LOC118942847 (LOC106593057)


Basic Information

Item Value
gene id LOC118942847
gene name LOC106593057
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7303605 ~ 7307397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956709.1
ATCCTGCAACATGCGTTCACATGATTTAAGTATTATATTGTCTGTGGCTCAGTGATACCTTAAACCCCCGGTGTTTGACAGGTGCTACATGTTTATCTAGGCGGGGAGAATGGGTGCGTTACAGCGGTGCGTCTTGGGACGGCCGCGTCATGTTGAGTTCTAGCTCTTCTACTGCACCAAACCAGGAGAGGAGAGCTTTCTAACGTTGCGTTTCTGCTGATGCGGCAAACTGCagtgcagagcagagcagagcggagCCGGGAAGGGAAATGGTTGTGtgcttctgctctctctctctcacactgcccCACTAACGTGTTCAGCTCAAACCTTCTCACTCATACCATGTTCATTTCACGACCACGCCGCTGGAGAGCGCAGCCACGCGTGACGGTCAAAAGACCGAGTGGGAACTACTAGTCGGTGTTGCCGTCCGTTGGAGAGGAGCTCAAGTTAACGGCTTTTTAACATTTTTCTTtcgtattatattatattatattctctCTATTCCTCGTTCGTACCGTTTCTTCAGCATGGTTTTAAATTGCCTGTCAAGAGATTTACGCTTCTTCCAAGGCGGTTCAGAGCCGTTCGGTACCTCAAGAAGGTCGCCCTAGTCGACATTGGAAGCAAATAACACCGGAATAACGTGGCTGATATTAACGGTCGCTCCAGTCGACGTTAGAAGCCAATAACACGGGAATAGCGTGGATGATATTAACGGTCGCTCCAGTCGACGTTAGAAGCCAATAACACCGGAATAACGTGGCTGATATTAACGGTCGCTCCAGTCGACGTTTAGAAGCCAATAACACCGGAATAACGTGGGTGATATTAACGGTCGTTCCAGTCGACGTTAGAAGCCAATAACACGGGAATAGCGTGAGTGATATTAACGGTCGCTCCAGTCGACGTTTAGAAGCCAATAACACCGGAATAACGTGGGTGATATTAACGGTCGCTCCAGTCGACGTTAGAAGCCAATAACACGGGAATAGCGTGGATGATATTAACGGAGACAGTACAGTCTATGAATATTTCACCGAAGCTCGTACTGTACAGTGCAGTAAAGTGATATCCGCTACCTTTAAAACAAAAAGCCGGGACTGTAAAGTTGTAGCCGTGGCTGGCGGGTGCACCACCACCAAACGGAAATCCAGGTGGAAGacgaaggagaagaagaagaaggaggagcaGCAATGGAGGACTACTCGGAGAGAGGAGCAAGGGAGCCTTAAGAGGAGCAGCGCTTGGCGAGCTAGCCCTCTGCCTGCCTGGCCCGGGTGAATGCAAGGGGGATTTCTAttagacagaagagagagaggggagaaatcTGAGGCGCGCAGTGAGAGCTACTAGATGCCTGCACCCACCGGGCTGAGCCGAGCATCTCCTGCCGCATAGCGCTGCGCTGAGCCCGGGCAACACCGCCAGGATGACTGTGGTGGCCGGAGATAACATGGATGAGACGTCCACCCTGCCGGGGCACCTGCAGGACACCTACCCACCAGACCACGAGGACCACGAGTGCTGCGAGAGGGTTGTCATTAATATCTCAGGGCTGCGCTTCGAGACCCAGCTAAAGACACTCAGTCAGTTCCCCGAGACGTTACTAGGTAACCCCAAAAAGAGAATGCGCTACTTCGACCCGCTTAGAAACGAGTACTTTTTTGACCGGAACCGACCGAGTTTTGACGCTATTCTATATTACTACCAGTCCGGTGGGCGGTTGAGGAGGCCCGTTAACGTTCCTCTGGATATGTTCTCGGAGGAGATCAAGTTCTACGAGCTCGGGGCAGAGGCCATGGAGAAGTTTAGAGAAGACGAAGGTTTTATTAGAGAAGAGGAAAAACCGTTACCAGAGAAAGAGTTTCAACGACAGGTCTGGTTGCTGTTTGAATACCCGGAGAGTTCGGGACCCGCCAGAGGGATTGCTATAGTATCGGTGATGGTTATCTTAATTTCAATAGTCATATTCTGTTTGGAGACGCTGCCAGAACTCAAAGAGGACCCCCGGGGTAGGATGGAAACTGTAGGCAACGTGACATTCTATTATAAACCAAATATTCTCACCGATCCTTTCTTCATAGTGGAGACCCTGTGTATAATCTGGTTCTCCTTTGAGTTGATTGTGCGGTTCTTCGCCTGCCCTAGCAAGGCAGCTTTCTTTAAAAACATGATGAATACTATAGACATAGTAGCTATCATACCCTACTTCATCACGCTGGGCACCGAGCTGGCAGAGGACCAGGAGGGGAAGGAGAAACCAAGTGAGCAGGCCGCGTCTCTGGCCATCCTCAGGGTCATCCGGCTGGTCAGGGTGTTCAGGATCTTCAAGCTGTCCAGACACTCCAAGGGGCTTCAGATATTAGGACAAACCCTCAAAGCCAGTATGAGAGAGTTGGGGCTGCTCATTTTCTTCCTCTTCATCGGAGTCATCCTCTTCTCCAGCGCTGTCTATTTCGCCGAGGCGGAGGAGAAGGAATCTTTCTTCACAAGCATCCCCGACGCCTTCTGGTGGGCCGTGGTCTCCATGACAACAGTGGGCTACGGGGACATGTACCCGGTGACCATCGGCGGAAAGATAGTGGGCTCGCTCTGCGCCATCGCCGGGGTGCTGACCATCGCGCTGCCGGTGCCTGTGATCGTGTCCAACTTTAACTATTTCTATCAccgggagacggagggagaggagcaggCGCAGCTTCTTAACGTCAGCAACCAGGACCTTAACTCAGACAGCAACTCATCGCGCCGCAGCTCCAACTCTATCGCCAGCAAGTCAGAATACATGGAAATAGACGAAGGGATCAACAATAGCATTGATAACTTTAGGGACGCGAATCTCAGAACTGCTAACTGTACGCCTGTCCTCAACCAGAACTGCGTGAATAAGGGCAAGCTGCTGACTGACGTCTAGAAATATATACATTAATTCTATATGGCAGCGATAGACATCATGAGGACACACCGTTCGTTGTAAATATTGTAGAAACGTTTCGGGAAATGCTTGATTTAACTTCGTTAATAATgcgttttttttttgcatttgcgTTAATTACATTTGAATGAATAGAGAGAAAACTGTTTCACCAAAagaggattaaaaaaaaataaaaaaggtttgTTTGACTCTCAAAATGGGAATGATAAAAGTATTATAGTAACATATTATCTTTATGTTCCTAACGTTATCGGAGATATACCGGAAAACATCCTGCCGTTGAAATATGACACGGGGAAAACACAACATGATCGTTGAAGAAGAAACGGTTTTGCATGGATAATGGATCATGGATCATGGATAATGGATCATGGATAATGGATAATGGATCATGGATCATGGATAATGGATCATGG

Function

NR:

description
potassium voltage-gated channel subfamily A member 1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956709.1 True 3360 mRNA 0.49 2 7303605 7307397

Neighbor

gene id symbol gene type direction distance location
LOC118942846 LOC105029310 coding downstream 252698 7048896 ~ 7050907 (-)
LOC118942845 LOC106590959 coding downstream 386069 6890523 ~ 6917536 (-)
LOC118942797 NA coding downstream 785259 6517888 ~ 6518853 (-)
LOC110499738 lmo3 coding downstream 1114795 6067135 ~ 6188810 (-)
LOC118942843 NA coding downstream 1351994 5950034 ~ 5963423 (-)
LOC118942848 LOC106594098 coding upstream 73182 7379889 ~ 7384439 (-)
LOC118936572 LOC108250668 coding upstream 283131 7585971 ~ 7768303 (-)
LOC110516645 LOC106597241 coding upstream 529753 7837150 ~ 7899175 (-)
LOC118942852 NA coding upstream 581514 7888911 ~ 7890273 (-)
LOC110517214 LOC106599091 coding upstream 594315 7901712 ~ 7924740 (-)
G1704698 NA non-coding downstream 9049 7292093 ~ 7294556 (-)
G1704705 NA non-coding downstream 11842 7291175 ~ 7291763 (-)
G1704696 NA non-coding downstream 13869 7289121 ~ 7289736 (-)
G1704693 NA non-coding downstream 14655 7285993 ~ 7288950 (-)
G1704710 NA non-coding downstream 17912 7285173 ~ 7285693 (-)
G1704721 NA non-coding upstream 42148 7349545 ~ 7350511 (-)
G1704694 NA non-coding upstream 44865 7352262 ~ 7353242 (-)
G1704697 NA non-coding upstream 47485 7354882 ~ 7355953 (-)
G1704692 NA non-coding upstream 48718 7356115 ~ 7359498 (-)
G1704722 NA non-coding upstream 53994 7361391 ~ 7364261 (-)
G1704700 NA other downstream 1760 7299200 ~ 7301845 (-)
G1704702 NA other downstream 4519 7297925 ~ 7299086 (-)
G1704412 NA other downstream 146548 7156690 ~ 7157057 (-)
G1704410 NA other downstream 153626 7149565 ~ 7149979 (-)
G1704098 NA other downstream 597760 6700898 ~ 6705845 (-)
G1704726 NA other upstream 58150 7365547 ~ 7366140 (-)
G1704927 NA other upstream 633752 7941149 ~ 7962240 (-)
LOC110515713 LOC106609844 other upstream 681304 7945498 ~ 8003041 (-)

Expression


Co-expression Network