LOC118942839


Basic Information

Item Value
gene id LOC118942839
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5593681 ~ 5595397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038475.1
tggtttagagaatgccaagagtgtgcaaagctgtcatcaaagcagagggtgcctactttgaagaatctcaaatgtaacattttttatttaacactttaACAGCCATCTGGTTATATATCCAGTGACCAGGTGGAACCAACAGCCGTCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATATGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCACACGGTTATATATCCAGGTGGAACCAACAGCCATGTGGTTATATATCCACTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCACGCGGTTATATATCCAGGTGGAACCAACAGCCATGTGGTTATATATCCACTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCATGTGGTT
>XR_005038477.1
TATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTAGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCACACGGTTATATATCCAGGTGGAACCAACAGCCATGTGGTTATATATCCACTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCACGCGGTTATATATCCAGGTGGAACCAACAGCCATGTGGTTATATATCCACTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCATGTGGTT
>XR_005038476.1
GTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCACACGGTTATATATCCAGGTGGAACCAACAGCCATGTGGTTATATATCCACTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCACGCGGTTATATATCCAGGTGGAACCAACAGCCATGTGGTTATATATCCACTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCATGTGGTT

Function

NR:

description
PREDICTED: MAGE-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038475.1 False 778 mRNA 0.45 3 5593681 5595397
XR_005038477.1 False 625 mRNA 0.47 3 5594467 5595397
XR_005038476.1 True 569 mRNA 0.47 3 5594483 5595397

Neighbor

gene id symbol gene type direction distance location
LOC110491886 tmbim4 coding upstream 120687 5457539 ~ 5472994 (+)
LOC118942836 LOC106576675 coding upstream 177123 5402208 ~ 5416558 (+)
LOC118942835 LOC106576675 coding upstream 243247 5340534 ~ 5350434 (+)
LOC110516940 LOC106609861 coding upstream 393488 5182911 ~ 5200193 (+)
LOC118942833 NA coding upstream 416997 5175495 ~ 5176684 (+)
LOC110519381 LOC106576618 coding downstream 16489 5611886 ~ 5657179 (+)
LOC118936346 dera coding downstream 269893 5865290 ~ 5879297 (+)
LOC118942842 LOC106575061 coding downstream 383954 5979351 ~ 5986641 (+)
LOC110527635 LOC106590880 coding downstream 391378 5986775 ~ 5993790 (+)
mrps33 mrps33 coding downstream 632684 6228081 ~ 6252333 (+)
G1703369 NA non-coding upstream 4754 5588630 ~ 5588927 (+)
G1703338 NA non-coding upstream 91340 5501699 ~ 5502341 (+)
G1703337 NA non-coding upstream 92564 5499110 ~ 5501117 (+)
G1703291 NA non-coding upstream 99228 5493293 ~ 5494453 (+)
G1703290 NA non-coding upstream 107001 5486377 ~ 5486680 (+)
G1703379 NA non-coding downstream 46839 5642236 ~ 5642693 (+)
G1703381 NA non-coding downstream 47600 5642997 ~ 5644121 (+)
G1703388 NA non-coding downstream 80346 5675743 ~ 5678147 (+)
G1703389 NA non-coding downstream 84669 5680066 ~ 5719953 (+)
G1702856 NA other upstream 338796 5254165 ~ 5254885 (+)
G1702793 NA other upstream 539217 5052447 ~ 5054464 (+)
LOC110516816 LOC107655592 other upstream 1192700 4384016 ~ 4441236 (+)
G1703391 NA other downstream 121802 5717199 ~ 5717701 (+)
G1703427 LOC106590880 other downstream 387948 5983345 ~ 5994810 (+)
G1703953 NA other downstream 810635 6406032 ~ 6406773 (+)
LOC118942844 large1 other downstream 1207822 6712920 ~ 6879730 (+)

Expression


Co-expression Network