LOC118942845 (LOC106590959)


Basic Information

Item Value
gene id LOC118942845
gene name LOC106590959
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6890523 ~ 6917536 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956706.1
TttttttgtgtcatttagaggAAAAATGCATTTTAGCGTTTGAGTCACTTCATCAAAAGTTGCTAaaaaaaatagtattttttttttaagtagctaaatttgttgctaggtgcagttggattttttttgttgctagggtactctgaaaagttgctaaatctagcaacaaaattgctaCGTTGGCATCACTGATCTCAATACTGCCGGTTGATGAGACGGTTGGAGCCTCTTTACCGCGGTTCATGTAGCCACATCCTACACGAAAAACCACACACACTATAGATCACTTTCCATAACAACTCAACAGAAAACGTGGACAGTTTGTTAACATACATTTATAAAGGATTTCAAAAAGATCAGGTATGTCCAGACGAGGTTGTACCGATCCGACCGGGCTCCGGAGGAAACGGGACATGGAGGAGCACCAGAAGGAGAGAAGACGGGCTCTGCAGGCCCGACACCGGGCCAACCTGGCCACCCTGTTCGAGACACTCAACACCGTGGTCTGCCCCACATCCAACAAGATGCCTGCTAAGTGGAAGATCTTGGACCACGCCAAAGGATTTCTGAAAGAACAGGAAGCCCACCTGAGCAGACTGATGCTCCTGAAAGGGATATTCCTCGGTAATGAAGACGGGCCGTGCAGCTTGGAGGAAGTGAGGGCAGAGTACCGGAGGCTGCAGTCACACAGCAGAAGACCTGGTGGCTTCAGACGTCATGGCGGGGATGACGGAGAGGACCTGACTGAGACCAGTGAGGAAGACTCTGCAGAGGAGACTCTGGATGACTCCGCCCCCTCTCAGACCTCCATCAACTCTCTAACCAACATCCTGGAGTTTGAAGGGTACTTGTTGTtctacagacagacactggagAAGTTGGTTTGTAGCGGTGTGCTGAGCCCGGGACAGACTGGTCTGGCTGTAGTATCTGAAGCTATCTCAGGCCTGTGGGATAGCTTCTCTCCAGAGCGCCGGGCAGCCTACCAGACCTGTCCCCCCCAGCAGAGCACCCTGGGCTGGGAAGGGCCGGCAGAGACACCCCCTAATCCTGTTCCAGACACCCACCTCCACCTCACGCTCCAGCCCTCCACTCAGGCAAACAGCCAGGGAGCCTCTTCTCCTTCTAGCTATGAAGAGGACCTGCTTCAGGATGCCTATGATGTGGTGAAGAAAGAGATGGACTCCACTTCAGACCACAGtccTGTCCCGGCCTCTCCTCAGTGTGGGGACTTTGACAAGCTCCGGGAGATCTATAAGGACATCATGTGTTTCGTCAAGACTCAGATGGTGGagaaaccagaacataaccaggacgTGTGTCTGTCTGCTATGAGGGACCACGAGGAGATCTTTCTCCAGTGCTCCGAGTCCTTCGACAGTGAGGACATGtgaatcacaggaggctgctgacggAAGGACGGCTCATAGAAATGTCCGGAAACGAAGCAAACGGAATGACATTAaacaccatggaaaccatgtgtgatgtatttaataccgtTCCACCGATTCCGCTCCTGTCATTACCCACAAGCCTGTTCACCAACTTCctgtttctgggaccaatcagaacagttagaatgtgtttgatatatttaataccgttctccccaattaacctgttaaccaacttcctgtttctgggaccaatcagaatgtGTTTGATATATTTAATACGGTTCCACTGATTCAGCTCCAGTCATTACCCAcaagcctgttctccccaattaacctgttaaccaacttcctgtttctgggaccaatcagaatgtGTTTGATATATTTAATACCGTTCCACTGATTCAGCTCCAGTCATTACCCACAAGCCTGTTCTCCTCAATGAACCTGTTCACCAACTTCCTGTCATGTGAACACCTATTCGTTGTACAAGTGTTTGTTCCTGTTGACATGAAAGACACATTGTGTTGCTTTGTTATGGACTTGATAAATGATCACGTTTCgggatttgtttttataaatgttcaGCTTTTCCACTCGTTTATAGTTACAGACATGTTTTATAATCTgacattcatgtttctatgtgCTGTTTTATAATCTGGTTCTGAGGCAAATCATTCATCCGTTTGTATTCGATGATCATTGTTCAGCCGTTTTAACCCATTAAGAATCAGCATTGAGTCCAGCCAGTCTTTCTCTGTGTATTAAACCTCAGCCTCAGAGAGGGATGGTGGTCTCACAGTGtccagcagtggttcccaaaccaaGGGTCGCGACCCCCGTGTGGGGACGGACGCCTGATGTGAAAACGAGGTTGCGGAAGAATTTCcccaaaaaatcctgaaaataacattttaaaaaataaaacacatttttaaaaata
>XM_036956707.1
TttttttgtgtcatttagaggAAAAATGCATTTTAGCGTTTGAGTCACTTCATCAAAAGTTGCTAaaaaaaatagtattttttttttaagtagctaaatttgttgctaggtgcagttggattttttttgttgctagggtactctgaaaagttgctaaatctagcaacaaaattgctaCGTTGGCATCACTGATCTCAATACTGCCGGTTGATGAGACGGTTGGAGCCTCTTTACCGCGGTTCATGTAGCCACATCCTACACGAAAAACCACACACACTATAGATCACTTTCCATAACAACTCAACAGAAAACGTGGACAGTTTGTTAACATACATTTATAAAGGATTTCAAAAAGATCAGGTATGTCCAGACGAGGTTGTACCGATCCGACCGGGCTCCGGAGGAAACGGGACATGGAGGAGCACCAGAAGGAGAGAAGACGGGCTCTGCAGGCCCGACACCGGGCCAACCTGGCCACCCTGTTCGAGACACTCAACACCGTGGTCTGCCCCACATCCAACAAGATGCCTGCTAAGTGGAAGATCTTGGACCACGCCAAAGGATTTCTGAAAGAACAGGAAGCCCACCTGAGCAGACTGATGCTCCTGAAAGGGATATTCCTCGGTAATGAAGACGGGCCGTGCAGCTTGGAGGAAGTGAGGGCAGAGTACCGGAGGCTGCAGTCACACAGCAGACCTGGTGGCTTCAGACGTCATGGCGGGGATGACGGAGAGGACCTGACTGAGACCAGTGAGGAAGACTCTGCAGAGGAGACTCTGGATGACTCCGCCCCCTCTCAGACCTCCATCAACTCTCTAACCAACATCCTGGAGTTTGAAGGGTACTTGTTGTtctacagacagacactggagAAGTTGGTTTGTAGCGGTGTGCTGAGCCCGGGACAGACTGGTCTGGCTGTAGTATCTGAAGCTATCTCAGGCCTGTGGGATAGCTTCTCTCCAGAGCGCCGGGCAGCCTACCAGACCTGTCCCCCCCAGCAGAGCACCCTGGGCTGGGAAGGGCCGGCAGAGACACCCCCTAATCCTGTTCCAGACACCCACCTCCACCTCACGCTCCAGCCCTCCACTCAGGCAAACAGCCAGGGAGCCTCTTCTCCTTCTAGCTATGAAGAGGACCTGCTTCAGGATGCCTATGATGTGGTGAAGAAAGAGATGGACTCCACTTCAGACCACAGtccTGTCCCGGCCTCTCCTCAGTGTGGGGACTTTGACAAGCTCCGGGAGATCTATAAGGACATCATGTGTTTCGTCAAGACTCAGATGGTGGagaaaccagaacataaccaggacgTGTGTCTGTCTGCTATGAGGGACCACGAGGAGATCTTTCTCCAGTGCTCCGAGTCCTTCGACAGTGAGGACATGtgaatcacaggaggctgctgacggAAGGACGGCTCATAGAAATGTCCGGAAACGAAGCAAACGGAATGACATTAaacaccatggaaaccatgtgtgatgtatttaataccgtTCCACCGATTCCGCTCCTGTCATTACCCACAAGCCTGTTCACCAACTTCctgtttctgggaccaatcagaacagttagaatgtgtttgatatatttaataccgttctccccaattaacctgttaaccaacttcctgtttctgggaccaatcagaatgtGTTTGATATATTTAATACGGTTCCACTGATTCAGCTCCAGTCATTACCCAcaagcctgttctccccaattaacctgttaaccaacttcctgtttctgggaccaatcagaatgtGTTTGATATATTTAATACCGTTCCACTGATTCAGCTCCAGTCATTACCCACAAGCCTGTTCTCCTCAATGAACCTGTTCACCAACTTCCTGTCATGTGAACACCTATTCGTTGTACAAGTGTTTGTTCCTGTTGACATGAAAGACACATTGTGTTGCTTTGTTATGGACTTGATAAATGATCACGTTTCgggatttgtttttataaatgttcaGCTTTTCCACTCGTTTATAGTTACAGACATGTTTTATAATCTgacattcatgtttctatgtgCTGTTTTATAATCTGGTTCTGAGGCAAATCATTCATCCGTTTGTATTCGATGATCATTGTTCAGCCGTTTTAACCCATTAAGAATCAGCATTGAGTCCAGCCAGTCTTTCTCTGTGTATTAAACCTCAGCCTCAGAGAGGGATGGTGGTCTCACAGTGtccagcagtggttcccaaaccaaGGGTCGCGACCCCCGTGTGGGGACGGACGCCTGATGTGAAAACGAGGTTGCGGAAGAATTTCcccaaaaaatcctgaaaataacattttaaaaaataaaacacatttttaaaaata

Function

NR:

description
stimulated by retinoic acid protein 8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956706.1 False 2346 mRNA 0.47 9 6890523 6917536
XM_036956707.1 True 2343 mRNA 0.47 9 6890523 6917536

Neighbor

gene id symbol gene type direction distance location
LOC118942797 NA coding downstream 372177 6517888 ~ 6518853 (-)
LOC110499738 lmo3 coding downstream 701713 6067135 ~ 6188810 (-)
LOC118942843 NA coding downstream 938912 5950034 ~ 5963423 (-)
LOC118942841 NA coding downstream 1068233 5687945 ~ 5822290 (-)
LOC118942840 NA coding downstream 1204307 5652498 ~ 5686229 (-)
LOC118942846 LOC105029310 coding upstream 131360 7048896 ~ 7050907 (-)
LOC118942847 LOC106593057 coding upstream 386069 7303605 ~ 7307397 (-)
LOC118942848 LOC106594098 coding upstream 463043 7379889 ~ 7384439 (-)
LOC118936572 LOC108250668 coding upstream 672992 7585971 ~ 7768303 (-)
LOC110516645 LOC106597241 coding upstream 919614 7837150 ~ 7899175 (-)
G1704303 NA non-coding downstream 10252 6878435 ~ 6880271 (-)
G1704301 NA non-coding downstream 12327 6877914 ~ 6878196 (-)
G1704299 NA non-coding downstream 16114 6873884 ~ 6874409 (-)
G1704293 NA non-coding downstream 31508 6858254 ~ 6859015 (-)
G1704277 NA non-coding downstream 54711 6834820 ~ 6835812 (-)
G1704302 NA non-coding upstream 6021 6923557 ~ 6924789 (-)
G1704325 NA non-coding upstream 17165 6934701 ~ 6935279 (-)
G1704328 NA non-coding upstream 21252 6938788 ~ 6939206 (-)
G1704330 NA non-coding upstream 30121 6947657 ~ 6947930 (-)
G1704337 NA non-coding upstream 63935 6981471 ~ 6981761 (-)
G1704098 NA other downstream 184678 6700898 ~ 6705845 (-)
G1703896 NA other downstream 547341 6342741 ~ 6343182 (-)
G1703878 NA other downstream 582303 6305553 ~ 6308220 (-)
G1703669 NA other downstream 894097 5984365 ~ 5996426 (-)
G1704410 NA other upstream 232029 7149565 ~ 7149979 (-)
G1704412 NA other upstream 239154 7156690 ~ 7157057 (-)
G1704702 NA other upstream 380389 7297925 ~ 7299086 (-)
G1704700 NA other upstream 381664 7299200 ~ 7301845 (-)
G1704726 NA other upstream 448011 7365547 ~ 7366140 (-)

Expression


Co-expression Network