LOC110507941 (LOC106592244)


Basic Information

Item Value
gene id LOC110507941
gene name LOC106592244
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9336881 ~ 9354472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956789.1
gggttggattacaggctcaaaatggccagaaacaaataacttttttctgaaactcgtcagtctattcttgttctgagaaatgaaggctgttccatgcgagaaattgaggGTTTTCTCTGTGTCTTctgtcagagcaggagatgtgtTGTTAGAACTAGCAGGTTGTTGATGTAATTCTAGTCTGTCAgaacaggagatgtgttgttagAACTAGCAGGTTGTTGATGTAATTCTAGTCTGTCAgaacaggagatgtgttgttagAACTAGCAGGTTGTTGATGTGATTCTAGTCTGTCAGAACAGGAGATGTATTGTTAGAACTAGCAAGATGTTGATGTGATTCTAGTCTGTCAgaacaggagatgtgttgttggAACTAGCAGGATGTTGATGTGATTCTAGTCTGACTGATAATGAGAGTGGGCAGGGCTGAGGCTTTTAGGACACACCCACTAGTGTAGAGAGGAGGATATGGTCTGGTTGCTGTTCTGCAGTACCTTATTAtttcctcatctcttctccttacATCACTTCatttcactcctcctcctcctcctcaacagtGACTAATCCAAGCCAGAAGCAGTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTACACTACCAAGAccaagctactactactactacagtcacTGTGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTATACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTATCCTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACACTCTCTGATTCTGAGCTATACTACCAAGAccaagctactactactactgtcactgtGTTACTCTCAACATTCTCTGATTCATGTCCAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTATAGTGATGGCCCTGCACCTCGCAACAGGGCTGGATGCTGCCCCGGGGGTAGTGAACActacagaggaggaggtggaaggcgTGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCCACTGCAGAGtTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCGGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTCAGGAGACACACAGACCAGCCGGTCTGGATGGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACActggagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCATCATTGCCAAGTCAGAAGAAATCACACGAGAGAGagcTGGTTAAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCTACTCAGCCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGACAGAGTCATCCCCATGCTGCGGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGATGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGTCCCAGATCCAAACTCAACCACACCTGAACCTGTCCTCCATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGACATTGTAAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCCCTGGGAGAGAGGACCAGACAAggccccagcccctgcctctaccCCTGGCTAAacctcttcccctgcccctgctaccagtgggggagagaggacatgaaGCCAGACCAGAGGAACCAGAAGGATGAGTCTGGGACATATTACAGgcATCTACTGGAGAAGTACCAGGATGTGATAGACATCTACAAGGCTGTCAACATCTTCAGAGCCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACTGGTgacaaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTACGGTGAAGCTGTAGAAGTGCAGCTGATTGAATACAGGGAGCTGAGTGTGTAAGGCTGTGTGTGCTGGCTTTCACACTGGGCAGGACTGTTCCTCTTGTCAGACATATTCCAATATTCCACTTTTATGTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACATAATGAATGTACACATCTAATAACACATTTAATTATTGTCAACAAAGGAGctacaataaaataaataacatttaggTTATAAAATCATAGAATGAAACTGTGTGAACTGTTCAACTGTATTTCCTTATGGGTATTGCAATGTC
>XM_036956790.1
gggttggattacaggctcaaaatggccagaaacaaataacttttttctgaaactcgtcagtctattcttgttctgagaaatgaaggctgttccatgcgagaaattgaggGTTTTCTCTGTGTCTTctgtcagagcaggagatgtgtTGTTAGAACTAGCAGGTTGTTGATGTAATTCTAGTCTGTCAgaacaggagatgtgttgttagAACTAGCAGGTTGTTGATGTAATTCTAGTCTGTCAgaacaggagatgtgttgttagAACTAGCAGGTTGTTGATGTGATTCTAGTCTGTCAGAACAGGAGATGTATTGTTAGAACTAGCAAGATGTTGATGTGATTCTAGTCTGTCAgaacaggagatgtgttgttggAACTAGCAGGATGTTGATGTGATTCTAGTCTGACTGATAATGAGAGTGGGCAGGGCTGAGGCTTTTAGGACACACCCACTAGTGTAGAGAGGAGGATATGGTCTGGTTGCTGTTCTGCAGTACCTTATTAtttcctcatctcttctccttacATCACTTCatttcactcctcctcctcctcctcaacagtGACTAATCCAAGCCAGAAGCAGTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTATACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTATCCTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACACTCTCTGATTCTGAGCTATACTACCAAGAccaagctactactactactgtcactgtGTTACTCTCAACATTCTCTGATTCATGTCCAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTATAGTGATGGCCCTGCACCTCGCAACAGGGCTGGATGCTGCCCCGGGGGTAGTGAACActacagaggaggaggtggaaggcgTGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCCACTGCAGAGtTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCGGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTCAGGAGACACACAGACCAGCCGGTCTGGATGGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACActggagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCATCATTGCCAAGTCAGAAGAAATCACACGAGAGAGagcTGGTTAAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCTACTCAGCCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGACAGAGTCATCCCCATGCTGCGGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGATGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGTCCCAGATCCAAACTCAACCACACCTGAACCTGTCCTCCATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGACATTGTAAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCCCTGGGAGAGAGGACCAGACAAggccccagcccctgcctctaccCCTGGCTAAacctcttcccctgcccctgctaccagtgggggagagaggacatgaaGCCAGACCAGAGGAACCAGAAGGATGAGTCTGGGACATATTACAGgcATCTACTGGAGAAGTACCAGGATGTGATAGACATCTACAAGGCTGTCAACATCTTCAGAGCCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACTGGTgacaaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTACGGTGAAGCTGTAGAAGTGCAGCTGATTGAATACAGGGAGCTGAGTGTGTAAGGCTGTGTGTGCTGGCTTTCACACTGGGCAGGACTGTTCCTCTTGTCAGACATATTCCAATATTCCACTTTTATGTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACATAATGAATGTACACATCTAATAACACATTTAATTATTGTCAACAAAGGAGctacaataaaataaataacatttaggTTATAAAATCATAGAATGAAACTGTGTGAACTGTTCAACTGTATTTCCTTATGGGTATTGCAATGTC
>XM_036956791.1
ggttggattacaggctcaaaatggccagaaacaaataacttttttctgaaactcgtcagtctattcttgttctgagaaatgaaggctgttccatgcgagaaattgaggGTTTTCTCTGTGTCTTctgtcagagcaggagatgtgtTGTTAGAACTAGCAGGTTGTTGATGTAATTCTAGTCTGTCAgaacaggagatgtgttgttagAACTAGCAGGTTGTTGATGTAATTCTAGTCTGTCAgaacaggagatgtgttgttagAACTAGCAGGTTGTTGATGTGATTCTAGTCTGTCAGAACAGGAGATGTATTGTTAGAACTAGCAAGATGTTGATGTGATTCTAGTCTGTCAgaacaggagatgtgttgttggAACTAGCAGGATGTTGATGTGATTCTAGTCTGACTGATAATGAGAGTGGGCAGGGCTGAGGCTTTTAGGACACACCCACTAGTGTAGAGAGGAGGATATGGTCTGGTTGCTGTTCTGCAGTACCTTATTAtttcctcatctcttctccttacATCACTTCatttcactcctcctcctcctcctcaacagtGACTAATCCAAGCCAGAAGCAGTAGCCAGCTCAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTATAGTGATGGCCCTGCACCTCGCAACAGGGCTGGATGCTGCCCCGGGGGTAGTGAACActacagaggaggaggtggaaggcgTGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCCACTGCAGAGtTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCGGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTCAGGAGACACACAGACCAGCCGGTCTGGATGGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACActggagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCATCATTGCCAAGTCAGAAGAAATCACACGAGAGAGagcTGGTTAAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCTACTCAGCCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGACAGAGTCATCCCCATGCTGCGGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGATGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGTCCCAGATCCAAACTCAACCACACCTGAACCTGTCCTCCATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGACATTGTAAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCCCTGGGAGAGAGGACCAGACAAggccccagcccctgcctctaccCCTGGCTAAacctcttcccctgcccctgctaccagtgggggagagaggacatgaaGCCAGACCAGAGGAACCAGAAGGATGAGTCTGGGACATATTACAGgcATCTACTGGAGAAGTACCAGGATGTGATAGACATCTACAAGGCTGTCAACATCTTCAGAGCCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACTGGTgacaaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTACGGTGAAGCTGTAGAAGTGCAGCTGATTGAATACAGGGAGCTGAGTGTGTAAGGCTGTGTGTGCTGGCTTTCACACTGGGCAGGACTGTTCCTCTTGTCAGACATATTCCAATATTCCACTTTTATGTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACATAATGAATGTACACATCTAATAACACATTTAATTATTGTCAACAAAGGAGctacaataaaataaataacatttaggTTATAAAATCATAGAATGAAACTGTGTGAACTGTTCAACTGTATTTCCTTATGGGTATTGCAATGTC
>XM_036956792.1
ggttggattacaggctcaaaatggccagaaacaaataacttttttctgaaactcgtcagtctattcttgttctgagaaatgaaggctgttccatgcgagaaattgaggGTTTTCTCTGTGTCTTctgtcagagcaggagatgtgtTGTTAGAACTAGCAGGTTGTTGATGTAATTCTAGTCTGTCAgaacaggagatgtgttgttagAACTAGCAGGTTGTTGATGTAATTCTAGTCTGTCAgaacaggagatgtgttgttagAACTAGCAGGTTGTTGATGTGATTCTAGTCTGTCAGAACAGGAGATGTATTGTTAGAACTAGCAAGATGTTGATGTGATTCTAGTCTGTCAgaacaggagatgtgttgttggAACTAGCAGGATGTTGATGTGATTCTAGTCTGACTGATAATGAGAGTGGGCAGGGCTGAGGCTTTTAGGACACACCCACTAGTGTAGAGAGGAGGATATGGTCTGGTTGCTGTTCTGCAGTACCTTATTAtttcctcatctcttctccttacATCACTTCatttcactcctcctcctcctcctcaacagtGACTAATCCAAGCCAGAAGCAGTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTACACTACCAAGAccaagctactactactactacagtcacTGTGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTATACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTATCCTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTATAGTGATGGCCCTGCACCTCGCAACAGGGCTGGATGCTGCCCCGGGGGTAGTGAACActacagaggaggaggtggaaggcgTGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCCACTGCAGAGtTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCGGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTCAGGAGACACACAGACCAGCCGGTCTGGATGGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACActggagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCATCATTGCCAAGTCAGAAGAAATCACACGAGAGAGagcTGGTTAAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCTACTCAGCCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGACAGAGTCATCCCCATGCTGCGGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGATGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGTCCCAGATCCAAACTCAACCACACCTGAACCTGTCCTCCATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGACATTGTAAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCCCTGGGAGAGAGGACCAGACAAggccccagcccctgcctctaccCCTGGCTAAacctcttcccctgcccctgctaccagtgggggagagaggacatgaaGCCAGACCAGAGGAACCAGAAGGATGAGTCTGGGACATATTACAGgcATCTACTGGAGAAGTACCAGGATGTGATAGACATCTACAAGGCTGTCAACATCTTCAGAGCCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACTGGTgacaaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTACGGTGAAGCTGTAGAAGTGCAGCTGATTGAATACAGGGAGCTGAGTGTGTAAGGCTGTGTGTGCTGGCTTTCACACTGGGCAGGACTGTTCCTCTTGTCAGACATATTCCAATATTCCACTTTTATGTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACATAATGAATGTACACATCTAATAACACATTTAATTATTGTCAACAAAGGAGctacaataaaataaataacatttaggTTATAAAATCATAGAATGAAACTGTGTGAACTGTTCAACTGTATTTCCTTATGGGTATTGCAATGTC

Function

NR:

description
uncharacterized protein LOC110510817

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956789.1 False 2605 mRNA 0.49 13 9336881 9354472
XM_036956790.1 False 2517 mRNA 0.49 14 9336881 9354472
XM_036956791.1 False 2246 mRNA 0.49 13 9336882 9354472
XM_036956792.1 True 2504 mRNA 0.49 13 9336882 9354472

Neighbor

gene id symbol gene type direction distance location
zgc:194209 LOC106591857 coding upstream 95542 9217225 ~ 9241339 (+)
eps8a LOC106594571 coding upstream 245391 8908286 ~ 9091490 (+)
LOC118942859 NA coding upstream 252323 9082796 ~ 9084558 (+)
LOC118942863 NA coding upstream 309865 9024374 ~ 9027016 (+)
LOC118942857 dusp16 coding upstream 438510 8819609 ~ 8898371 (+)
LOC118943004 LOC106591072 coding downstream 33245 9387717 ~ 9391585 (+)
LOC118936575 LOC106592244 coding downstream 48022 9402494 ~ 9413171 (+)
LOC118942866 LOC106576670 coding downstream 177632 9532104 ~ 9722986 (+)
LOC118942867 NA coding downstream 415118 9769444 ~ 9771487 (+)
LOC118942868 mkrn1 coding downstream 470378 9824762 ~ 9864743 (+)
G1705645 NA non-coding upstream 3743 9299002 ~ 9333138 (+)
G1705650 NA non-coding upstream 15107 9315597 ~ 9321774 (+)
G1705654 NA non-coding upstream 33194 9300787 ~ 9303687 (+)
G1705671 gns non-coding upstream 60888 9274554 ~ 9275993 (+)
G1705670 NA non-coding upstream 65991 9270460 ~ 9270890 (+)
G1705728 NA non-coding downstream 114841 9469313 ~ 9471313 (+)
G1705863 NA non-coding downstream 167587 9522059 ~ 9529433 (+)
G1705879 NA non-coding downstream 182329 9536801 ~ 9537651 (+)
G1705880 NA non-coding downstream 184777 9539249 ~ 9539450 (+)
G1705279 NA other upstream 323718 9011926 ~ 9013163 (+)
G1705267 NA other upstream 360316 8975304 ~ 8976565 (+)
G1705229 NA other upstream 485774 8850398 ~ 8851107 (+)
LOC118942994 LOC106591951 other upstream 775669 8538928 ~ 8564807 (+)
G1705918 NA other downstream 300826 9655298 ~ 9655718 (+)
G1705920 NA other downstream 304859 9659331 ~ 9660140 (+)
G1706013 NA other downstream 393713 9748185 ~ 9753473 (+)
G1706090 NA other downstream 561241 9915713 ~ 9918019 (+)
G1706152 NA other downstream 779916 10134388 ~ 10135384 (+)

Expression


Co-expression Network