LOC118942846 (LOC105029310)


Basic Information

Item Value
gene id LOC118942846
gene name LOC105029310
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7048896 ~ 7050907 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956708.1
agggagcacGCGCGCTCATGGCTAAGCCTCGTCCCTCGTCCGttccaaacacacatacagtattgtTTTATCGGCGGAGGGCGCGTTGGATTTGATCCAGCTTTAACTGCTGCTGCTTGTCAGTTCAGCTGTCGGGGTGAAACCGTTGGAGGGGTTATTGTTGTTGGTTCAACACTACAAGTATTTTCCGTTTTTATATTTATAAAGCCTATTTAATGGATACGGTATGGAGATAGCGCTGGTGAGTTTTGAGAACGGCGGAGCGAAAGGAAGCGGTGGCAATGCCGGAGATGTAGCCTGCCGTAACGCGCTGGATCACCCTCAACCTCCGCCGTTTGTCCAAAGTGGACTCAGCGAGCTGGGCTACAGCGGTCACAAAGAGATTAATACAATCGGGAGTCCCAAACCGAGGACGTGGAAAATCAACGATATGAATAACACTTTGAGTTGCAACGAGAACGTGATGGATGCGCTCTGGCGCGCAGACCACAGTCCCCATCTGTTGGACGATGACATGTTGGATATTGAgcgcagagacatggacaacaacGAGAGGGTGCTGATCAACATCGCTGGGTTAAAGTACGAGACACAGCTAGGGACACTCAACCAGTTCCCCGAAACGTTACTGGGGGACCCCTATAAGAGGATCAAATACTTCGACCCGCTCCGGAACGAGTACTTTTTCGACCGTAACCGGCCAAGTTTCGACGGGATCTTATATTTCTATCAGTCGGGAGGTAAGATCAGACGACCTGTCAATGTGTCTATCGACGTGTTCGCCGATGAGATTCGGTTTTACCGACTAGGGGAAGAGGCCATGGAACGGTTTAGAGAAGACGAGGGGTTTattaaagaagaagagaaaccgCTACCGCAGAATGAGTTTCAGAAACAAGTCTGGCTCATATTCGAATACCCGGAGAGTTCCAGCCCCGCGCGAGGCATCGCTATAGTCTCAGTGCTGGTCATCACCATATCCATTATCACATTTTGCATGGAGACACTACCGGAGTTCAGGGACGAGAGGGAGCTACCGGTCACCAGTCGGCCTGGTAACAACACCGTTCCGCGTCCCTCTCTCACATTCACAGACCCTTTCTTCATAGTGGAAACCACTTGCGTGATATGGTTCACTTTTGAATTCATAGTGCGTTTCTTCGCCTGCCCCAGTAAGTCGGAGTTCTCCAAGACCGTCATGAACATCATAGACATCATGTCTATCCTGCCTTACTTCATCACGGTGGGCACAGAGCTGGCGGAGCAGCAGGTGGAGGAACCGCAGGAGCACGGCAACGGACAGACCATGTCTCTGGCCATCCTCAGGGTCATCCGGCTGGTCAGGGTGTTCAGGATCTTCAAGCTGTCCAGACACTCCAAGGGGCTTCAGATATTAGGACAAACCCTCAAAGCCAGTATGAGAGAGTTGGGGCTGCTCATTTTCTTCCTCTTCATCGGAGTAATCCTCTTCTCCAGCGCTGTGTTCTTCGCCGAAGCGGACGAGCCCGAATCGCATTTCTCCAGCATCCCCGACGCCTTCTGGTGGGCCGTGGTCACCATGACAACGGTGGGCTATGGGGACATGAGGCCGGTGACAGTGGGGGGGAAGATAGTGGGCTCTCTCTGCGCCATCGCCGGGGTGCTGACCATCGCGCTGCCGGTGCCTGTCATCGTGTCCAACTTTAACTATTTCTACCACAGGGAGACGGACCAGGACCAGTCTTCTCTGAAAGACGACCCGCCCAACAGCAGTCAGGACAGTCCTCAGTTAAAGAGGAAGGACAGTAAGGGATCTGCCAAGTCGGGAGACGAGGAGGACGGAACAGGAGCGGAGAAGGAGAATATCAAGGCTAACAGCAGCATGAACATTAAACGATCCCTTTACGCGTTCTGTCTGAACAAGACGGAGTCGGACCTGTAGTCcccacagacagactgacagacagtagtccccacagacagactgacagacagtagtccccacagacagacagacagacagacagacagta

Function

NR:

description
potassium voltage-gated channel subfamily A member 1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04878 KCNA5, KV1.5; potassium voltage-gated channel Shaker-related subfamily A member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956708.1 True 2012 mRNA 0.52 1 7048896 7050907

Neighbor

gene id symbol gene type direction distance location
LOC118942845 LOC106590959 coding downstream 131360 6890523 ~ 6917536 (-)
LOC118942797 NA coding downstream 530550 6517888 ~ 6518853 (-)
LOC110499738 lmo3 coding downstream 860086 6067135 ~ 6188810 (-)
LOC118942843 NA coding downstream 1097285 5950034 ~ 5963423 (-)
LOC118942841 NA coding downstream 1226606 5687945 ~ 5822290 (-)
LOC118942847 LOC106593057 coding upstream 252698 7303605 ~ 7307397 (-)
LOC118942848 LOC106594098 coding upstream 329672 7379889 ~ 7384439 (-)
LOC118936572 LOC108250668 coding upstream 539621 7585971 ~ 7768303 (-)
LOC110516645 LOC106597241 coding upstream 786243 7837150 ~ 7899175 (-)
LOC118942852 NA coding upstream 838004 7888911 ~ 7890273 (-)
G1704305 NA non-coding downstream 4123 7043785 ~ 7044773 (-)
G1704337 NA non-coding downstream 67135 6981471 ~ 6981761 (-)
G1704330 NA non-coding downstream 100966 6947657 ~ 6947930 (-)
G1704328 NA non-coding downstream 109690 6938788 ~ 6939206 (-)
G1704325 NA non-coding downstream 113617 6934701 ~ 6935279 (-)
G1704373 NA non-coding upstream 32251 7083158 ~ 7083479 (-)
G1704379 NA non-coding upstream 37858 7088765 ~ 7091475 (-)
G1704384 NA non-coding upstream 47274 7098181 ~ 7098411 (-)
G1704385 NA non-coding upstream 48226 7099133 ~ 7099335 (-)
G1704387 NA non-coding upstream 49149 7100056 ~ 7100305 (-)
G1704098 NA other downstream 343051 6700898 ~ 6705845 (-)
G1703896 NA other downstream 705714 6342741 ~ 6343182 (-)
G1703878 NA other downstream 740676 6305553 ~ 6308220 (-)
G1703669 NA other downstream 1052470 5984365 ~ 5996426 (-)
G1704410 NA other upstream 98658 7149565 ~ 7149979 (-)
G1704412 NA other upstream 105783 7156690 ~ 7157057 (-)
G1704702 NA other upstream 247018 7297925 ~ 7299086 (-)
G1704700 NA other upstream 248293 7299200 ~ 7301845 (-)
G1704726 NA other upstream 314640 7365547 ~ 7366140 (-)

Expression


Co-expression Network