LOC118942858 (LOC106612417)


Basic Information

Item Value
gene id LOC118942858
gene name LOC106612417
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8864331 ~ 8869236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956774.1
AAAGTAGAGCTTCTTAACTTCTTGCTCCTATGTGGGACGTCAGCGTCCCACATAGGCTAACTTCCGGTGAAATAGCATAGCACAAAGATACTAAATGCACAAATCGTAATGTTAAACTttcttgtaaatacatgtatctaacatcatttaaaagcttaatttCCTCTTAATCCAACcaccatgtcagatttttaaaatgcttttcagcgaaagcaatcTTACGATAATCTGACGACAGCGCGccacacacacaagtattacAAGCATTTTCCATCCAAACATTAGCGTCACAAAAAGCCAGAAATAGCACTAAAATAATcaattacctttgaagatcttcttcttttGGCAATACAAAAGGTCCAATCTTCACAATAAATGGTTGCTTTGTTCGATTAAATCATGTTTCCATgcataaaacaacacattttgtaAAAGGCTTGTGTCCTGAATTCCGTATCCTTCGACGTTCAACCAGACATGGGATGCAATCAGTCACACAGCATTGACGTTatctagtcatggttggtttctGTGAAATCCTTTGTTTGTTAGTAACACAACGACACCTTGTTAGGTGCGTATTGACCGAAAGGAGGTGACTTGAACCCAGCAAACAATGACCTGATTACGCGCCAATGATCTCACCTGTGCATCTTTGAATGACTGTATTTCTGCCCAATCACCACTGATCCTCTTGAAATCTTGCTTGGTAGATAGCCAATGGGCTTAGGTAAATGGAAATAGCAATTGTTTGTATCAGGGAAGACCAGCTCTTGACCGAAACTCGAGCGTAACGCAGCCATTCGCCATTGGAATTTCTACCAGAAGGAGCCATTTTCTTTGCGCAACGCAGTATTTAGTCAATATAATTTTCCGCTCTTTTATTGAAGTAATTATGGCGAGTAAAGCTGTAAAAGCAAAGGCAAAGTCCAAGTATACGGATCTCCAAGAGATTATTTGCGAGATTGAACGAGAAAGTGACACAGAAATCCCAGATGATCTATCAGATTGTGCGTCAAGTGTGGACAGCAACTTTGAGTACATGTTTCTGCGTGGTGAGGATGCCATTCTCGATTGTCCCAGTCCCTCTGATTCTGATTGGGAGCCCCCACTGAAAGGAGCTGGACCATCTAGCCGGACCCCTGCTGTCTCCGGCTCCACACCTACCCCCGCCCTGCAAGGTGTGAAGTCTGTGACAAAGAAGCGGAGGTGGGGAAGGGCTAAACCTGcaatcagagaggaggagggtcgTTGGCACTCTGTGCTGGAGGAGGATGTGTTGCCTACACCTCCAGTATTCAGACCGAAGAGGCCAACAGGACCTCAGCTGGACATGACCTCTAAGTACAGCCCCATTCAACTTTTTCAGCTGTTTTTCACCTCGGCAGTTGTTGATTCCTTGGTGTCGAACACAAACAAGTATGGTGCTAAGAAGCAGGCAGGcaagaaagagggatggaagcCCATTGCCATTTCAGATTTTTTTGGGTTCATGTCCATGGTCATTTACATGGGTATTGTGAAGCTAAAAACCCTGAAAGACTACTGGAAAACTGCTTCCCTCTATCAACTGCCTTTCCCATCCACGGTCATATCATGCAAAAGGTTTCTGACAATCTCAGGGGCGCTTCATAtcagtgacccagaagttgaTGAGGACAACGAGAAGAAGAGAGGCACAGCTAGGTTTGATAGGCTGTGCAAAATAAAACCTCTCTACCCCAGCATTGTTGAGGCTTGCAAAACCTATTTTCAGCCTGCCCAGAACCTTTCcatagatgagaggatggtagctTCAAAAGCCCGAATTGGCCTAAAACAGTACATGCGCAACAAACCAACTAAATGGGGTTACAAACTGTTTGTTTTGGCCGATTCTGCGTGTGCATATACgtgcaatttttttatttatgagGGGAAGAACAGTTTTGCGACCGGTAATGGACTTAGTTATGACTCTGTTATGCAGTTATTAGATTTTCAACTGCTGGGGAAGGGCTACAAACTTTTTGTGGACAACTTTtacacaagccctaccctgtttACAGAGCTGAGGAAGCGGGATGtgtgggcttgtggcaccattcggCCCAATAGAGTGGGCTTTCCAAAAACCAAGGTGAATGACATGCCTAAGCGGGCTGAGCGGGGTACCATGAGATGGATCCGTGAAGATGGCCTGCTCTTTGTGAAGTGGATGGACACCAGAGAGGTGGTCATGTGCTCCAGtatccacaagtccttcagtggaGATCACGTCGTCAGGCGTGTGAAGGACGCTGCTGGGGCATGGACCACCAAGAATGTCCCCATTCCTGGAGCAATCAAGGACTACAACAAAAGCATGGGAGGTGTAGACCTCTCGGATGCGCTTATTGGATACTACAACGTTCTCCACAAGACAATGAAGTGGTACAAGACATTTTTTTATCATTTCgttgacattgctgtggtgaacgccttcatcctccagaaggaaatggcTCAGAGCTGTGGACatccccccatctcacagctagccttcagggagctgctcatccatgagcttgctagctacagcaagTCCACTGTAGCACCTTCTGTCCCCTCTACGTCTGGCCCCTCTGCTCCAACCAGTAgtgttcacctgcccagattcatCTCTGCAGGCATGAATGTGCCTCAGGGCAAAAAGGGCACAATAGGGAGACGTCGTTGTGTCCTCtgtcacaggaaatgccccatcacctgcaccagcTGTTCAGTAACCCtgtgctttacagcagaaagagactgctattggGCATGGCATCAGAAgaacaatattgtgtagaggactgagggtcttcacaaTATTGTACATTGTACATTGAATGTGTGTAAATAGTTTACCCTTGTTATTTGAAAATGtttcaaatgttcattttttgGGTTTTTTTTGTGGGGTGGTATGTTAGAATGGCATTTGAGTGTTTTGTATATAGTAATTTACTTCAATGTATCACTGTGCCAAAtaggccacttgggtacatttgggcaccttgtgtgggacacctgggtgactacatgctcaatgtcatgtagctcactcatTCCTGAAGATATCTTTCTAAAACTTTTTTCAAATACTGTTGCCATCTTGTGTTCTCCATTTCTACCacccccagcatcctatctgtatgtgTGGATGTTCTTGTTCAGTTGAAAGATGATGCAGcaacaataaaaacagaaaacGAATGTtaatttccttgtattttcttctaccagatctatggtgttctattctcctacattcaattcacatttacacaaaattcagagtgtttcctttcaaatgg

Function

NR:

description
piggyBac transposable element-derived protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956774.1 True 3323 mRNA 0.44 2 8864331 8869236

Neighbor

gene id symbol gene type direction distance location
LOC118942855 gpr19 coding upstream 73261 8770887 ~ 8791070 (+)
LOC118936349 tbk1 coding upstream 119866 8684919 ~ 8744666 (+)
LOC110512606 lrp6 coding upstream 194933 8569390 ~ 8669398 (+)
LOC118942994 LOC106591951 coding upstream 302850 8538928 ~ 8564807 (+)
LOC118942854 NA coding upstream 331521 8524956 ~ 8532810 (+)
eps8a LOC106594571 coding downstream 39050 8908286 ~ 9091490 (+)
LOC118942863 NA coding downstream 155138 9024374 ~ 9027016 (+)
LOC118942859 NA coding downstream 213560 9082796 ~ 9084558 (+)
zgc:194209 LOC106591857 coding downstream 347989 9217225 ~ 9241339 (+)
LOC110507941 LOC106592244 coding downstream 467645 9336881 ~ 9354472 (+)
G1705227 NA non-coding upstream 18267 8845515 ~ 8846064 (+)
G1705216 NA non-coding upstream 56385 8803063 ~ 8807946 (+)
G1705217 NA non-coding upstream 67055 8796928 ~ 8797276 (+)
G1705211 NA non-coding upstream 82886 8780217 ~ 8781445 (+)
G1705207 NA non-coding upstream 102492 8760475 ~ 8761839 (+)
G1705214 NA non-coding downstream 3529 8872765 ~ 8873260 (+)
G1705248 NA non-coding downstream 40756 8909992 ~ 8911381 (+)
G1705261 NA non-coding downstream 93688 8962924 ~ 8965174 (+)
G1705263 NA non-coding downstream 94776 8964012 ~ 8972856 (+)
G1705264 NA non-coding downstream 97478 8966714 ~ 8968814 (+)
G1705229 NA other upstream 13224 8850398 ~ 8851107 (+)
G1704651 NA other upstream 1014211 7849560 ~ 7850120 (+)
G1704562 NA other upstream 1206462 7657429 ~ 7657869 (+)
LOC118942849 arhgap8 other upstream 1318487 7527527 ~ 7561975 (+)
G1705267 NA other downstream 106068 8975304 ~ 8976565 (+)
G1705279 NA other downstream 142690 9011926 ~ 9013163 (+)
G1705918 NA other downstream 786062 9655298 ~ 9655718 (+)
G1705920 NA other downstream 790095 9659331 ~ 9660140 (+)

Expression


Co-expression Network