LOC118942848 (LOC106594098)


Basic Information

Item Value
gene id LOC118942848
gene name LOC106594098
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7379889 ~ 7384439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956710.1
gaggagacacagagaggagacagagaagggacaacgagaggagacacagagaggagacagagagagcgagagcgagagagagagaaagagagagagagagagagcggagccCTTCTCATCATTCCACAAGTGACTGCTTGGTCTTGTTGGTCACAAAATAGCGCGGAAGGACTAAAAAAAAGCACGAGTAAAGAGGGGGGATTACGACACGGACACTAGCGGGGTCTTTGGAGACAGAAGCTGTTGCCCTTTGGGGGAGAAACATGACAGTAGTGCCCAGGGAGAACCACGATGAGACTGTGGCACTAACAGCCCTGTCCCAAGATGTGTTCGACCCGGTGGATCAGCGGACAGACCAGGAGTGCTGTGAGCGCGTGGTCATTAACATCTCCGGGCTGCTCTTTGAAACCCAGCTGAAAACGCTCGCTCACTTCCCCACCACTTTACTGGGGGATCCGAGGAAGAGAATGCGCTTCTTCGACCCTCTGAGGAACGAGTACTTCTTCGACAGGAACCGACCCAGCTTCGACGCCATCCTCTACTACTACCAGTCTGGCGGCCGCCTCCGGAGACCCGTCAACGTACCCCTGGACATATTTATGGAGGAGATCAAATTTTACCAATTGGGAGAAGATGTGATCGAGAATTTTAAGGAGGATGAGGGATTTAtaaaagaagaggagagaccgTTGCCAGATAATGAGTTTCAACGACAGGTCTGGCTTCTGTTCGAATACCCGGAGAGTTCGGGACCTGCCAGAGGGATTGctattgtctctgttctggtGATTTTAATTTCTATTGTCATCTTCTGTTTGGAGACGCTGCCTGAGTTTAGGGATGAAAAGGAGAAACATTGGGACACTGAGCTGGCGTTGAATGGAACTAACAGCTCTAAAAAGCCCAATCCATTCACAGATCCTTTCTTCATAGTGGAAACCTTGTGTATCATCTGGTTCTCCTTCGAGTTGTTCGTCAGGTTCCTAGCCTGCCCCTCCAAGCCTGCTTTTTTCAAAAACATGATGAACACCATCGACATTGTGGCCATCATGCCCTATTTCATCACCCTGGGCTTGGAGCTGGCGGAACACCAAGGAAACGGACAGCAGGCCATGTCTCTGGCCATCCTCAGGGTCATCCGGCTGGTCAGGGTGTTCAGGATCTTCAAGCTGTCCAGACACTCCAAGGGACTTCAAATATTGGGACAAACCCTCAAAGCCAGTATGAGAGAGTTGGGGTTGCTCATTTTCTTCCTCTTCATCGGAGTCATCCTCTTCTCCAGTGCTGTCTACTTCGCCGAAACCGACGATCCAGACTCCGGTTTCAGCTCGATCCCCGACGCGTTCTGGTGGGCTGTGGTCTCCATGACTACCGTTGGCTACGGGGACATGTGCCCGGTGACCATCGGCGGAAAGATCGTGGGCTCTCTGTGCGCCATAGCCGGTGTGCTCACCATCGCGTTACCGGTCCCGGTCATCGTGTCCAACTTCAACTACTTCTATCACCGGGAGACCGAGCACGAGGAGCAGTTTCAATACACCCACGTGACGTGTGGCCAGCAGCAGCAACCGTCTTTTGGTGAATTAAAGAACAGTGACAGCCAACCATCATCGCTTTCCAAATCGGACTTAATAGCCACGGAGGACGCTGATTCTATCAAATATACAAATTGCAGCCCACACAAAGCGCACTGTAGCCCACACAAAGCGTACACGGGGAAACTCACTAATGTGTGATAATAGAGCAAACAGAAAATACCCAGCAATGGAAAAAAAAACAGGCATAGCCTTGAAGATATTCAGAGAAACCATGCGTTTCTTTCTGTGAGTAGCATACATCTCCAATTCTGCGCTCTGGCTAGAGTAAGGTTTGGCTCTCTCTTATTTCCGGCGTCTCTTAATGCTGAAGGAATTATGTTTAATAGATTATCATAACGGTGGATGAATTATAACGTGACTCGTGATCTCACCTGAAAACAGTCTTCCGTTATGCGCACAGCTCTTCTTCGCTTGTTGGTTGTAAACATCATTATGAGGCTATATTTAGCctcataaacaaataaacaacaaccatgatcaaccccccccccccccctctctattgtaGCGCTTTACTCATGCTCTCTAATTAATGTCTCATTTATTCAGCCTAATTTCgtgtctgtattttttttcttccgtTTTCTAAAAGTTTACATATTGATCTGCCTGTTTGGTGttgatatataatataataggacCAGTTTGTCTAAAATTACTTGAATGAATCTTATACCTACAGGGCATTGtaatgacttaaaaaaaaaaaaacaaggtcacCCAGTGACTCTACCCACAAACCCCCTCTTTATGTACACCATATCCACGTAATGCGTTTTTCCATTAGACCGTTATTGAGAGCGTTTTACTGGGCAGCGCTGCCTGGCAGCAgaccctctatcctctctgtcaacTGTGATGAGGAATGGGCATAACAGAGGTCTATCCATCCACGCAGAGATGCCCGTTGTCTTTGATAGCGGAACCACAGTAGTCTGAATGGTGTGTGTCCCCGTCTGGGAGCTGCACATCCATTCACACCTTGACAAGCCATTGAGGATACTAGACATTACGCACAGCCCAATTGCCCTCTAAAATGACCACAGGCACTATTCAAATgatttatatttatatgtacggCTCAATAACGAACAGCATCGAATCTGAATCGAATGAATCAAATATCATGCTATTGACATTGTTTACAACATTTCgttgttttttaaaaattattttttattatacaaTCTCACAATCTCACCAAAACTATATAAGTAGGTAGGTTCTATTTGCGAATAGTGCACTATAATATCTTGAGATATTACAGATGCATGAATGAGATATTACAGATGCATGAATGAATGCGTTTAACAACTTGacggggggggtgggggggtgggggggggggatgagaaGCGCACCATGTAGTGCTCAGACAGGCGGTCAGATGGACCCAGAGCGCCGCTCTGTGGAGAGTTCGGGAACTGCAGACGTGGTGTGGAAGCCGGTTAGTTTCTATAGCAACCTTCCAAGACCGTTCTGACAGGGGAAAGACGTTATTGTCTGACGTCAAACAGAACAGAGGAACGGAAGGATTTGACTGACGACCTGGTTGAAGGTGTTTTcattgtaccccccccccccccaatgaatGCTGCTACACAGCGCCCGACTGGAGTTACGTAGAAATGTGATTCAATAATAACCGAGATGATTTTGGCAGCTATGTCCTTGTCCTGGGATGAATGGTTATATATGGTGTAGTGTAGACAGGCAGAGACCTATACTGCAGGCAGAAATGTATTGATATCAGAATCAATAGAAACCCATATTGTCATCGGTAAAAACCCTCCCCTGACTCCGAGGCCACAGCTTACTGGCCACTTAAATCAACAGCGTCATTATATCAAGTCACCTGGCGTTCCAGGCCCGACGACATTTCAGGTCACCTTGTCTTCTGATGTCGTATGACATCATCATATCACTTCGCTACAGTGGATTACTACCTGACAACACTGCCCCCCTCCAACCCCTACATCCCCCTTCTCCATCACCATATCACCAGACTACACTGCCCCCCTCCAACCCCTACATCCCCCTTCTCCATCACCATATCACCAGACTACACTGACCCCCCTCATTCCCCCTTCTCCATCACCATGTCACCTGACACCCTCCAACCCCCTTCCCCATCACCATGTCACCTGATTCTACTGACCCCTCTCCAACCCCCTTCCCCATATCACCTGCCCCCCTCCAACCCCCTTCCCCATCACCATGTCACCTGACTCTACTGACCCCCTCCAACCCCCTTCCCCATCCC
>TU1951803
GTCAGATGGACCCAGAGCGCCGCTCTGTGGAGAGTTCGGGAACTGCAGACGTGGTGTGGAAGCCGGTTAGTTTCTATAGCAACCTTCCAAGACCGTTCTGACAGGGGAAAGACGTTATTGTCTGACGTCAAACAGAACAGAGGAACGGAAGGATTTGACTGACGACCTGGTTGAAGGTGTTTTcattgtaccccccccccccccaatgaatGCTGCTACACAGCGCCCGACTGGAGTTACGTAGAAATGTGATTCAATAATAACCGAGATGATTTTGGCAGCTATGTCCTTGTCCTGGGATGAATGGTTATATATGGTGTAGTGTAGACAGGCAGAGACCTATACTGCAGGCAGAAATGTATTGATATCAGAATCAATAGAAACCCATATTGTCATCGGTAAAAACCCTCCCCTGACTCCGAGGCCACAGCTTACTGGCCACTTAAATCAACAGCGTCATTATATCAAGTCACCTGGCGTTCCAGGCCCGACGACATTTCAGGTCACCTTGTCTTCTGATGTCGTATGACATCATCATATCACTTCGCTACAGTGGATTACTACCTGACAACACTGCCCCCCTCCAACCCCTACATCCCCCTTCTCCATCACCATATCACCAGACTACACTGCCCCCCTCCAACCCCTACATCCCCCTTCTCCATCACCATATCACCAGACTACACTGACCCCCCTCATTCCCCCTTCTCCATCACCATGTCACCTGACACCCTCCAACCCCCTTCCCCATCACCATGTCACCTGATTCTACTGACCCCTCTCCAACCCCCTTCCCCATATCACCTGCCCCCCTCCAACCCCCTTCCCCATCACCATGTCACCTGACCCCCTCCAACCCCCATCACCATGTCACCTGACTCCACTGAACCCCCTCCAACCCCCATCCCCATATCACCTGCCCCCCTCCAACCCCCTTCCCCATCACCATGTCACCTGACCCCCTCCAACCCCATCCCCATATCACCTGACCCCCTCCAACCCCCATCCCCATATCACCTGACCCCCTCCAACCCCCATCCCCATATCACCTGACTCCACTGAACCCCCTCCCCATATCACCTGACCCCCTCCAACCCCTTTCTACCAGTCATGCTGTGGTGCATCTCAGCTAAAAGAGGTGGAATCATAGAACCTTTGGAATAGATTCTGACAGACGTCACTGCGTCACGAGCGTACGGATGACTGACTCAGCTCCCCCCCCGTTGGTTGGATTTACCAGGGGAGGGGGCGGGGACCTGCTGCAGATGACAGATGCAGAAGCCAATCAGGTTGGAATCAATAGCAAAAAAAAACGACATAGACCAACAGACCCTTGGATGATGCAACAGGGCAGCCAACTGCTCAGACGCCCGGACTACAACGTCTCCTGGAGTTATGACGT
>TU1951806
cgtTTTCTAAAAGTTTACATATTGATCTGCCTGTTTGGTGttgatatataatataataggacCAGTTTGTCTAAAATTACTTGAATGAATCTTATACCTACAGGGCATTGtaatgacttaaaaaaaaaaaaacaaggtcacCCAGTGACTCTACCCACAAACCCCCTCTTTATGTACACCATATCCACGTAATGCGTTTTTCCATTAGACCGTTATTGAGAGCGTTTTACTGGGCAGCGCTGCCTGGCAGCAgaccctctatcctctctgtcaacTGTGATGAGGAATGGGCATAACAGAGGTCTATCCATCCACGCAGAGATGCCCGTTGTCTTTGATAGCGGAACCACAGTAGTCTGAATGGTGTGTGTCCCCGTCTGGGAGCTGCACATCCATTCACACCTTGACAAGCCATTGAGGATACTAGACATTACGCACAGCCCAATTGCCCTCTAAAATGACCACAGGCACTATTCAAATgatttatatttatatgtacggC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956710.1 False 3861 mRNA 0.48 1 7380579 7384439
TU1951803 False 1402 TUCP 0.53 3 7379889 7381459
TU1951806 True 502 lncRNA 0.43 1 7381761 7382262

Neighbor

gene id symbol gene type direction distance location
LOC118942847 LOC106593057 coding downstream 73182 7303605 ~ 7307397 (-)
LOC118942846 LOC105029310 coding downstream 329672 7048896 ~ 7050907 (-)
LOC118942845 LOC106590959 coding downstream 463043 6890523 ~ 6917536 (-)
LOC118942797 NA coding downstream 862233 6517888 ~ 6518853 (-)
LOC110499738 lmo3 coding downstream 1191769 6067135 ~ 6188810 (-)
LOC118936572 LOC108250668 coding upstream 206089 7585971 ~ 7768303 (-)
LOC110516645 LOC106597241 coding upstream 452711 7837150 ~ 7899175 (-)
LOC118942852 NA coding upstream 504472 7888911 ~ 7890273 (-)
LOC110517214 LOC106599091 coding upstream 517273 7901712 ~ 7924740 (-)
LOC110515713 LOC106609844 coding upstream 561059 7945498 ~ 8003041 (-)
G1704729 NA non-coding downstream 3356 7376774 ~ 7377223 (-)
G1704722 NA non-coding downstream 16318 7361391 ~ 7364261 (-)
G1704692 NA non-coding downstream 21081 7356115 ~ 7359498 (-)
G1704697 NA non-coding downstream 24626 7354882 ~ 7355953 (-)
G1704694 NA non-coding downstream 27337 7352262 ~ 7353242 (-)
G1704733 NA non-coding upstream 7798 7392237 ~ 7398744 (-)
G1704734 NA non-coding upstream 12738 7397177 ~ 7397506 (-)
G1704739 NA non-coding upstream 22659 7407098 ~ 7407954 (-)
G1704747 NA non-coding upstream 47311 7431750 ~ 7432166 (-)
G1704756 NA non-coding upstream 80644 7465083 ~ 7465717 (-)
G1704726 NA other downstream 14439 7365547 ~ 7366140 (-)
G1704700 NA other downstream 78734 7299200 ~ 7301845 (-)
G1704702 NA other downstream 81493 7297925 ~ 7299086 (-)
G1704412 NA other downstream 223522 7156690 ~ 7157057 (-)
G1704410 NA other downstream 230600 7149565 ~ 7149979 (-)
G1704927 NA other upstream 556710 7941149 ~ 7962240 (-)
pthlha NA other upstream 641850 8024974 ~ 8047016 (-)
G1705386 NA other upstream 1147296 8531735 ~ 8532803 (-)
LOC118942848 LOC106594098 other downstream 302 7379889 ~ 7384439 (-)

Expression


Co-expression Network