LOC118942991


Basic Information

Item Value
gene id LOC118942991
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7561344 ~ 7574758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958454.1
ATGCCAGCCCCGGTACCACCTGATACCAGCCCCGATGCCAGCCCCGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTTCAGCAGGTGAGCTACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTTCAGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATTGACAGATGTAGCAAT
>TU1951590
CTTTCAGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTTCAGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTTCAGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAG

Function

NR:

description
PREDICTED: probable GH family 25 lysozyme 3, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958454.1 False 1237 mRNA 0.43 3 7561344 7574758
TU1951590 True 301 lncRNA 0.42 2 7573086 7574092

Neighbor

gene id symbol gene type direction distance location
LOC118942844 large1 coding upstream 681614 6712920 ~ 6879730 (+)
LOC110500907 braf coding upstream 1257023 6259813 ~ 6304321 (+)
mrps33 mrps33 coding upstream 1309011 6228081 ~ 6252333 (+)
LOC110527635 LOC106590880 coding upstream 1567554 5986775 ~ 5993790 (+)
LOC118942842 LOC106575061 coding upstream 1574703 5979351 ~ 5986641 (+)
LOC110510398 LOC106591976 coding downstream 225908 7800666 ~ 7829915 (+)
LOC118942850 NA coding downstream 228522 7803280 ~ 7805680 (+)
LOC118936573 LOC105026518 coding downstream 298857 7873615 ~ 7878590 (+)
LOC118942851 NA coding downstream 307491 7882249 ~ 7883321 (+)
yt6j yt6j coding downstream 350258 7925016 ~ 7943584 (+)
LOC118942849 arhgap8 non-coding upstream 142 7527527 ~ 7561975 (+)
G1704535 NA non-coding upstream 2574 7558306 ~ 7558770 (+)
G1704502 NA non-coding upstream 90154 7466819 ~ 7471190 (+)
G1704500 NA non-coding upstream 97463 7462300 ~ 7463881 (+)
G1704486 NA non-coding upstream 155455 7405143 ~ 7405889 (+)
G1704539 NA non-coding downstream 21180 7595938 ~ 7600472 (+)
G1704542 NA non-coding downstream 26182 7600940 ~ 7601789 (+)
G1704543 NA non-coding downstream 27525 7602283 ~ 7602753 (+)
G1704549 NA non-coding downstream 87568 7662326 ~ 7704714 (+)
G1704598 NA non-coding downstream 169655 7744413 ~ 7744889 (+)
G1704409 NA other upstream 411351 7149400 ~ 7149993 (+)
G1704232 NA other upstream 553604 7007169 ~ 7007740 (+)
G1703953 NA other upstream 1154571 6406032 ~ 6406773 (+)
G1704562 NA other downstream 82671 7657429 ~ 7657869 (+)
G1704651 NA other downstream 274802 7849560 ~ 7850120 (+)
LOC118942994 LOC106591951 other downstream 964170 8538928 ~ 8564807 (+)
G1705229 NA other downstream 1275640 8850398 ~ 8851107 (+)
eps8a LOC106594571 other downstream 1333758 8908286 ~ 9091490 (+)

Expression


Co-expression Network