LOC110519381 (LOC106576618)


Basic Information

Item Value
gene id LOC110519381
gene name LOC106576618
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5611886 ~ 5657179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956681.1
GAAGTCCACAGTAGACATTTCCCACTATAGTGCCAAGCTGCAAAGTCGAAATTGGCACAAATCGTGAAAATGTATGAAGACGTCAATTCGCTTTTTGCTCTTCATTTAAGAGTAGGTCAGACACACGTTTAGGAGTATGGTTAATGTTAAGCGTCGGTTTTGAAATCCGATTTTtaaagaagataaattgtagaactTCCGGGTTTTGCAGCTTGGCCATATAGTGACAACCCCTCAGACAGGCCAGCGGTGTGTTGTCCGTTTCTCTCGTCTCACTGAGTTGTGTTCACAGCTAATGCACGGACACGGACCGGACCGCCCGTCTGCCAGTGGGTTGACCATCTGCGTTACTTTGTTGTCCCTGCTACTTTTTACAGGAACCTGCCGGACCAAGAAGACATGGCCCAAGTCCTTCTCTCAGGAGGAGCTGAAGAAACGTCTCTCCCCCATTCAGTTCCATGTCACCCAGGAGAAAGGAACAGAGAgTGCCTTCAGAGGGGAATACACTGAATATAAAGAGGATGGCATCTACACCTGTGTCGTCTGTGGCTCCCCGCTGTTCAAGTCCGAGACCAAGTTTGACTCTGGATCAGGTTGGCCTTCCTTCTATGACCTGGTAAAGGAGGAGTCAGTCACTGTAACAGACGATTTCGCCTACGGGATGCACAGAGTTGAGACCAGCTGTAGTCAGtgtggttCTCACCTCGGACACCTGTTTGATGACGGCCCCAGACCCACAGGGAAACGATACTGCATCAACTCTGCCTCTCTGGGCTTCCAGTCCGCCTCAGCCTCTAGGCCACCCAGCAACGGagatggggctggggctgggacaggagctggggctgggacaggggctggggctgggacaggggctggggctgggacaggggctAGGGATGGGGCTGGTGGTGCGGTTGGGGGCAAGACTGAGCTCTGAGTAAAAGGTCTCCTTGGTCTTGGACAGATTTCAGGAATACAGGAAGTACAGGCACGGTCACTCACTCCTTATCCAAACTGGTGGCCTAGGTCCTGGTCGAAATGTTacgaacagaacagagaacagctGGAGAATATAGGTTACACAGAACCCGGAAACATTCAGCCAACTAGGTTACACAGATCCGAAAACGGTCAGACAACTAGGTTACACAGAACCCGAAAACAGTCAGACAACTACAGTCAGCTCAATAAGGGGCCATCGTCACCCCTTAGAAAACATGTGGAACATGATGCCTCTTCTGTGCTCATGTAGGttacacacacccaaacacagtCGGTCAAACACAGTCCGTCAAATGACCCCAGTGGCCATG
>XM_036956682.1
AAGTCCACAGTAGACATTTCCCACTATAGTGCCAAGCTGCAAAGTCGAAATTGGCACAAATCGTGAAAATGTATGAAGACGTCAATTCGCTTTTTGCTCTTCATTTAAGAGTAGGTCAGACACACGTTTAGGAGTATGGTTAATGTTAAGCGTCGGTTTTGAAATCCGATTTTtaaagaagataaattgtagaactTCCGGGTTTTGCAGCTTGGCCATATAGTGACAACCCCTCAGACAGGCCAGCGGTGTGTTGTCCGTTTCTCTCGTCTCACTGAGTTGTGTTCACAGCTAATGCACGGACACGGACCGGACCGCCCGTCTGCCAGTGGGTTGACCATCTGCGTTACTTTGTTGTCCCTGCTACTTTTTACAGcctgagTAGCATAGccccccatccctccctacatccctccctcctagACAAGGTGTGTCAGTCGGgcgtgtcctctctctctctctcctccaatcagcAAACAGGAGCAGCCAATCAGAAGCAGCCATGTCGGGGTTCAATCTGCTACACCTGATCACCAATGCCAAGCCTGTTACTCTGAAGCCATGTGGGCTCCCTTCAGGAACCTGCCGGACCAAGAAGACATGGCCCAAGTCCTTCTCTCAGGAGGAGCTGAAGAAACGTCTCTCCCCCATTCAGTTCCATGTCACCCAGGAGAAAGGAACAGAGAgTGCCTTCAGAGGGGAATACACTGAATATAAAGAGGATGGCATCTACACCTGTGTCGTCTGTGGCTCCCCGCTGTTCAAGTCCGAGACCAAGTTTGACTCTGGATCAGGTTGGCCTTCCTTCTATGACCTGGTAAAGGAGGAGTCAGTCACTGTAACAGACGATTTCGCCTACGGGATGCACAGAGTTGAGACCAGCTGTAGTCAGtgtggttCTCACCTCGGACACCTGTTTGATGACGGCCCCAGACCCACAGGGAAACGATACTGCATCAACTCTGCCTCTCTGGGCTTCCAGTCCGCCTCAGCCTCTAGGCCACCCAGCAACGGagatggggctggggctgggacaggagctggggctgggacaggggctggggctgggacaggggctggggctgggacaggggctAGGGATGGGGCTGGTGGTGCGGTTGGGGGCAAGACTGAGCTCTGAGTAAAAGGTCTCCTTGGTCTTGGACAGATTTCAGGAATACAGGAAGTACAGGCACGGTCACTCACTCCTTATCCAAACTGGTGGCCTAGGTCCTGGTCGAAATGTTacgaacagaacagagaacagctGGAGAATATAGGTTACACAGAACCCGGAAACATTCAGCCAACTAGGTTACACAGATCCGAAAACGGTCAGACAACTAGGTTACACAGAACCCGAAAACAGTCAGACAACTACAGTCAGCTCAATAAGGGGCCATCGTCACCCCTTAGAAAACATGTGGAACATGATGCCTCTTCTGTGCTCATGTAGGttacacacacccaaacacagtCGGTCAAACACAGTCCGTCAAATGACCCCAGTGGCCATG
>XM_036956680.1
AGACAGGCCAGCGGTGTGTTGTCCGTTTCTCTCGTCTCACTGAGTTGTGTTCACAGCTAATGCACGGACACGGACCGGACCGCCCGTCTGCCAGTGGGTTGACCATCTGCGTTACTTTGTTGTCCCTGCTACTTTTTACAGcTTGGTCTGTCTTTCTCTGATTGTGTGCCTGCCCTGCCATGGCTGTCCTGCTAAGGCGTGTGGGCCGTGTGGCTCTACAGTTCTCCCTGAGACAGACCAGGACCACCCCCCAGAAGGCCCTGCTCATAGCCACTCTTCTAGGAACCTGCCGGACCAAGAAGACATGGCCCAAGTCCTTCTCTCAGGAGGAGCTGAAGAAACGTCTCTCCCCCATTCAGTTCCATGTCACCCAGGAGAAAGGAACAGAGAgTGCCTTCAGAGGGGAATACACTGAATATAAAGAGGATGGCATCTACACCTGTGTCGTCTGTGGCTCCCCGCTGTTCAAGTCCGAGACCAAGTTTGACTCTGGATCAGGTTGGCCTTCCTTCTATGACCTGGTAAAGGAGGAGTCAGTCACTGTAACAGACGATTTCGCCTACGGGATGCACAGAGTTGAGACCAGCTGTAGTCAGtgtggttCTCACCTCGGACACCTGTTTGATGACGGCCCCAGACCCACAGGGAAACGATACTGCATCAACTCTGCCTCTCTGGGCTTCCAGTCCGCCTCAGCCTCTAGGCCACCCAGCAACGGagatggggctggggctgggacaggagctggggctgggacaggggctggggctgggacaggggctggggctgggacaggggctAGGGATGGGGCTGGTGGTGCGGTTGGGGGCAAGACTGAGCTCTGAGTAAAAGGTCTCCTTGGTCTTGGACAGATTTCAGGAATACAGGAAGTACAGGCACGGTCACTCACTCCTTATCCAAACTGGTGGCCTAGGTCCTGGTCGAAATGTTacgaacagaacagagaacagctGGAGAATATAGGTTACACAGAACCCGGAAACATTCAGCCAACTAGGTTACACAGATCCGAAAACGGTCAGACAACTAGGTTACACAGAACCCGAAAACAGTCAGACAACTACAGTCAGCTCAATAAGGGGCCATCGTCACCCCTTAGAAAACATGTGGAACATGATGCCTCTTCTGTGCTCATGTAGGttacacacacccaaacacagtCGGTCAAACACAGTCCGTCAAATGACCCCAGTGGCCATG
>XR_005038478.1
AGACAGGCCAGCGGTGTGTTGTCCGTTTCTCTCGTCTCACTGAGTTGTGTTCACAGCTAATGCACGGACACGGACCGGACCGCCCGTCTGCCAGTGGGTTGACCATCTGCGTTACTTTGTTGTCCCTGCTACTTTTTACAGcTTGGTCTGTCTTTCTCTGATTGTGTGCCTGCCCTGCCATGGCTGTCCTGCTAAGGCGTGTGGGCCGTGTGGCTCTACAGTTCTCCCTGAGACAGACCAGGACCACCCCCCAGAAGGCCCTGCTCATAGCCACTCTTCTAGGAACCTGCCGGACCAAGAAGACATGGCCCAAGTCCTTCTCTCAGGAGGAGCTGAAGAAACGTCTCTCCCCCATTCAGTTCCATGTCACCCAGGAGAAAGGAACAGAGAgTGCCTTCAGAGGGGAATACACTGAATATAAAGAGGATGGCATCTACACCTGTGTCGTCTGTGGCTCCCCGCTGTTCAAGTCCGAGACCAAGTTTGACTCTGGATCAGGTTGGCCTTCCTTCTATGACCTGGTAAAGGAGGAGTCAGTCACTGTAACAGACGATTTCGCCTACGGGATGCACAGAGTTGAGACCAGCTGTAGTCAGtgtggttCTCACCTCGGACACCTGTTTGATGACGGCCCCAGACCCACAGGGAAACGATACTGCATCAACTCTGCCTCTCTGGGCTTCCAGTCCGCCTCAGCCTCTAGGCCACCCAGCAACGGagatggggctggggctgggacaggagctggggctgggacaggggctggggctgggacaggggctggggctgggacaggggctAGGGATGGGGCTGGTGGTGCGGTTGGGGGCAAGACTGAGCTCTGAGTAAAAGGTCTCCTTGGTCTTGGACAGATTTCAGGAATACAGGAAGTACAGGCACGGTCACTCACTCCTTATCCAAACTGGTGGCCTAGGTCCTGGTCGAAATGTTacgaacagaacagagaacagctGGAGAATATAGGTTACACAGATCCGAAAACGGTCAGACAACTAGGTTACACAGAACCCGAAAACAGTCAGACAACTACAGTCAGCTCAATAAGGGGCCATCGTCACCCCTTAGAAAACATGTGGAACATGATGCCTCTTCTGTGCTCATGTAGGttacacacacccaaacacagtCGGTCAAACACAGTCCGTCAAATGACCCCAGTGGCCATG
>XM_036956683.1
GTCTTTCTCTGATTGTGTGCCTGCCCTGCCATGGCTGTCCTGCTAAGGCGTGTGGGCCGTGTGGCTCTACAGTTCTCCCTGAGACAGACCAGGACCACCCCCCAGAAGGCCCTGCTCATAGCCACTCTTCTAGcctgagTAGCATAGccccccatccctccctacatccctccctcctagACAAGGTGTGTCAGTCGGgcgtgtcctctctctctctctcctccaatcagcAAACAGGAGCAGCCAATCAGAAGCAGCCATGTCGGGGTTCAATCTGCTACACCTGATCACCAATGCCAAGCCTGTTACTCTGAAGCCATGTGGGCTCCCTTCAGGAACCTGCCGGACCAAGAAGACATGGCCCAAGTCCTTCTCTCAGGAGGAGCTGAAGAAACGTCTCTCCCCCATTCAGTTCCATGTCACCCAGGAGAAAGGAACAGAGAgTGCCTTCAGAGGGGAATACACTGAATATAAAGAGGATGGCATCTACACCTGTGTCGTCTGTGGCTCCCCGCTGTTCAAGTCCGAGACCAAGTTTGACTCTGGATCAGGTTGGCCTTCCTTCTATGACCTGGTAAAGGAGGAGTCAGTCACTGTAACAGACGATTTCGCCTACGGGATGCACAGAGTTGAGACCAGCTGTAGTCAGtgtggttCTCACCTCGGACACCTGTTTGATGACGGCCCCAGACCCACAGGGAAACGATACTGCATCAACTCTGCCTCTCTGGGCTTCCAGTCCGCCTCAGCCTCTAGGCCACCCAGCAACGGagatggggctggggctgggacaggagctggggctgggacaggggctggggctgggacaggggctggggctgggacaggggctAGGGATGGGGCTGGTGGTGCGGTTGGGGGCAAGACTGAGCTCTGAGTAAAAGGTCTCCTTGGTCTTGGACAGATTTCAGGAATACAGGAAGTACAGGCACGGTCACTCACTCCTTATCCAAACTGGTGGCCTAGGTCCTGGTCGAAATGTTacgaacagaacagagaacagctGGAGAATATAGGTTACACAGAACCCGGAAACATTCAGCCAACTAGGTTACACAGATCCGAAAACGGTCAGACAACTAGGTTACACAGAACCCGAAAACAGTCAGACAACTACAGTCAGCTCAATAAGGGGCCATCGTCACCCCTTAGAAAACATGTGGAACATGATGCCTCTTCTGTGCTCATGTAGGttacacacacccaaacacagtCGGTCAAACACAGTCCGTCAAATGACCCCAGTGGCCATG
>TU1949910
GGTTGGGGGCAAGACTGAGCTCTGAGTAAAAGGTCTCCTTGGTCTTGGACAGATTTCAGGAATACAGGAAGTACAGGCACGGTCACTCACTCCTTATCCAAACTGGTGGCCTAGGTCCTGGTCGAAATGTTacgaacagaacagagaacagctGGAGAATATAGGTTACACAGATCCGAAAACGGTCAGACAACTAGGTTACACAGAACCCGAAAACAGTCAGACAACTACAGTCAGCTCAATAAGGGGCCATCGTCACCCCTTAGAAAACATGTGGAACATGATGCCTCTTCTGTGCTCATGTAGGttacacacacccaaacacagtCGGTCAAACACAGTCCGTCAAATGACCCCAGTGGCCATGTACCAAGCTGGCCCACCTCTGGCTACCAGCCTTAATAAAGTCCCAGGTCTCTACTGTACTATTCAACTGTCTGAGGAGGCACATATTGGATGCAGTTTCACGTTGCTATCATTGCTTTCATACCGTTTACAAGTTTAGATTATATTTTAAAGTATATATATCAActgttatatatttttatttctagtATATTTAAAACTTtatgatttttttggggggaaaaagtgaatgaattatatattattatgATTGTGTGGACTTGACTTTGAAGAACAATGTGTGttgtttaataaataaataaaaagtgatATTTGATACAGAGGGGTTGATAGTTTAAGGACGACGCTCCTATGAGCTGTAAAATAAACACTAAGAGGATAAATAAGCATTCTGTCCAatatggagagacacacacacacacacacactacacacacacatacacacactacacacacactacacacacaaacacactacacaccacacactacacacacacacacacacactacacacacaccatacacacactacacacactacacacacacacacacactacacccacacactacacacacacacataca
>TU1949911
GGTTGGGGGCAAGACTGAGCTCTGAGTAAAAGGTCTCCTTGGTCTTGGACAGATTTCAGGAATACAGGAAGTACAGGCACGGTCACTCACTCCTTATCCAAACTGGTGGCCTAGGTCCTGGTCGAAATGTTacgaacagaacagagaacagctGGAGAATATAGGTTACACAGATCCGAAAACGGTCAGACAACTAGGTTACACAGAACCCGAAAACAGTCAGACAACTACAGTCAGCTCAATAAGGGGCCATCGTCACCCCTTAGAAAACATGTGGAACATGATGCCTCTTCTGTGCTCATGTAGGttacacacacccaaacacagtCGGTCAAACACAGTCCGTCAAATGACCCCAGTGGCCATGTACCAAGCTGGCCCACCTCTGGCTACCAGCCTTAATAAAGTCCCAGGTCTCTACTGTACTATTCAACTGTCTGAGGAGGCACATATTGGATGCAGTTTCACGTTGCTATCATTGCTTTCATACCGTTTACAAGTTTAGATTATATTTTAAAGTATATATATCAActgttatatatttttatttctagtATATTTAAAACTTtatgatttttttggggggaaaaagtgaatgaattatatattattatgATTGTGTGGACTTGACTTTGAAGAACAATGTGTGttgtttaataaataaataaaaagtgatATTTGATACAGAGGGGTTGATAGTTTAAGGACGACGCTCCTATGAGCTGTAAAATAAACACTAAGAGGATAAATAAGCATTCTGTCCAatatggagagacacacacacacacacacaacacacacataca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956681.1 False 1316 mRNA 0.51 6 5611886 5656587
XM_036956682.1 False 1517 mRNA 0.52 7 5611887 5656587
XM_036956680.1 False 1221 mRNA 0.54 7 5612122 5656587
XR_005038478.1 False 1187 mRNA 0.55 8 5612122 5656587
XM_036956683.1 False 1274 mRNA 0.55 7 5627769 5656587
TU1949910 False 959 lncRNA 0.41 2 5656187 5657179
TU1949911 True 806 lncRNA 0.40 3 5656187 5657179

Neighbor

gene id symbol gene type direction distance location
LOC110511233 LOC107655547 coding upstream 13834 5563222 ~ 5598052 (+)
LOC118942839 NA coding upstream 16489 5593681 ~ 5595397 (+)
LOC110491886 tmbim4 coding upstream 138892 5457539 ~ 5472994 (+)
LOC118942836 LOC106576675 coding upstream 195328 5402208 ~ 5416558 (+)
LOC118942835 LOC106576675 coding upstream 261452 5340534 ~ 5350434 (+)
LOC118936346 dera coding downstream 208703 5865290 ~ 5879297 (+)
LOC118942842 LOC106575061 coding downstream 322764 5979351 ~ 5986641 (+)
LOC110527635 LOC106590880 coding downstream 330188 5986775 ~ 5993790 (+)
mrps33 mrps33 coding downstream 571494 6228081 ~ 6252333 (+)
LOC110500907 braf coding downstream 603226 6259813 ~ 6304321 (+)
G1703353 NA non-coding upstream 10193 5554243 ~ 5601693 (+)
G1703369 NA non-coding upstream 22959 5588630 ~ 5588927 (+)
G1703338 NA non-coding upstream 109545 5501699 ~ 5502341 (+)
G1703337 NA non-coding upstream 110769 5499110 ~ 5501117 (+)
G1703291 NA non-coding upstream 117433 5493293 ~ 5494453 (+)
G1703388 NA non-coding downstream 19156 5675743 ~ 5678147 (+)
G1703389 NA non-coding downstream 23479 5680066 ~ 5719953 (+)
G1703401 NA non-coding downstream 56046 5712633 ~ 5714065 (+)
G1703386 NA non-coding downstream 79237 5735824 ~ 5740334 (+)
G1703420 NA non-coding downstream 148599 5805186 ~ 5805425 (+)
G1702856 NA other upstream 357001 5254165 ~ 5254885 (+)
LOC110516940 LOC106609861 other upstream 423039 5182911 ~ 5200193 (+)
G1702793 NA other upstream 557422 5052447 ~ 5054464 (+)
LOC110516816 LOC107655592 other upstream 1210905 4384016 ~ 4441236 (+)
G1703391 NA other downstream 60612 5717199 ~ 5717701 (+)
G1703427 LOC106590880 other downstream 326758 5983345 ~ 5994810 (+)
G1703953 NA other downstream 749445 6406032 ~ 6406773 (+)
LOC118942844 large1 other downstream 1146632 6712920 ~ 6879730 (+)
G1703381 NA non-coding upstream 12066 5642997 ~ 5644121 (+)
G1703379 NA non-coding upstream 13494 5642236 ~ 5642693 (+)
G1702554 NA other upstream 1260672 4394993 ~ 4395515 (+)

Expression


Co-expression Network