LOC110499738 (lmo3)


Basic Information

Item Value
gene id LOC110499738
gene name lmo3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6067135 ~ 6188810 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956695.1
gagagggagagagagagaggagatttgTAGGAATGACTTTTAGATCCATGGCTTCATgTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATTAAGGACCGATATCTGCTCAAGGCCCTGGATAAATACTGGCACGAGGACTGTCTCAAGTGTGCCTGCTGTGACTGCAGGCTGGGAGAGGTGGGCTCCACGCTCTATACCAAAGCCAACCTCATCCTCTGTCGGAGAGATTACCTACGGTTGTTTGGGGTAACAGGGAACTGTGCGGCCTGCAGTAAGCTGATCCCAGCCTTTGAGATGGTGATGAGAGCTAAAGAGAACGTCTATCACCTGGACTGCTTCGCCTGTCAGCTCTGTAATCAGAGgtTTTGTGTGGGAGATAAGTTCTTCCTGAAGAACAATATGATCCTGTGTCAGACGGACTACGAGGAGGGGCTGATGAAGGAGGGATACGCCCCGCAGGTTCGCTGACTACAGatgaagagcagagagagagagagggggggggggggggggtgatg
>XM_036956694.1
TTAGGAGATTAGGGCGCCGCGAAGGGGGGAAGCATATGCCTTTGTCATCTGCTGTCATTTTGTTCGCTGCCTGTCACTCGCCAAGCACCCTGCgactgtgtgctgtgtgctgcctgGACGATTTCATTTCATAGTCGAGCACTGTTGTGACAAACGCGGTTTTACATCACCGTGTGGCGCTGGGTGATAGCGGACccgtgattctctctctctcgcgctccttTTTTTTCCCCATTCTGTGTTTGTGCGCGCGGACGAGGTGGGATTGTTACACATAACAAAAGATAGCCACCCTCGGTGAGAAAACGGAACGTGCGTGCATACAGCTGGCTGATTGCTCACTTGGCCATAgagagataatccatccatcggGTGAATTTAGGATTCTGGGTTCGGACGGATCTCTTGTTGCATGGTGGTTCGGGCTCCCGACGAGGGTCAACAAATGCAGAAAGGGGAGAAAAGTTTCGgTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATTAAGGACCGATATCTGCTCAAGGCCCTGGATAAATACTGGCACGAGGACTGTCTCAAGTGTGCCTGCTGTGACTGCAGGCTGGGAGAGGTGGGCTCCACGCTCTATACCAAAGCCAACCTCATCCTCTGTCGGAGAGATTACCTACGGTTGTTTGGGGTAACAGGGAACTGTGCGGCCTGCAGTAAGCTGATCCCAGCCTTTGAGATGGTGATGAGAGCTAAAGAGAACGTCTATCACCTGGACTGCTTCGCCTGTCAGCTCTGTAATCAGAGgtTTTGTGTGGGAGATAAGTTCTTCCTGAAGAACAATATGATCCTGTGTCAGACGGACTACGAGGAGGGGCTGATGAAGGAGGGATACGCCCCGCAGGTTCGCTGACTACAGatgaagagcagagagagagagagggggggggggggggggtgatg
>XM_036956698.1
ttctcctctctcagtCTCACTCACTGATGCGCGGGAAGTGACCCTCAGCCAGAGAGGAGGTGATATAGCCTCGACTACCGACGCAGCTCTGCTCGGCGCTCGGCAGCGGATATACAGTGAACAAAACACCTGTagtctttttgtttgtttgtttgtttgttgttgtctgTACCCAACGGCCTCTTCTCGGTTCGTTCGTGATCTGATGATCCATGAGGACCTGATTATTTCAAGACTGCTGAACATCACTCCAATCTCTAGTCCGTCGCGTCGCCATGTCAGTTTGGTGAACTTTACGCAAACgagaggatatatatatatatatatatatatatatatacagctgGAGTGTTGAAGGGCGGGGGTGCCTGATCTGAAGTTAGCCGTCTGTTCTGCGTAACTCGGGCTTTTAGAAAGgTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATTAAGGACCGATATCTGCTCAAGGCCCTGGATAAATACTGGCACGAGGACTGTCTCAAGTGTGCCTGCTGTGACTGCAGGCTGGGAGAGGTGGGCTCCACGCTCTATACCAAAGCCAACCTCATCCTCTGTCGGAGAGATTACCTACGGTTGTTTGGGGTAACAGGGAACTGTGCGGCCTGCAGTAAGCTGATCCCAGCCTTTGAGATGGTGATGAGAGCTAAAGAGAACGTCTATCACCTGGACTGCTTCGCCTGTCAGCTCTGTAATCAGAGgtTTTGTGTGGGAGATAAGTTCTTCCTGAAGAACAATATGATCCTGTGTCAGACGGACTACGAGGAGGGGCTGATGAAGGAGGGATACGCCCCGCAGGTTCGCTGACTACAGatgaagagcagagagagagagagggggggggggggggggtgatg
>XM_036956697.1
ctctctctcttcatatttTTCCTTCGACCCTCTTACACGGATGGACTAAAACGACTCCCTGCTTTAAATTGGCTGATTATGAAGATAGGACCGCTTTGAAATAATTCAATCCATGACAAAAGgTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATTAAGGACCGATATCTGCTCAAGGCCCTGGATAAATACTGGCACGAGGACTGTCTCAAGTGTGCCTGCTGTGACTGCAGGCTGGGAGAGGTGGGCTCCACGCTCTATACCAAAGCCAACCTCATCCTCTGTCGGAGAGATTACCTACGGTTGTTTGGGGTAACAGGGAACTGTGCGGCCTGCAGTAAGCTGATCCCAGCCTTTGAGATGGTGATGAGAGCTAAAGAGAACGTCTATCACCTGGACTGCTTCGCCTGTCAGCTCTGTAATCAGAGgtTTTGTGTGGGAGATAAGTTCTTCCTGAAGAACAATATGATCCTGTGTCAGACGGACTACGAGGAGGGGCTGATGAAGGAGGGATACGCCCCGCAGGTTCGCTGACTACAGatgaagagcagagagagagagagggggggggggggggggtgatg
>XM_036956696.1
ggaagagagagggaggaaactatcagggaaggaagagagagggaggaaactatcagggaaggaaggaaaggaaaagagagggaatAGAAGAAACAGACATTGCGAGATAAaacaaagagagaagagaagaaccgtggagacagagagagtgagaccagggaggacgacagagagagagaccagggaggacgacagagaaagagagcgaccagggaggacgacagagagagggggagagagagcgcaaggGAGTTGAGTTGAGACAGGTGGTGCTTTTTCATCCAAGCCGCTGTGAAAAGAGGGGCGGCTATTGGCTACAATTGTGCCAACAACTCGCAGCATCAAGGACAACTTTTTCCCTCGTAGGCTACAGTGGGTTTTTTTTTTTGCGCTACTTCTTACTCACGCACTCAGCCTTTTTAACAGAACAGGCTAAGTATAAAGGACTATACAAATAGTGGACACGTTTTGTTTTCAATGTAACACTCAACAGAAAACAGGCAAGAGATTAAACTGCCAACCTTCGACTGGTAATATTTTTTTTACGCATGAGCATCCCTCTGAAAGAAGgTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATTAAGGACCGATATCTGCTCAAGGCCCTGGATAAATACTGGCACGAGGACTGTCTCAAGTGTGCCTGCTGTGACTGCAGGCTGGGAGAGGTGGGCTCCACGCTCTATACCAAAGCCAACCTCATCCTCTGTCGGAGAGATTACCTACGGTTGTTTGGGGTAACAGGGAACTGTGCGGCCTGCAGTAAGCTGATCCCAGCCTTTGAGATGGTGATGAGAGCTAAAGAGAACGTCTATCACCTGGACTGCTTCGCCTGTCAGCTCTGTAATCAGAGgtTTTGTGTGGGAGATAAGTTCTTCCTGAAGAACAATATGATCCTGTGTCAGACGGACTACGAGGAGGGGCTGATGAAGGAGGGATACGCCCCGCAGGTTCGCTGACTACAGatgaagagcagagagagagagagggggggggggggggggtgatg

Function

symbol description
lmo3 Predicted to enable metal ion binding activity. Is expressed in basal plate midbrain region; nervous system; neural plate; notochord; and presumptive diencephalon. Orthologous to human LMO3 (LIM domain only 3).

NR:

description
PREDICTED: LIM domain only protein 3 isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24098 LMO1_3; rhombotin-1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956695.1 False 553 mRNA 0.54 4 6067135 6177614
XM_036956694.1 False 966 mRNA 0.54 4 6067135 6183123
XM_036956698.1 False 913 mRNA 0.51 4 6067135 6184666
XM_036956697.1 False 618 mRNA 0.52 4 6067135 6187073
XM_036956696.1 True 1066 mRNA 0.50 4 6067135 6188810

Neighbor

gene id symbol gene type direction distance location
LOC118942843 NA coding downstream 115524 5950034 ~ 5963423 (-)
LOC118942841 NA coding downstream 244845 5687945 ~ 5822290 (-)
LOC118942840 NA coding downstream 380919 5652498 ~ 5686229 (-)
LOC110511232 wif1 coding downstream 505712 5496219 ~ 5561423 (-)
vhll NA coding downstream 586236 5478445 ~ 5480899 (-)
LOC118942797 NA coding upstream 329078 6517888 ~ 6518853 (-)
LOC118942845 LOC106590959 coding upstream 701713 6890523 ~ 6917536 (-)
LOC118942846 LOC105029310 coding upstream 860086 7048896 ~ 7050907 (-)
LOC118942847 LOC106593057 coding upstream 1114795 7303605 ~ 7307397 (-)
LOC118942848 LOC106594098 coding upstream 1191769 7379889 ~ 7384439 (-)
G1703675 NA non-coding downstream 698 6053638 ~ 6066437 (-)
G1703674 NA non-coding downstream 1529 6064401 ~ 6065606 (-)
G1703725 NA non-coding downstream 25412 6039112 ~ 6041723 (-)
G1703717 NA non-coding downstream 46683 6019960 ~ 6020452 (-)
G1703669 NA non-coding downstream 70709 5984365 ~ 5996426 (-)
G1703794 NA non-coding upstream 13655 6202465 ~ 6226957 (-)
G1703805 NA non-coding upstream 39319 6228129 ~ 6228507 (-)
G1703812 NA non-coding upstream 62525 6251335 ~ 6252327 (-)
G1703851 NA non-coding upstream 67102 6255912 ~ 6256980 (-)
G1703852 NA non-coding upstream 68616 6257426 ~ 6258382 (-)
G1703658 NA other downstream 167354 5899342 ~ 5899781 (-)
LOC110491889 b2m other downstream 611024 5452948 ~ 5456355 (-)
G1703323 NA other downstream 636963 5429468 ~ 5430889 (-)
G1703878 NA other upstream 116743 6305553 ~ 6308220 (-)
G1703896 NA other upstream 153931 6342741 ~ 6343182 (-)
G1704098 NA other upstream 512088 6700898 ~ 6705845 (-)
G1704410 NA other upstream 960755 7149565 ~ 7149979 (-)
G1704412 NA other upstream 967880 7156690 ~ 7157057 (-)

Expression


Co-expression Network