LOC118943004 (LOC106591072)


Basic Information

Item Value
gene id LOC118943004
gene name LOC106591072
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9387717 ~ 9391585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958472.1
ATTACGTTTTGTTCTCCCAGGCTATTGTACAAGCAGCCCAGTGTCTTGGCGGGTCGTACTGATGTGGTGGCAGTCACCCCGTGGTTGGCACCCATCGTCTGGGAAGGAACCTTTGACCCTGACCTCGTCGACACAATCTACAAGTCCATGAACATCACCATAGCAACCACAGTGTTTGCCGTTGGAAAATACGTCCGCTTTCTCAGAGATTTCCTGGAGACAGCAGAGAAGCACTTCCTGGTCGACTTCAACGTGCGCTACTACGTTTTCACAGATCGTCCTGACGATGTTCCGTCAGTGAACCTGTCTCAGGGGAGACATTTGAGTGTGATCCAGGTGCCAGGTTCAAACCGCTGGCAGGAGATATCAGCCCGGAGGATGGAGATCATCCAGACAGCCATCGAACGTCAGATCAGCAGGGAGGCCGACTACATCTTCTGTCTGGACGTGGACAGCAAGTTCCACGCTCGCTGGGGAGCCGAGTCTCTGGGCAGGCTGGTTGCTGTGATTCACCCATGGTTCTACCAGGTGACCCGTGACCACTTCACATACGAACGGCGTCCAGCCTCGACAGCTTACATCCCCATGGATGAGGGAGATTACTACTATGCCGGGGCCGTGTTCGGTGGGTTGTTGGAGGAAGTGTACACACTAACAAAGGTATGTCGGAACCAGCTTGAAGAGGATGCGAGGAATTCCATCGAGGCTGCCTGGCAGGAGGAGAGTCACCTCAACAGGTACCTGCTTTACAACAAGCCCAGCAAGCTGTTGTCTCCAGAGTACCAGTGGGATGACAAGAAGACCAAAACCAAAGAGGTCAAAGTAATTCGCTTCTCTTCTGTCGTTAAAAACTATGCTGAAATTCGTCCCAATGTATAGGACTAGGAATTGGATATTC
>TU1953322
AGGAATTCCATCGAGGCTGCCTGGCAGGAGGAGAGTCACCTCAACAGGTACCTGCTTTACAACAAGCCCAGCAAGCTGTTGTCTCCAGAGTACCAGTGGGATGACAAGAAGACCAAAACCAAAGAGGTCAAAGTAATTCGCTTCTCTTCTGTCGTTAAAAACTATGCTGAAATTCGTCCCAATGTATAGGACTAGGAATTGGATATTCGACCGAAAGAAGAAAAACTTAATAGATTATGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACTGAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACtgaggtttgggttaaggttaggttaagttcAGGTATAGCTTCACTGAGGTTTGGGTTAAGTTCAGGTTAAGTTCAGGGAAAGGTATAAAATGTCACATTGGATATACAGCTGTCCGGCCCCATTCATTTTGTGTTGGTGAAATATATACACTGACATAAAACTACTAttttaaatgtactgtatatcagtCACTGTTGTAGTTTGGGGATAATAACGTTCTTCATTTATAGGAAATTAAATATTTTGTATTACCTTATTCATCCTGTATTCTGTAGCCTATCTACT
>TU1953323
AGGAATTCCATCGAGGCTGCCTGGCAGGAGGAGAGTCACCTCAACAGGTACCTGCTTTACAACAAGCCCAGCAAGCTGTTGTCTCCAGAGTACCAGTGGGATGACAAGAAGACCAAAACCAAAGAGGTCAAAGTAATTCGCTTCTCTTCTGTCGTTAAAAACTATGCTGAAATTCGTCCCAATGTATAGGACTAGGAATTGGATATTCGACCGAAAGAAGAAAAACTTAATAGATTATGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCactgaggttagggttaaggttagGTTAAGTTCAGGTATAGCTTCACtgaggtttgggttaaggttaggttaagttcAGGTATAGCTTCACTGAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACTGAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGTTAAGTTCAGGGAAAGGTATAAAATGTCACATTGGATATACAGCTGTCCGGCCCCATTCATTTTGTGTTGGTGAAATATATACACTGACATAAAACTACTAttttaaatgtactgtatatcagtCACTGTTGTAGTTTGGGGATAATAACGTTCTTCATTTATAGGAAATTAAATATTTTGTATTACCTTATTCATCCTGTATTCTGTAGCCTATCTACT

Function

NR:

description
PREDICTED: globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like, partial

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958472.1 False 898 mRNA 0.52 3 9387717 9391042
TU1953322 False 603 lncRNA 0.38 3 9390835 9391585
TU1953323 True 658 lncRNA 0.38 3 9390835 9391585

Neighbor

gene id symbol gene type direction distance location
LOC110507941 LOC106592244 coding upstream 33245 9336881 ~ 9354472 (+)
zgc:194209 LOC106591857 coding upstream 146378 9217225 ~ 9241339 (+)
eps8a LOC106594571 coding upstream 296227 8908286 ~ 9091490 (+)
LOC118942859 NA coding upstream 303159 9082796 ~ 9084558 (+)
LOC118942863 NA coding upstream 360701 9024374 ~ 9027016 (+)
LOC118936575 LOC106592244 coding downstream 11452 9402494 ~ 9413171 (+)
LOC118942866 LOC106576670 coding downstream 141062 9532104 ~ 9722986 (+)
LOC118942867 NA coding downstream 378548 9769444 ~ 9771487 (+)
LOC118942868 mkrn1 coding downstream 433808 9824762 ~ 9864743 (+)
LOC110516560 LOC106576660 coding downstream 477360 9868402 ~ 9870589 (+)
G1705645 NA non-coding upstream 54579 9299002 ~ 9333138 (+)
G1705650 NA non-coding upstream 65943 9315597 ~ 9321774 (+)
G1705654 NA non-coding upstream 84030 9300787 ~ 9303687 (+)
G1705671 gns non-coding upstream 111724 9274554 ~ 9275993 (+)
G1705670 NA non-coding upstream 116827 9270460 ~ 9270890 (+)
G1705728 NA non-coding downstream 78271 9469313 ~ 9471313 (+)
G1705863 NA non-coding downstream 131017 9522059 ~ 9529433 (+)
G1705879 NA non-coding downstream 145759 9536801 ~ 9537651 (+)
G1705880 NA non-coding downstream 148207 9539249 ~ 9539450 (+)
G1705884 NA non-coding downstream 157177 9548219 ~ 9548667 (+)
G1705279 NA other upstream 374554 9011926 ~ 9013163 (+)
G1705267 NA other upstream 411152 8975304 ~ 8976565 (+)
G1705229 NA other upstream 536610 8850398 ~ 8851107 (+)
LOC118942994 LOC106591951 other upstream 826505 8538928 ~ 8564807 (+)
G1705918 NA other downstream 264256 9655298 ~ 9655718 (+)
G1705920 NA other downstream 268289 9659331 ~ 9660140 (+)
G1706013 NA other downstream 357143 9748185 ~ 9753473 (+)
G1706090 NA other downstream 524671 9915713 ~ 9918019 (+)
G1706152 NA other downstream 743346 10134388 ~ 10135384 (+)

Expression


Co-expression Network