LOC118942843


Basic Information

Item Value
gene id LOC118942843
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5950034 ~ 5963423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038480.1
ttttaattaatcaattttagaataaggctgtaacataacaaaatatggtacatgtcaaaggggtctgaatacttgtccGAATGCCTCGTATATTCCTCTCCTATGTACTGGATGTGTCAATAAGATAACAAGATGGAAAGGaaggggaatagagagatggaggtgtggaggtgtgGTGTGATTCATGGATGTGTCAATACGATGGAAAGGAAGGGcaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATACGATGGAAAGGAAGGGcaatagagagatggaggtgtggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATAACAAGATGGGaaggaggggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATGGAAAGGAAGgggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATACGATGGAAAGGAAGGGcaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGA
>XR_005038481.1
ttttaattaatcaattttagaataaggctgtaacataacaaaatatggtacatgtcaaaggggtctgaatacttgtccGAATGCCTCGTATATTCCTCTCCTATGTACTGGATGTGTCAATAAGATAACAAGATGGAAAGGaaggggaatagagagatggaggtgtggaggtgtgGTGTGATTCATGGATGTGTCAATACGATGGAAAGGAAGGGcaatagagagatggaggtgtggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATAACAAGATGGGaaggaggggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATGGAAAGGAAGgggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATACGATGGAAAGGAAGGGcaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGA
>XR_005038482.1
ttttaattaatcaattttagaataaggctgtaacataacaaaatatggtacatgtcaaaggggtctgaatacttgtccGAATGCCTCGTATATTCCTCTCCTATGTACTGGATGTGTCAATAAGATAACAAGATGGAAAGGaaggggaatagagagatggaggtgtggaggtgtgGTGTGATTCATGGATGTGTCAATACGATGGAAAGGAAGGGcaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATAACAAGATGGGaaggaggggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATGGAAAGGAAGgggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATACGATGGAAAGGAAGGGcaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGA
>XR_005038483.1
ttttaattaatcaattttagaataaggctgtaacataacaaaatatggtacatgtcaaaggggtctgaatacttgtccGAATGCCTCGTATATTCCTCTCCTATGTACTGGATGTGTCAATAAGATAACAAGATGGAAAGGaaggggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATACGATGGAAAGGAAGGGcaatagagagatggaggtgtggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATAACAAGATGGGaaggaggggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATGGAAAGGAAGgggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATACGATGGAAAGGAAGGGcaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGA
>XR_005038484.1
ttttaattaatcaattttagaataaggctgtaacataacaaaatatggtacatgtcaaaggggtctgaatacttgtccGAATGCCTCGTATATTCCTCTCCTATGTACTGGATGTGTCAATAAGATAACAAGATGGAAAGGaaggggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATAACAAGATGGGaaggaggggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATGGAAAGGAAGgggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATACGATGGAAAGGAAGGGcaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGA
>TU1950463
tgatgtcattatggggtattgtgtatagattgatgagggaaaatgttttaattaatcaattttagaataaggctgtaacataacaaaatatggtacatgtcaaaggggtctgaatacttgtccGAATGCCTCGTATATTCCTCTCCTATGTACTGGATGTGTCAATAAGATAACAAGATGGAAAGGaaggggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATGGAAAGGAAGgggaatagagagatggagGTGTGGTGTGATTCATGGATGTGTCAATAAGATAACAAGATGGAAAGGaaggggaatagagagatggaggtgtggaggtgtgGTGTGATTCACGGCCTGCTCAAAGAGCACCGAGTGGAATAATTGTTTCGCAATGGGAAATCTCGAAGGAGCCCCTCACACAACTCGTTGGAAGTGTTCAGAGGCTTTTGAATGCGAGTGCTGACATTGGAAGAACTCAAGGgcgtggaagggagggaggaagggagtaaATGGGGGGGATGAATGAAGAAAGATGGAGCCGAGGGAGGAAGGGAGTAAAGGTGGGGGGTGAATGATGAAAGATGGAGCTGCAGTGCATTCTCTTCAGACGTTATAAGCAGCGATAGCTGCTTTCAAGACTGAACGTTTGAGGGAATAAACGGACGGTGAGTCTTTTAACGTGTCAAGAACACCGGATTTTGCCAACTTCAGGAGATCGTTGTAAACCGAGACACTGGAAACTGCTAGAATATCAGCTAGATAAACCTAGCTGTTTCTTTGAGTAAGAACTAgtcgtgagagagagagagagagaggacaagacgagagagagaga
>TU1950464
gtgccttttactgaggagtggcatccgtctggcctctctaccataaaggcctaattggtggagtgctgcagagatggttctccttctggaaggttctcccatctcctcagaggaactctggagctctgtcagagtgaccatctggttctttgtcacctccctgaccaaggcccttctcccccgattgctcagtttggccgggcgaccagctataggaagagtcttcgtggttccaaacttcttccatttaagaatgatggaggccactgtgatcttgggaaccttcaatgctgaagaaatgttttggtgtccttccccagatctgtgcctcgacacaatcctgtctcggagctctacggacaattcctcggacatcatggcttgattttgctctgacatgcactgtcaactgtgggaccttacaggtgtgtgcctttccaaatcatgtccaatcaattgaatttaccacaggtggactccaatcaagttgtagtatgtaaataagatatttttgttttctatttttaataaatttgctgcgtcattatggggtattgtgatgtcattatggggtattgtgatgtcattatggggtattgtgatgtcattatggggtattgtgtatagattgatgagggaaaatgttttaattaatcaattttagaataaggctgtaacataacaaaatatggtacatgtcaaaggggtctgaatacttgtccGAATGCCTCGTATATTCCTCTCCTATGTACTGGATGTGTCAATAAGATAACAAGATGGAAAGGaaggggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATAACAAGATGGGaaggaggggaatagagagatggaggtgtggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATAACAAGATGGAAAGGaaggggaatagagagatggaggtgtgGTGTGATTCACGGCCTGCTCAAAGAGCACCGAGTGGAATAATTGTTTCGCAATGGGAAATCTCGAAGGAGCCCCTCACACAACTCGTTGGAAGTGTTCAGAGGCTTTTGAATGCGAGTGCTGACATTGGAAGAACTCAAGGgcgtggaagggagggaggaagggagtaaATGGGGGGGATGAATGAAGAAAGATGGAGCCGAGGGAGGAAGGGAGTAAAGGTGGGGGGTGAATGATGAAAGATGGAGCTGCAGTGCATTCTCTTCAGACGTTATAAGCAGCGATAGCTGCTTTCAAGACTGAACGTTTGAGGGAATAAACGGACGGTGAGTCTTTTAACGTGTCAAGAACACCGGATTTTGCCAACTTCAGGAGATCGTTGTAAACCGAGACACTGGAAACTGCTAGAATATCAGCTAGATAAACCTAGCTGTTTCTTTGAGTAAGAACTAgtcgtgagagagagagagagagaggacaagacgagagagagaga
>TU1950465
tgatgtcattatggggtattgtgtatagattgatgagggaaaatgttttaattaatcaattttagaataaggctgtaacataacaaaatatggtacatgtcaaaggggtctgaatacttgtccGAATGCCTCGTATATTCCTCTCCTATGTACTGGATGTGTCAATAAGATAACAAGATGGAAAGGaaggggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATGGAAAGGAAGGGcaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATGGAAAGGAAGGgcaatagagagatggaggagtggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATGGAAAGGAAGGgcaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATAACAAGATGGAAAGGaaggggaatagagagatggaggtgtgGTGTGATTCACGGCCTGCTCAAAGAGCACCGAGTGGAATAATTGTTTCGCAATGGGAAATCTCGAAGGAGCCCCTCACACAACTCGTTGGAAGTGTTCAGAGGCTTTTGAATGCGAGTGCTGACATTGGAAGAACTCAAGGgcgtggaagggagggaggaagggagtaaATGGGGGGGATGAATGAAGAAAGATGGAGCCGAGGGAGGAAGGGAGTAAAGGTGGGGGGTGAATGATGAAAGATGGAGCTGCAGTGCATTCTCTTCAGACGTTATAAGCAGCGATAGCTGCTTTCAAGACTGAACGTTTGAGGGAATAAACGGACGGTGAGTCTTTTAACGTGTCAAGAACACCGGATTTTGCCAACTTCAGGAGATCGTTGTAAACCGAGACACTGGAAACTGCTAGAATATCAGCTAGATAAACCTAGCTGTTTCTTTGAGTAAGAACTAgtcgtgagagagagagagagagaggacaagacgagagagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038480.1 False 522 mRNA 0.43 2 5950870 5951611
XR_005038481.1 False 461 mRNA 0.42 3 5950870 5951611
XR_005038482.1 False 453 mRNA 0.42 3 5950870 5951611
XR_005038483.1 False 453 mRNA 0.42 3 5950870 5951611
XR_005038484.1 False 384 mRNA 0.41 3 5950870 5951611
TU1950463 False 845 lncRNA 0.44 4 5950034 5951656
TU1950464 False 1451 TUCP 0.45 5 5950034 5963423
TU1950465 True 967 lncRNA 0.44 5 5950034 5951656

Neighbor

gene id symbol gene type direction distance location
LOC118942841 NA coding downstream 128580 5687945 ~ 5822290 (-)
LOC118942840 NA coding downstream 264654 5652498 ~ 5686229 (-)
LOC110511232 wif1 coding downstream 389447 5496219 ~ 5561423 (-)
vhll NA coding downstream 469971 5478445 ~ 5480899 (-)
LOC110491889 b2m coding downstream 494515 5452948 ~ 5456355 (-)
LOC110499738 lmo3 coding upstream 115524 6067135 ~ 6188810 (-)
LOC118942797 NA coding upstream 566277 6517888 ~ 6518853 (-)
LOC118942845 LOC106590959 coding upstream 938912 6890523 ~ 6917536 (-)
LOC118942846 LOC105029310 coding upstream 1097285 7048896 ~ 7050907 (-)
LOC118942847 LOC106593057 coding upstream 1351994 7303605 ~ 7307397 (-)
G1703667 NA non-coding downstream 38158 5912485 ~ 5912712 (-)
G1703666 NA non-coding downstream 39507 5910985 ~ 5911363 (-)
G1703664 NA non-coding downstream 42505 5907890 ~ 5908365 (-)
G1703662 NA non-coding downstream 43945 5906617 ~ 5906925 (-)
G1703661 NA non-coding downstream 44484 5906133 ~ 5906386 (-)
G1703703 NA non-coding upstream 21755 5973366 ~ 5974885 (-)
G1703670 NA non-coding upstream 27844 5979455 ~ 5984055 (-)
G1703704 NA non-coding upstream 29264 5980875 ~ 5983010 (-)
G1703669 NA non-coding upstream 32754 5984365 ~ 5996426 (-)
G1703717 NA non-coding upstream 68349 6019960 ~ 6020452 (-)
G1703658 NA other downstream 51089 5899342 ~ 5899781 (-)
G1703323 NA other downstream 520698 5429468 ~ 5430889 (-)
LOC118942837 b2mg other downstream 524278 5420336 ~ 5426626 (-)
LOC118942834 LOC106576655 other downstream 637897 5236240 ~ 5313033 (-)
G1703878 NA other upstream 353942 6305553 ~ 6308220 (-)
G1703896 NA other upstream 391130 6342741 ~ 6343182 (-)
G1704098 NA other upstream 749287 6700898 ~ 6705845 (-)
G1704410 NA other upstream 1197954 7149565 ~ 7149979 (-)

Expression


Co-expression Network