LOC118936575 (LOC106592244)


Basic Information

Item Value
gene id LOC118936575
gene name LOC106592244
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9402494 ~ 9413171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956795.1
TCTGCAGTACCTTATTAtttcctcatctcttctccttacATCACCTCatttcactcctcctcctcaacagTGACTAATCCAAGCCAGAAGCAGTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTACACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCATGTACAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTGTAGTGACGGCTATGCACCTCTCAACAGGGCTGGATGCTGCCCCGGGGGTAGTGAACActacagaggaggaggtggaaggggtGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCCACTGCAGAGtTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCGGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTCAGGAGACACACAGACCAGCCGGTCTGGATAGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACACTGgagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCAGCATTACCAAGTCAGAAGAAATCACACGAGAGAGAGCTGGTTGAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCGACACAACCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGACAGAGTCATCCCCATGCTGCGgGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGATGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGGCCCAGAACCAAACTCAACCACACCTGAACCTGTCCTCCATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTTCATGACATTGTAAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCGCTGGGAGAGAGGACCAGACCAggccccagcccctgcctctaccCCTGGCTAAacctcttcccctgcccctgctaccagtgggggagagaggacatgaaGCCAGACCAGAGGAACCAGAAGGATGAGTCTGGGACATATTACAGgcaTCTACTGGAGAAGTACCAGGATGTGATAGACGTCTATAAGGCTGTCAACATCTTCAGAGTCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACtggtgaagaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTAGGGTGAAGCTGTAGCAGTGCAGCTGTAGAATACAGGGAGCTGAGTGTGtaaggctgtgtgtgttggcttTCACACTGGGCAGGACTTCCACTTGTCAGACATATTccaatattacacttttatgTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACACAATGAATGTACACATTTAATTATTGTCAACAAAgctacaataaaataaaaaagatttAGGTAATAAAATCATAGAATGAAA
>XM_036956796.1
TCTGCAGTACCTTATTAtttcctcatctcttctccttacATCACCTCatttcactcctcctcctcaacagTGACTAATCCAAGCCAGAAGCAGTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTACACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTGTAGTGACGGCTATGCACCTCTCAACAGGGCTGGATGCTGCCCCGGGGGTAGTGAACActacagaggaggaggtggaaggggtGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCCACTGCAGAGtTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCGGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTCAGGAGACACACAGACCAGCCGGTCTGGATAGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACACTGgagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCAGCATTACCAAGTCAGAAGAAATCACACGAGAGAGAGCTGGTTGAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCGACACAACCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGACAGAGTCATCCCCATGCTGCGgGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGATGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGGCCCAGAACCAAACTCAACCACACCTGAACCTGTCCTCCATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTTCATGACATTGTAAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCGCTGGGAGAGAGGACCAGACCAggccccagcccctgcctctaccCCTGGCTAAacctcttcccctgcccctgctaccagtgggggagagaggacatgaaGCCAGACCAGAGGAACCAGAAGGATGAGTCTGGGACATATTACAGgcaTCTACTGGAGAAGTACCAGGATGTGATAGACGTCTATAAGGCTGTCAACATCTTCAGAGTCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACtggtgaagaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTAGGGTGAAGCTGTAGCAGTGCAGCTGTAGAATACAGGGAGCTGAGTGTGtaaggctgtgtgtgttggcttTCACACTGGGCAGGACTTCCACTTGTCAGACATATTccaatattacacttttatgTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACACAATGAATGTACACATTTAATTATTGTCAACAAAgctacaataaaataaaaaagatttAGGTAATAAAATCATAGAATGAAA
>XM_036956798.1
ACCTTATTAtttcctcatctcttctccttacATCACCTCatttcactcctcctcctcaacagTGACTAATCCAAGCCAGAAGCAGTAGCCAGCTCAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTGTAGTGACGGCTATGCACCTCTCAACAGGGCTGGATGCTGCCCCGGGGGTAGTGAACActacagaggaggaggtggaaggggtGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCCACTGCAGAGtTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCGGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTCAGGAGACACACAGACCAGCCGGTCTGGATAGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACACTGgagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCAGCATTACCAAGTCAGAAGAAATCACACGAGAGAGAGCTGGTTGAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCGACACAACCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGACAGAGTCATCCCCATGCTGCGgGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGATGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGGCCCAGAACCAAACTCAACCACACCTGAACCTGTCCTCCATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTTCATGACATTGTAAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCGCTGGGAGAGAGGACCAGACCAggccccagcccctgcctctaccCCTGGCTAAacctcttcccctgcccctgctaccagtgggggagagaggacatgaaGCCAGACCAGAGGAACCAGAAGGATGAGTCTGGGACATATTACAGgcaTCTACTGGAGAAGTACCAGGATGTGATAGACGTCTATAAGGCTGTCAACATCTTCAGAGTCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACtggtgaagaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTAGGGTGAAGCTGTAGCAGTGCAGCTGTAGAATACAGGGAGCTGAGTGTGtaaggctgtgtgtgttggcttTCACACTGGGCAGGACTTCCACTTGTCAGACATATTccaatattacacttttatgTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACACAATGAATGTACACATTTAATTATTGTCAACAAAgctacaataaaataaaaaagatttAGGTAATAAAATCATAGAATGAAA

Function

NR:

description
uncharacterized protein LOC110510817

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956795.1 False 1804 mRNA 0.51 13 9402494 9413171
XM_036956796.1 False 1773 mRNA 0.52 13 9402494 9413171
XM_036956798.1 True 1680 mRNA 0.52 13 9402502 9413171

Neighbor

gene id symbol gene type direction distance location
LOC118943004 LOC106591072 coding upstream 11452 9387717 ~ 9391585 (+)
LOC110507941 LOC106592244 coding upstream 48022 9336881 ~ 9354472 (+)
zgc:194209 LOC106591857 coding upstream 161155 9217225 ~ 9241339 (+)
eps8a LOC106594571 coding upstream 311004 8908286 ~ 9091490 (+)
LOC118942866 LOC106576670 coding downstream 118933 9532104 ~ 9722986 (+)
LOC118942867 NA coding downstream 356419 9769444 ~ 9771487 (+)
LOC118942868 mkrn1 coding downstream 411679 9824762 ~ 9864743 (+)
LOC110516560 LOC106576660 coding downstream 455231 9868402 ~ 9870589 (+)
LOC118942870 NA coding downstream 567624 9980795 ~ 9981137 (+)
G1705645 NA non-coding upstream 69356 9299002 ~ 9333138 (+)
G1705650 NA non-coding upstream 80720 9315597 ~ 9321774 (+)
G1705654 NA non-coding upstream 98807 9300787 ~ 9303687 (+)
G1705671 gns non-coding upstream 126501 9274554 ~ 9275993 (+)
G1705728 NA non-coding downstream 56142 9469313 ~ 9471313 (+)
G1705863 NA non-coding downstream 108888 9522059 ~ 9529433 (+)
G1705879 NA non-coding downstream 123630 9536801 ~ 9537651 (+)
G1705880 NA non-coding downstream 126078 9539249 ~ 9539450 (+)
G1705884 NA non-coding downstream 135048 9548219 ~ 9548667 (+)
G1705279 NA other upstream 389331 9011926 ~ 9013163 (+)
G1705267 NA other upstream 425929 8975304 ~ 8976565 (+)
G1705229 NA other upstream 551387 8850398 ~ 8851107 (+)
LOC118942994 LOC106591951 other upstream 841282 8538928 ~ 8564807 (+)
G1705918 NA other downstream 242127 9655298 ~ 9655718 (+)
G1705920 NA other downstream 246160 9659331 ~ 9660140 (+)
G1706013 NA other downstream 335014 9748185 ~ 9753473 (+)
G1706090 NA other downstream 502542 9915713 ~ 9918019 (+)
G1706152 NA other downstream 721217 10134388 ~ 10135384 (+)

Expression


Co-expression Network