTTACAGCTTTGAGTTTTTTCCCCCCCCTCCGAGTAAAGATGGCGACGGCGCAGCTAACGGACGATGAGCTTTTCTCTGAGTTAAAGAGCTTTGGATTCACTCCAGGCCCGGTCTCCGAGAATACGAGACCGGTTTATTTGAAAAAACTAAAGAAACTACGTGAGGAACAACAACAGAAAGGAGGAACCAGAGCggggaaaaaccgaaacagcggCAGTATCAACAACAACAGTAGTAGCGGTGGTAACGGCAGCTACACAGCGGCGGGAGCTTCGGGATGCGGAGCCAGGCCAGCTAGCCGTGACGTCACGCCCCGGAGCCCCGGTGGTCGACCGGTCCTGAACGAAAAGCGAACTGGTGGAGCGGGGAAGTTCGTATTGGGTTTTAGTTCGGACGAATCGGACGTAGAGGACCCGAAGAAAAAACGAGGAGCGAACCACAGCGGTAGGAGAGACCGAGGTTCCGCGTATCAACAACAACCGATCAGGCCTACAACGGGAGCTGCTACCGCCACTCGGAAGAGCCTGGGAGTCGCTGTGAGTACCAGCAGTAACAACTCCTCTCCCGCCGGGCTGCTGGAGGGGAGGAGAAGCGGAACCGGTTCTCTCAGTTGGGTGGACCGGGGAAAATCGAGCCTCGAGGTCTCGCGGGCCGCGGAAGTGAAGTGTTACGACGAAGAGCCCGAAGAAGACGACGATTTTCaaggggagacggagagagacagtcGGTCTCTGAATGGGAACAGGGCGTCTTACTCACTGAACGCCAGTAGTAAGAAAGTCGGTGATTACTCAGATtcggaggaagaggaagaagggggGATAATATCTGGGCAGGACCGTCAACGAGACCGGCGTACACAGGAACACTACTCCAGACGGAGTCACTCCTCCAAGCCGTCGCCCTACAGAAGTGCCAGGGGGTCAGAGAGCGGACAGGAAACCACTGGCGGCATGGCAATCAGGCTAAACGACACGCCTGGCGCTAGTAGGAGTCGACTAGACATGATGGGAGGccggggggaggaggaagaggaggaggaggaggaagagggaaagaaACGAGGCCCCGGCGAATCGTCCCTGAGCGGGAGCTTGCTGCGACGCCATTGCCCCAGGGGGACCATCTACGTGTCGGCTTTGATGGGGGAGAGCGACCGCGGCAGCCCCGGGGAAAGCAGCGGCAACAATTCCCCGTCCTCCGCCTACAACAAAAACCACATCGACAGCGGGGATGGcgccaccagcagcagcagccgaTTCAACATCGGCCTGAGACCGCGATTCTCCAACTACAACAGTCTATCCGCTACTTACCGACCCAACCATTCAAATCATAGCGGTCCCAACCATGCCTACAGCCAGTCGAGTCTCAAGCAGAAGCACACGGTACCGGAGGATGAGCTGCTCCAGCAATTCAAGCGGGAGGAGGTGGGGTCGTCCACCGGTGGTTGGGGGTTCAGTGCCCACTACCTGTCCATGTTCCTGCTCATGGCCGCCTGCCTGTTCTTCCTCCTGCTCGGCCTCATGTATCTCCGGATGAGGGGGTCTGGAGCCTCTGAGGTCGATGTTGTCGTTAAGAACCACCCGTTTGGCAGCGAGTTTGACAGTTCTTATGACAAGACGGAGAAGGACACCATTCTGAAACTCCTCCTCAACCTTCACGACCACCTGGCTCATATTGCTGGCCAACATGACTGTACCGCCCCGGAGCAGCATCAGGCCAACAGGAGTCTGTCTCTGAAGGAAGCCTCTGACTATCTCCTGCAGCAGAATGAACAGTACCGTCACTGGGTTCTCCTCGCTCTGGAGTGGATCATACGGACGGGGGAGGACGTTGGCATACGgctgatCGGGGATAACCCAGAGGAGGCAGTAGCGGATGTGAGTGAGGTGACTCGTCTGGAGTCGACCCACCCCAAGATGTCCTTCTCCTGCCGCTTCAGAAGAGCCTTTTTCACAGTCATCCACAGGGTGCTGCTCATCCTAACAGtgattggtctggtgtgggctgtatTCTACTACATGAAGTATCgttggaggagagaggaagaggagacccGGCAGATGTATGACATGGTGGAAAGAATCATAGGTGTTCTGAGGATCCACAACGCATCGTGTCAGGAGAACAATGACCTCCAGCCCTACCTGCCCATCCCTCACGTCAGAGACTCCCTGGTTCAGCCCCAGGACAGAAAGAAGCTGAAGAAGGTCTGGGACCGGGCTGTGACCTTCCTCTCAGCCAATGAGAGCCGTATCAGGACAGAGTCTCAGCGGATTGGCGGAGCCGACTTCCTGGTGTGGAGGTGGCTCCAGCCCTCTCTGAGCTGCGACCAGATCTCACTCGTCCCCTCCAAAGTCTGGCAGGGCAAAGcgTTCCCTCTGGACAGGAGGAACTCTCCTCCCAACAGTTTAACGGCGTGTCTGAAGATCAGAAACATGTTTGATCCAGTCATggaGGTTGGTGAAAACTGGCATCTGGCCATCCACGAGGCCATCTTGGAGAAGTGTTGTGACAACGACGGTATCGTCCACATCGCTGTCGACAAGAACTCCAGAGAGggctgTGTCTATGTGAAGTGTCTGTCAGCAGAACACTCAGGGAAAGCCTTCAAGGCGCTACATGGCTCCTGGTTCGATGGTAAGCTGGTGACGGTGAAGTACCTGCGTCTGGACCGTTACCACCAGCGTTTCCCTCAGGCCCAGGGCTGTACCACCTCCCTGAAGCCCTCAAACACCTACATGAACACCATGTCCAGACTACGTCACCACACCAGCCCTGACAGCAGCTCTAACACGAACTCTCTAGGCTTCTCttgaaggggggggggcagattaccccagcctcctctctccctccctcaaccccaCAGATACCACCACACCAGCCCTGACAGCAGCTCTAACACTAACTCTCTAGGCTTCtcctgagggggagggggggggggtagattaccccagcctcctctctccctcaacccCACCACACCAGCCCTGACAGCCCCTTCTTACCCCTGTGTAACGGTCTCACCTCAACACAAGCCCCCCTTCCTTCAGGCTCCCCTTAACAAGCCTCTACTGGAGGTGATGGCAGCTTGGTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTTTGTTTTCTCTTTTAAGTGGGACTTGACTGTTGGTTGTCCACAACCTGTCTGGACCACAGGAGTGGTGGGAGGCTTTAGACTGACAGTCCTGCAGTGTTTTTTGTTGTAAAGACCAATCAGAGTTTTGAAAACAAAACTTTGGAAGACCACTTGAACAACCAATGGGCTGAGAGATTGGAGACTAGGGGGGGGGGGCGTGGTCTGAGCTGGAGATGTGTGACTAGGGGGGCGTGGTCTGAGCTGGAGATGTGTGATTCGCCGGTTCCCCCGTCGACactattaaaaacattattttttttttttttttgtattacaaACTTTATGGATTTAAA
>TU1949920
ctgtattctactatatgaagtatctaatctaacctcctctctctctctctagtgattggtctggtgtgggctgtattctactatatgaagtatctaatctaacctcctctctctctctctagtgattggtctggtgtgggctgtattctactatatgaagtatctaatctaacctcctctctctctctctagtgattggtctggtgtgggctgtatTCTACTACATGAAGTATCgttggaggagagaggaagaggagacccGGCAGATGTATGACATGGTGGAAAGAATCATAGGTGTTCTGAGGATCCACAACGCATCGTGTCAGGAGAACAATGACCTCCAGCCCTACCTGCCCATCCCTCACGTCAGAGACTCCCTGGTTCAGCCCCAGGACAGAAAGAAGCTGAAGAAGGTCTGGGACCGGGCTGTGACCTTCCTCTCAGCCAATGAGAGCCGTATCAGGACAGAGTCTCAGCGGATTGGCGGAGCCGACTTCCTGGTGTGGAGGTGGCTCCAGCCCTCTCTGAGCTGCGACCAGATCTCACTCGTCCCCTCCAAAGTCTGGCAGGGCAAAGcgTTCCCTCTGGACAGGAGGAACTCTCCTCCCAACAGTTTAACGGCGTGTCTGAAGATCAGAAACATGTTTGATCCAGTCATggaGGTTGGTGAAAACTGGCATCTGGCCATCCACGAGGCCATCTTGGAGAAGTGTTGTGACAACGACGGTATCGTCCACATCGCTGTCGACAAGAACTCCAGAGAGggctgTGTCTATGTGAAGTGTCTGTCAGCAGAACACTCAGGGAAAGCCTTCAAGGCGCTACATGGCTCCTGGTTCGATGGTAAGCTGGTGACGGTGAAGTACCTGCGTCTGGACCGTTACCACCAGCGTTTCCCTCAGGCCCAGGGCTGTACCACCTCCCTGAAGCCCTCAAACACCTACATGAACACCATGTCCAG

Function

NR:

description
inner nuclear membrane protein Man1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956679.1 False 4386 mRNA 0.56 11 5563222 5598052
TU1949920 True 961 TUCP 0.52 6 5585531 5596428

Neighbor

gene id symbol gene type direction distance location
LOC110491886 tmbim4 coding upstream 90228 5457539 ~ 5472994 (+)
LOC118942836 LOC106576675 coding upstream 146664 5402208 ~ 5416558 (+)
LOC118942835 LOC106576675 coding upstream 212788 5340534 ~ 5350434 (+)
LOC110516940 LOC106609861 coding upstream 363029 5182911 ~ 5200193 (+)
LOC118942832 LOC106576641 coding upstream 383283 5173660 ~ 5179939 (+)
LOC110519381 LOC106576618 coding downstream 13834 5611886 ~ 5657179 (+)
LOC118936346 dera coding downstream 267238 5865290 ~ 5879297 (+)
LOC118942842 LOC106575061 coding downstream 381299 5979351 ~ 5986641 (+)
LOC110527635 LOC106590880 coding downstream 388723 5986775 ~ 5993790 (+)
mrps33 mrps33 coding downstream 630029 6228081 ~ 6252333 (+)
G1703338 NA non-coding upstream 60881 5501699 ~ 5502341 (+)
G1703337 NA non-coding upstream 62105 5499110 ~ 5501117 (+)
G1703291 NA non-coding upstream 68769 5493293 ~ 5494453 (+)
G1703230 LOC106592946 non-coding upstream 69938 5424487 ~ 5493284 (+)
G1703290 NA non-coding upstream 76542 5486377 ~ 5486680 (+)
G1703379 NA non-coding downstream 44184 5642236 ~ 5642693 (+)
G1703381 NA non-coding downstream 44945 5642997 ~ 5644121 (+)
G1703388 NA non-coding downstream 77691 5675743 ~ 5678147 (+)
G1703389 NA non-coding downstream 82014 5680066 ~ 5719953 (+)
G1702856 NA other upstream 308337 5254165 ~ 5254885 (+)
G1702793 NA other upstream 508758 5052447 ~ 5054464 (+)
LOC110516816 LOC107655592 other upstream 1162241 4384016 ~ 4441236 (+)
G1703391 NA other downstream 119147 5717199 ~ 5717701 (+)
G1703427 LOC106590880 other downstream 385293 5983345 ~ 5994810 (+)
G1703953 NA other downstream 807980 6406032 ~ 6406773 (+)
LOC118942844 large1 other downstream 1205167 6712920 ~ 6879730 (+)
G1702554 NA other upstream 1190016 4394993 ~ 4395515 (+)

Expression


Co-expression Network