LOC118942797


Basic Information

Item Value
gene id LOC118942797
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6517888 ~ 6518853 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038446.1
TGCATGACATCATCAGTCTGTTATAGGTACGATCTGTGTTGATCAGAGGACTTCCTGTATGACATCATCAGTCTGTTATAGGTACGATCTGTGTTGATCAGAGGACTTCCTGTATGACATCATCAGTTTGTTATAGGTACGATCTGTGTTGATCAGAGGACTTCCTGTATGACATCATCAGTCTGTTATAGGTAAGATCTGTGTTGATCAGAGTACTTCCTgtatgacatcatcagtctattATAGGTACGATCTGTGTTGATCAGAGGACTTCCTGTATGACATCATCAGTCTGTTATAGGTACGATCTGTGTTGATCAGAGGACTTCCTGTATGACATCATCAGTTTGTTATAGGTACGATCTGTGTTG
>TU1950934
ACTTCCTGTATGACATCATCAGTCTGTTATAGGTACGATCTGTGTTGATCAGAGGACTTCCTGTATGACATCATCAGTCTGTTATAGGTACGATCTGTGTTGATCAGAGGACTTCCTGTATGACATCATCAGTCTGTTATAGGTACGATCTGTGTTGATCTGTGTGACATCATCCGTCTGTTATAGGTACGATCTGTGTTGATCAGAGGACTTCCTGTATGACAT
>TU1950935
cagatgctcttatccagagcgacactCAACTCATAAACGGAAGCAAATCACCCTGCGTTTAGTGTCAATTACAAAGGAAACCACAGAATGTTTGGCTTTCCATGTGAATACAATGCTCCTCAGACACAGATAAGCTAGCCTGGTCAAACACCAGAGAACACAATGTTCATCTGACACAGATAAGTTAGCCTGGTCAAACACCAGAGAACACAATGTTCATCAGACACAGATAAGTTAGCCTGGTCAAACACCAGAGAACACAATGTTCATCAGACACAGATAAGTTAGCCTGGTCAAACACATGACATCATCAGTCTGTTATAGGTACGATCTGTGTTGATCAGAGGATTTCCTGTATGACATCATCAGTCTGTTATAGGTACGATCTGTGTTGATCAGAGGACTTCCTGTATGACATCATCAGTCTGTTATAGGTACGATCTGTGTTGATCAGAGGACTTCCTGTATGACATCATCAGTCTGTTATAGGTACGATCTGTGTTGATCAGAGGACTTCCTGTATGACATCATCAGTCTGTTATAGGTACGATCTGTGTTGATCTGTGTGACATCATCCGTCTGTTATAGGTACGATCTGTGTTGATCAGAGGACTTCCTGTATGACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038446.1 False 371 mRNA 0.40 3 6517888 6518346
TU1950934 False 225 lncRNA 0.42 3 6517919 6518462
TU1950935 True 627 lncRNA 0.42 5 6517919 6518853

Neighbor

gene id symbol gene type direction distance location
LOC110499738 lmo3 coding downstream 329078 6067135 ~ 6188810 (-)
LOC118942843 NA coding downstream 566277 5950034 ~ 5963423 (-)
LOC118942841 NA coding downstream 695598 5687945 ~ 5822290 (-)
LOC118942840 NA coding downstream 831672 5652498 ~ 5686229 (-)
LOC110511232 wif1 coding downstream 956465 5496219 ~ 5561423 (-)
LOC118942845 LOC106590959 coding upstream 372177 6890523 ~ 6917536 (-)
LOC118942846 LOC105029310 coding upstream 530550 7048896 ~ 7050907 (-)
LOC118942847 LOC106593057 coding upstream 785259 7303605 ~ 7307397 (-)
LOC118942848 LOC106594098 coding upstream 862233 7379889 ~ 7384439 (-)
LOC118936572 LOC108250668 coding upstream 1072182 7585971 ~ 7768303 (-)
G1704014 NA non-coding downstream 13586 6504055 ~ 6504302 (-)
G1704008 NA non-coding downstream 36834 6480163 ~ 6481054 (-)
G1703992 NA non-coding downstream 71377 6435512 ~ 6446511 (-)
G1703964 NA non-coding downstream 100996 6416420 ~ 6416892 (-)
G1703957 LOC106581475 non-coding downstream 108962 6408654 ~ 6408926 (-)
G1704025 NA non-coding upstream 21133 6539479 ~ 6540097 (-)
G1704027 NA non-coding upstream 26677 6545023 ~ 6545224 (-)
G1704033 NA non-coding upstream 34194 6552540 ~ 6552767 (-)
G1704035 NA non-coding upstream 40991 6559337 ~ 6562776 (-)
G1704041 NA non-coding upstream 50593 6568939 ~ 6569304 (-)
G1703896 NA other downstream 174706 6342741 ~ 6343182 (-)
G1703878 NA other downstream 209668 6305553 ~ 6308220 (-)
G1703669 NA other downstream 521462 5984365 ~ 5996426 (-)
G1703658 NA other downstream 618107 5899342 ~ 5899781 (-)
G1704098 NA other upstream 182552 6700898 ~ 6705845 (-)
G1704410 NA other upstream 631219 7149565 ~ 7149979 (-)
G1704412 NA other upstream 638344 7156690 ~ 7157057 (-)
G1704702 NA other upstream 779579 7297925 ~ 7299086 (-)
G1704700 NA other upstream 780854 7299200 ~ 7301845 (-)

Expression


Co-expression Network