yt6j (yt6j)


Basic Information

Item Value
gene id yt6j
gene name yt6j
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7925016 ~ 7943584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956483.1
AGTTGCCGTAGTTGTAGTTTGTTGGTTCAGAACAGAATCAGACACTGctgaaatataagtgaaataaacagcTAGCTACATAATCATATCATGAGTCGATCGTACAATGACGAGTTACAATATTTGGACAAGATTGACAAGAACTGCTGGCGAATCAAGAAAGGTTTCGTCCCAAATATGCAGGTGGAAGGGGTGTTTTACGTCAACGAGTCCCTGGAGAAGCTGATGTTTGAGGAGCTGCGTAACGCGTGTAAAGGAGGAgGTTTTGGCGGGTTTCTCCCTGCCATGAAACAGATTGGAAACGTTGCAGCTCTGCCGGGTATAGTCCATagGTCCATCGGCCTGCCAGACTGCCACTCGGGGTATGGGTTCGCCATCGGAAACATGGCTGCCTTCGACATGAGCGACCCCAACGCAGTCGTATCCCCAGgTGGTGTGGGGTTTGATATTAACTGTGGAGTGCGTCTACTAAGGACCAACCTAGACGAGGGAGACGTCCAGCCTGTCAAGGAGCAGCTGGCTCAGGCCCTGTTTGACCACATCCCTGTAGGAGTCGGCTCCAAGGGAGTCATCCCTATGACCGCCAAGGATCTAGAGGAGGCTCTAGAGATGGGAGTGGACTGGTCCCTGAGAGAAGGCTATGCCTGGGCAGAGGATAAGGAGCACTGTGAGGAGTATGGCAGGATGCTGCAGGCCGACCCCAACAAGGTCTCCTCCAAGGCCAAGAAGAGAGGCCTGCCTCAGCTGGGTACTCTGGGGGCAGGGAACCACTACGCTGAGATCCAGCTGGGTACTCTGGGGGCAGGGAACCACTACGCTGAGATCCAGGTGGTGGATGAGATCTATAATGACTATGCTGCTAAGAAGATGGGCATCGACCACAAGGGCCAGGTGTGTGTGATGATCCACAGTGGCAGCAGGGGGCTGGGCCACCAGGTGGCGACAGATGCCCTGGTTGCCATGGAGAAGGCGATGAAGCGAGACAAGATCCAGGTGAACGATCGTCAGCTGGCGTGCGCCCGTATCTTTTCAGAGGAGGGACAAGACTACCTGAAAGGAATGGCCGCCGCCGGCAACTATGCCTGGGTCAACCGTTCCTCTATGACCTTCCTCACACGACAGgcGTTTGCCAAGGTGTTCACCACCACTCCTGATGACCTGGACATGCATGTGATCTATGACGTGTCTCATAACATCGCCAAGGTGGAGGAACACATGGTAGATGGGAAACAGAAGACTCTACTGCTGCATCGCAAGGGATCCACCCGGGCCTTCCCTCCACACCaccccctcatccctgtagactaccagCTGACAGGCCAGCCGGTGTTGATCGGGGGCACGATGGGCACCTGCAGTTACGTCCTGACGGGCACGGAACAGGGCATGACAGAGACCTTCGGCACCACCTGCCACGGCGCGGGTCGGGCTCTGTCTCGGGCCAAATCCCGCAGGAATATCGACTTCCAGGACGTGTTGGATAAGCTGGCAGACAAGGGTATCGCCATCAGGGTGGCTTCGCCCAAACTAGTCATGGAAGAGGCTCCGGAGTCGTACAAAAACGTGTGTGATGTCGTCAACACGTGTCACGATGCTGGAATCAGCAAGAAAGCCATCAAACTACGACCCATCGCTGTGATCAAGGGATAAGGCTGCACCGCTCTGCTAGTGACGGCATTGGCCATGGCACTCCCTCCAGGAGCCAATCACCAGGCAGAGAGCTGGCGGAGGAGCCAATGGGGAAGTGTCTGACTGCGAGTGAGCATGTCCGTCTTCATAGACTGACTTGACAAGGGATCGGTTTCCTCCACTTCCTGTCTATGACCAGTATGATTATTTTGGCATGGGGGGGTGATTTGTCCGTTGAGTGATCAATTTAATTGGACCGGATGGGCTCTTTAATATTGTAAAGTTTGAGAGGGTGAAGTGTCTTGGGTTTACTTTTCATTCATGGCAAAGTCACTGTGGAAAATAACCTTGAGATTCAGGTTAACCAGAGATAATAAAATACAAGATGACAGATTGATCTACTTGCA
>XM_036956485.1
AGTTGCCGTAGTTGTAGTTTGTTGGTTCAGAACAGAATCAGACACTGctgaaatataagtgaaataaacagcTAGCTACATAATCATATCATGAGTCGATCGTACAATGACGAGTTACAATATTTGGACAAGATTGACAAGAACTGCTGGCGAATCAAGAAAGGTTTCGTCCCAAATATGCAGGTGGAAGGGGTGTTTTACGTCAACGAGTCCCTGGAGAAGCTGATGTTTGAGGAGCTGCGTAACGCGTGTAAAGGAGGAgGTTTTGGCGGGTTTCTCCCTGCCATGAAACAGATTGGAAACGTTGCAGCTCTGCCGGGTATAGTCCATagGTCCATCGGCCTGCCAGACTGCCACTCGGGGTATGGGTTCGCCATCGGAAACATGGCTGCCTTCGACATGAGCGACCCCAACGCAGTCGTATCCCCAGgTGGTGTGGGGTTTGATATTAACTGTGGAGTGCGTCTACTAAGGACCAACCTAGACGAGGGAGACGTCCAGCCTGTCAAGGAGCAGCTGGCTCAGGCCCTGTTTGACCACATCCCTGTAGGAGTCGGCTCCAAGGGAGTCATCCCTATGACCGCCAAGGATCTAGAGGAGGCTCTAGAGATGGGAGTGGACTGGTCCCTGAGAGAAGGCTATGCCTGGGCAGAGGATAAGGAGCACTGTGAGGAGTATGGCAGGATGCTGCAGGCCGACCCCAACAAGGTCTCCTCCAAGGCCAAGAAGAGAGGCCTGCCTCAGCTGGGTACTCTGGGGGCAGGGAACCACTACGCTGAGATCCAGGTGGTGGATGAGATCTATAATGACTATGCTGCTAAGAAGATGGGCATCGACCACAAGGGCCAGGTGTGTGTGATGATCCACAGTGGCAGCAGGGGGCTGGGCCACCAGGTGGCGACAGATGCCCTGGTTGCCATGGAGAAGGCGATGAAGCGAGACAAGATCCAGGTGAACGATCGTCAGCTGGCGTGCGCCCGTATCTTTTCAGAGGAGGGACAAGACTACCTGAAAGGAATGGCCGCCGCCGGCAACTATGCCTGGGTCAACCGTTCCTCTATGACCTTCCTCACACGACAGgcGTTTGCCAAGGTGTTCACCACCACTCCTGATGACCTGGACATGCATGTGATCTATGACGTGTCTCATAACATCGCCAAGGTGGAGGAACACATGGTAGATGGGAAACAGAAGACTCTACTGCTGCATCGCAAGGGATCCACCCGGGCCTTCCCTCCACACCaccccctcatccctgtagactaccagCTGACAGGCCAGCCGGTGTTGATCGGGGGCACGATGGGCACCTGCAGTTACGTCCTGACGGGCACGGAACAGGGCATGACAGAGACCTTCGGCACCACCTGCCACGGCGCGGGTCGGGCTCTGTCTCGGGCCAAATCCCGCAGGAATATCGACTTCCAGGACGTGTTGGATAAGCTGGCAGACAAGGGTATCGCCATCAGGGTGGCTTCGCCCAAACTAGTCATGGAAGAGGCTCCGGAGTCGTACAAAAACGTGTGTGATGTCGTCAACACGTGTCACGATGCTGGAATCAGCAAGAAAGCCATCAAACTACGACCCATCGCTGTGATCAAGGGATAAGGCTGCACCGCTCTGCTAGTGACGGCATTGGCCATGGCACTCCCTCCAGGAGCCAATCACCAGGCAGAGAGCTGGCGGAGGAGCCAATGGGGAAGTGTCTGACTGCGAGTGAGCATGTCCGTCTTCATAGACTGACTTGACAAGGGATCGGTTTCCTCCACTTCCTGTCTATGACCAGTATGATTATTTTGGCATGGGGGGGTGATTTGTCCGTTGAGTGATCAATTTAATTGGACCGGATGGGCTCTTTAATATTGTAAAGTTTGAGAGGGTGAAGTGTCTTGGGTTTACTTTTCATTCATGGCAAAGTCACTGTGGAAAATAACCTTGAGATTCAGGTTAACCAGAGATAATAAAATACAAGATGACAGATTGATCTACTTGCA
>NM_001160647.1
AGAATCAGACACTGctgaaatataagtgaaataaacagcTAGCTACATAATCATATCATGAGTCGATCGTACAATGACGAGTTACAATATTTGGACAAGATTGACAAGAACTGCTGGCGAATCAAGAAAGGTTTCGTCCCAAATATGCAGGTGGAAGGGGTGTTTTACGTCAACGAGTCCCTGGAGAAGCTGATGTTTGAGGAGCTGCGTAACGCGTGTAAAGGAGGAgGTTTTGGCGGGTTTCTCCCTGCCATGAAACAGATTGGAAACGTTGCAGCTCTGCCGGGTATAGTCCATagGTCCATCGGCCTGCCAGACTGCCACTCGGGGTATGGGTTCGCCATCGGAAACATGGCTGCCTTCGACATGAGCGACCCCAACGCAGTCGTATCCCCAGgTGGTGTGGGGTTTGATATTAACTGTGGAGTGCGTCTACTAAGGACCAACCTAGACGAGGGTGGCTTCGCCCAAACTAGTCATGGAAGAGGCTCCGGAGTCGTACAAAAACGTGTGTGATGTCGTCAACACGTGTCACGATGCTGGAATCAGCAAGAAAGCCATCAAACTACGACCCATCGCTGTGATCAAGGGATAAGGCTGCACCGCTCTGCTAGTGACGGCATTGGCCATGGCACTCCCTCCAGGAGCCAATCACCAGGCAGAGAGCTGGCGGAGGAGCCAATGGGGAAGTGTCTGACTGCGAGTGAGCATGTCCGTCTTCATAGACTGACTTGACAAGGGATCGGTTTCCTCCACTTCCTGTCTATGACCAGTATGATTATTTTGGCATGGGGGGGTGATTTGTCCGTTGAGTGATCAATTTAATTGGACCGGATGGGCTCTTTAATATTGTAAAGTTTGAGAGGGTGAAGTGTCTTGGGTTTACTTTTCATTCATGGCAAAGTCACTGTGGAAAATAACCTTGAGATTCAGGTTAACCAGAGATAATAAAATACAAGATGACAGATTGATCTACTTGC
>TU1951705
ATCGACTTCCAGGACGTGTTGGATAAGCTGGCAGACAAGGGTATCGCCATCAGGGTGGCTTCGCCCAAACTAGTCATGGAAGAGGCTCCGGAGTCGTACAAAAACGTGTGTGATGTCGTCAACACGTGTCACGATGCTGGAATCAGCAAGAAAGCCATCAAACTACGACCCATCGCTGTGATCAAGGGATAAGGCTGCACCGCTCTGCTAGTGACGGCATTGGCCATGGCACTCCCTCCAGGAGCCAATCACCAGGCAGAGAGCTGGCGGAGGAGCCAATGGGGAAGTGTCTGACTGCGAGTGAGCATGTCCGTCTTCATAGACTGACTTGACAAGGGATCGGTTTCCTCCACTTCCTGTCTATGACCAGTATGATTATTTTGGCATGGGGGGGTGATTTGTCCGTTGAGTGATCAATTTAATTGGACCGGATGGGCTCTTTAATATTGTAAAGTTTGAGAGGGTGAAGTGTCTTGGGTTTACTTTTCATTCATGGCAAAGTCACTGTGGAAAATAACCTTGAGATTCAGGTTAACCAGAGATAATAAAATACAAGATGACAGATTGA

Function

NR:

description
PREDICTED: tRNA-splicing ligase RtcB homolog

GO:

id name namespace
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0072669 tRNA-splicing ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003972 RNA ligase (ATP) activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956483.1 False 2036 mRNA 0.53 13 7925016 7943584
XM_036956485.1 False 1994 mRNA 0.53 12 7925016 7943584
NM_001160647.1 False 980 mRNA 0.48 7 7925049 7943583
TU1951705 True 568 lncRNA 0.48 2 7941952 7943574

Neighbor

gene id symbol gene type direction distance location
LOC118942851 NA coding upstream 41695 7882249 ~ 7883321 (+)
LOC118936573 LOC105026518 coding upstream 46426 7873615 ~ 7878590 (+)
LOC110510398 LOC106591976 coding upstream 95101 7800666 ~ 7829915 (+)
LOC118942850 NA coding upstream 119336 7803280 ~ 7805680 (+)
LOC118942991 NA coding upstream 350258 7561344 ~ 7574758 (+)
LOC118942853 LOC106593275 coding downstream 59831 8003415 ~ 8009468 (+)
LOC118943012 NA coding downstream 60707 8004291 ~ 8004425 (+)
LOC118942992 NA coding downstream 184901 8128485 ~ 8132838 (+)
LOC118942854 NA coding downstream 581372 8524956 ~ 8532810 (+)
LOC118942994 LOC106591951 coding downstream 610857 8538928 ~ 8564807 (+)
G1704639 NA non-coding upstream 25465 7898274 ~ 7899551 (+)
G1704654 NA non-coding upstream 48516 7875229 ~ 7876500 (+)
G1704652 NA non-coding upstream 72719 7850911 ~ 7852297 (+)
G1704650 NA non-coding upstream 78322 7846485 ~ 7846694 (+)
G1704636 NA non-coding upstream 85673 7837179 ~ 7839343 (+)
G1704671 NA non-coding downstream 27735 7971319 ~ 7971778 (+)
G1704675 NA non-coding downstream 32182 7975766 ~ 7976717 (+)
G1704683 NA non-coding downstream 44627 7988211 ~ 7988453 (+)
G1704945 NA non-coding downstream 66564 8010148 ~ 8010428 (+)
G1704946 NA non-coding downstream 68040 8011624 ~ 8012083 (+)
G1704651 NA other upstream 74896 7849560 ~ 7850120 (+)
G1704562 NA other upstream 267147 7657429 ~ 7657869 (+)
LOC118942849 arhgap8 other upstream 379172 7527527 ~ 7561975 (+)
G1704409 NA other upstream 775023 7149400 ~ 7149993 (+)
G1704232 NA other upstream 917276 7007169 ~ 7007740 (+)
G1705229 NA other downstream 906814 8850398 ~ 8851107 (+)
eps8a LOC106594571 other downstream 964932 8908286 ~ 9091490 (+)
G1705267 NA other downstream 1031720 8975304 ~ 8976565 (+)
G1705279 NA other downstream 1068342 9011926 ~ 9013163 (+)
G1704659 NA non-coding upstream 13124 7928449 ~ 7928828 (+)

Expression


Co-expression Network